mRNA_D-herbacea_F_contig111.937.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig111.937.1
Unique NamemRNA_D-herbacea_F_contig111.937.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig111.937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig111contigD-herbacea_F_contig111:62404..62736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.803264-CDS-D-herbacea_F_contig111:62403..627361622927519.803264-CDS-D-herbacea_F_contig111:62403..62736Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 62404..62736 +
1690790213.5971563-CDS-D-herbacea_F_contig111:62403..627361690790213.5971563-CDS-D-herbacea_F_contig111:62403..62736Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig111 62404..62736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig111.937.1prot_D-herbacea_F_contig111.937.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig111 62404..62736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig111.937.1

>prot_D-herbacea_F_contig111.937.1 ID=prot_D-herbacea_F_contig111.937.1|Name=mRNA_D-herbacea_F_contig111.937.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=111bp
IFSPRTVPSPTGRSPYNTVLQAKPLHGCIRMTQPNTRCVGHPTITTLRGS
AEKMILRWLHPLIRDKKNRHRVSFDHKMVKTTLARAGCHQYPLKSLKHPI
VTVKNAIAFCQ
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mRNA from alignment at D-herbacea_F_contig111:62404..62736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig111.937.1 ID=mRNA_D-herbacea_F_contig111.937.1|Name=mRNA_D-herbacea_F_contig111.937.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=333bp|location=Sequence derived from alignment at D-herbacea_F_contig111:62404..62736+ (Desmarestia herbacea DmunF female)
ATTTTTTCACCACGGACCGTACCGTCACCGACCGGGCGTTCTCCGTACAA
TACCGTTCTTCAAGCCAAGCCTCTCCATGGATGCATCCGTATGACACAAC
CGAACACCCGTTGCGTCGGACACCCAACAATAACGACGCTGCGGGGAAGT
GCTGAAAAAATGATTCTGCGGTGGTTACACCCATTAATTCGCGATAAAAA
AAATCGCCACCGCGTATCCTTTGATCACAAGATGGTCAAAACAACGCTAG
CTAGGGCCGGGTGCCACCAATACCCTCTGAAGTCGCTGAAGCACCCCATC
GTCACCGTCAAGAATGCCATTGCTTTCTGCCAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig111:62404..62736+

>mRNA_D-herbacea_F_contig111.937.1 ID=mRNA_D-herbacea_F_contig111.937.1|Name=mRNA_D-herbacea_F_contig111.937.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=666bp|location=Sequence derived from alignment at D-herbacea_F_contig111:62404..62736+ (Desmarestia herbacea DmunF female)
ATTTTTTCACCACGGACCGTACCGTCACCGACCGGGCGTTCTCCGTACAA
TACCGTTCTTCAAGCCAAGCCTCTCCATGGATGCATCCGTATGACACAAC
CGAACACCCGTTGCGTCGGACACCCAACAATAACGACGCTGCGGGGAAGT
GCTGAAAAAATGATTCTGCGGTGGTTACACCCATTAATTCGCGATAAAAA
AAATCGCCACCGCGTATCCTTTGATCACAAGATGGTCAAAACAACGCTAG
CTAGGGCCGGGTGCCACCAATACCCTCTGAAGTCGCTGAAGCACCCCATC
GTCACCGTCAAGAATGCCATTGCTTTCTGCCAGATTTTTTCACCACGGAC
CGTACCGTCACCGACCGGGCGTTCTCCGTACAATACCGTTCTTCAAGCCA
AGCCTCTCCATGGATGCATCCGTATGACACAACCGAACACCCGTTGCGTC
GGACACCCAACAATAACGACGCTGCGGGGAAGTGCTGAAAAAATGATTCT
GCGGTGGTTACACCCATTAATTCGCGATAAAAAAAATCGCCACCGCGTAT
CCTTTGATCACAAGATGGTCAAAACAACGCTAGCTAGGGCCGGGTGCCAC
CAATACCCTCTGAAGTCGCTGAAGCACCCCATCGTCACCGTCAAGAATGC
CATTGCTTTCTGCCAG
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