mRNA_D-herbacea_F_contig1105.932.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1105.932.1
Unique NamemRNA_D-herbacea_F_contig1105.932.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 489 bits (1259), Expect = 4.810e-168
Identity = 240/249 (96.39%), Postives = 243/249 (97.59%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLIP 747
            MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDM STMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDS+K FTACSNCTHCSSAS K DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGV L+VD+ ASETMFDNRLIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKDDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 477 bits (1228), Expect = 9.330e-166
Identity = 235/251 (93.63%), Postives = 240/251 (95.62%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ--GGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLIP 747
            MEELENNPMNPGENPDDYFNQKH L  QLDKMGEPISDRRFKDICVQGFSDEY+DVKLM+FRDPTFNVLDMQSTMRNI+LDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQ  GGK PEDTKDSSKAFT CS+CTHCSS  NKHDSNNEV VVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGAS TMFDNRL+P
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSSTCNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 459 bits (1181), Expect = 9.730e-161
Identity = 228/250 (91.20%), Postives = 235/250 (94.00%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNI-FLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLIP 747
            MEELENNPMNPGENPDDYFNQKHL+R QLDKMGEPISDRR KDI VQGFSDEY+DVKLMVFRDPTFN L MQST+RN  + +EQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWC KHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACS+CTHCSSA NK+DSNNEVAV DFTRDEDAFDSGFMF TCSRIS RNFAASSTG  LLVDTGASETMFDNRLIP
Sbjct:   96 MEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKNDSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIP 345
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 477 bits (1227), Expect = 1.410e-159
Identity = 235/247 (95.14%), Postives = 238/247 (96.36%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRL 741
            MEELENNPMNPGE+PDDY NQKHLLRTQLD MGEPISDRRFKDICVQG SDE+KDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKG IAGRGFAMATTASDIICHSCYEPGHIRRNCP IKNRAKKKTKPAGAT WCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTH  SASNKHDSNNEVAVVDFTRDEDAFDSGF+F TCSRISGRNFAASSTGVGLLVDTGASETMFDNRL
Sbjct:   74 MEELENNPMNPGEDPDDYCNQKHLLRTQLDTMGEPISDRRFKDICVQGISDEHKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGCIAGRGFAMATTASDIICHSCYEPGHIRRNCPMIKNRAKKKTKPAGATTWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHXXSASNKHDSNNEVAVVDFTRDEDAFDSGFIFGTCSRISGRNFAASSTGVGLLVDTGASETMFDNRL 320
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 4.940e-154
Identity = 229/248 (92.34%), Postives = 234/248 (94.35%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLI 744
            MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTF+VLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIIC   YEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACS+CT       K+DSNNEVAVVDFTRDEDAFDSGFMFATCSRIS RN AA+STGVGLLVDTG SET+ DNRLI
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFSVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIIC---YEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTXXXXXXXKNDSNNEVAVVDFTRDEDAFDSGFMFATCSRISKRNLAATSTGVGLLVDTGVSETILDNRLI 245
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5K9Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y0_9PHAE)

HSP 1 Score: 461 bits (1185), Expect = 1.650e-152
Identity = 234/268 (87.31%), Postives = 235/268 (87.69%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKH-----------------------LLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDN 735
            MEELENNPMNPGENPDD                             LLRTQLDKMGEPISDRRFKDICVQGFSDEY DVKLMVFR PTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMF TCSRISGRN AASSTG+GLLVDTGASETMFDN
Sbjct:  118 MEELENNPMNPGENPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRTQLDKMGEPISDRRFKDICVQGFSDEYNDVKLMVFRYPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFGTCSRISGRNVAASSTGLGLLVDTGASETMFDN 385
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 431 bits (1107), Expect = 1.040e-149
Identity = 209/217 (96.31%), Postives = 211/217 (97.24%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSR 651
            MEELENNPMNPGENPD+YFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCT      NKHDSN+EVAVVDFTRDEDAFDSGFMFATCSR
Sbjct:  138 MEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTXXXXXXNKHDSNDEVAVVDFTRDEDAFDSGFMFATCSR 354
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5JQ58_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ58_9PHAE)

HSP 1 Score: 424 bits (1089), Expect = 1.250e-148
Identity = 209/240 (87.08%), Postives = 223/240 (92.92%), Query Frame = 1 
Query:   25 MNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLI 744
            M P ENPDD+FN+ H LR+ L K+GE IS RRFKDICVQGFS++YKD+K+MVFRDP+F+   MQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS+IICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKW SKHNT SHSDEECYQQG KRPEDTKDSSKAFTAC NCTHCSSASNK+DSNNEVAVV+FT DE+AFDSGFMFATC RISGRNFAASSTGVGLLVDTGASETMFDNRLI
Sbjct:    1 MEPVENPDDFFNEIHRLRSHLAKIGETISGRRFKDICVQGFSEDYKDIKMMVFRDPSFDEQQMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASNIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWYSKHNTLSHSDEECYQQGRKRPEDTKDSSKAFTACFNCTHCSSASNKNDSNNEVAVVNFTPDENAFDSGFMFATCFRISGRNFAASSTGVGLLVDTGASETMFDNRLI 240
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 1.690e-148
Identity = 222/233 (95.28%), Postives = 224/233 (96.14%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLL 699
            MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEP SDRR KDI VQGFSDEYKDVK+M FRDPTFNVLDMQSTMRNIFLDEQS K WKGRIAGRGFAMATTASDIICH CYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTR+EDAFD GFMFATC RISGRNFAASSTGVGLL
Sbjct:  149 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPNSDRRVKDIFVQGFSDEYKDVKVMAFRDPTFNVLDMQSTMRNIFLDEQSCKRWKGRIAGRGFAMATTASDIICHRCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTREEDAFDIGFMFATCFRISGRNFAASSTGVGLL 381
[Close]
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 430 bits (1106), Expect = 1.120e-145
Identity = 220/249 (88.35%), Postives = 221/249 (88.76%), Query Frame = 1 
Query:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLIP 747
            MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVF DPTFNVLDM STMRNIFLDEQSRKGWKGRIAGRGFA+ATTA                        AKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMF TCSRISGRNFAASSTGVGLLVDTGASE MFDNRLIP
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFGDPTFNVLDMPSTMRNIFLDEQSRKGWKGRIAGRGFAVATTA------------------------AKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFTRDEDAFDSGFMFGTCSRISGRNFAASSTGVGLLVDTGASEPMFDNRLIP 225
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1105.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L580_9PHAE4.810e-16896.39CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZ53_9PHAE9.330e-16693.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXR7_9PHAE9.730e-16191.20CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0G3_9PHAE1.410e-15995.14CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKH7_9PHAE4.940e-15492.34gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5K9Y0_9PHAE1.650e-15287.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JF66_9PHAE1.040e-14996.31CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JQ58_9PHAE1.250e-14887.08CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8P7_9PHAE1.690e-14895.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE1.120e-14588.35Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1105contigD-herbacea_F_contig1105:38128..38874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size747
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.5255923-CDS-D-herbacea_F_contig1105:38127..388741622927519.5255923-CDS-D-herbacea_F_contig1105:38127..38874Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1105 38128..38874 +
1690790213.4667542-CDS-D-herbacea_F_contig1105:38127..388741690790213.4667542-CDS-D-herbacea_F_contig1105:38127..38874Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1105 38128..38874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1105.932.1prot_D-herbacea_F_contig1105.932.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1105 38128..38874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1105.932.1

>prot_D-herbacea_F_contig1105.932.1 ID=prot_D-herbacea_F_contig1105.932.1|Name=mRNA_D-herbacea_F_contig1105.932.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=249bp
MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFS
DEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMA
TTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHS
DEECYQQGGKRPEDTKDSSKAFTACSNCTHCSSASNKHDSNNEVAVVDFT
RDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASETMFDNRLIP
back to top

mRNA from alignment at D-herbacea_F_contig1105:38128..38874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1105.932.1 ID=mRNA_D-herbacea_F_contig1105.932.1|Name=mRNA_D-herbacea_F_contig1105.932.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=747bp|location=Sequence derived from alignment at D-herbacea_F_contig1105:38128..38874+ (Desmarestia herbacea DmunF female)
ATGGAGGAGCTGGAGAACAACCCCATGAACCCTGGTGAAAATCCCGACGA
CTACTTCAACCAGAAGCACCTACTTCGCACCCAGCTGGATAAGATGGGAG
AACCCATCTCCGACCGCCGCTTCAAGGACATCTGCGTACAGGGCTTCTCC
GACGAATACAAGGACGTCAAACTGATGGTGTTCAGGGACCCAACCTTCAA
CGTCCTGGACATGCAATCCACCATGCGCAACATCTTCTTGGACGAACAAT
CGCGCAAGGGATGGAAGGGACGCATAGCTGGTCGAGGATTTGCCATGGCA
ACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGGGCACAT
CAGGAGGAACTGCCCCAAGATCAAGAATAGGGCGAAGAAGAAAACGAAGC
CCGCCGGAGCTACCAAGTGGTGCTCCAAGCACAACACCACGTCTCACTCG
GACGAGGAATGCTACCAGCAAGGAGGAAAGCGCCCGGAAGACACCAAGGA
CTCAAGTAAAGCATTCACCGCGTGCTCCAACTGCACTCACTGCTCGTCGG
CGTCCAACAAGCACGACTCAAACAATGAAGTGGCAGTTGTCGACTTCACC
CGGGACGAGGACGCCTTCGACAGCGGCTTCATGTTCGCCACGTGTTCCCG
CATCTCAGGACGCAACTTCGCCGCGAGCTCCACCGGGGTAGGCCTGCTGG
TAGACACGGGAGCATCGGAGACCATGTTTGATAATCGCCTCATCCCC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig1105:38128..38874+

>mRNA_D-herbacea_F_contig1105.932.1 ID=mRNA_D-herbacea_F_contig1105.932.1|Name=mRNA_D-herbacea_F_contig1105.932.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1494bp|location=Sequence derived from alignment at D-herbacea_F_contig1105:38128..38874+ (Desmarestia herbacea DmunF female)
ATGGAGGAGCTGGAGAACAACCCCATGAACCCTGGTGAAAATCCCGACGA
CTACTTCAACCAGAAGCACCTACTTCGCACCCAGCTGGATAAGATGGGAG
AACCCATCTCCGACCGCCGCTTCAAGGACATCTGCGTACAGGGCTTCTCC
GACGAATACAAGGACGTCAAACTGATGGTGTTCAGGGACCCAACCTTCAA
CGTCCTGGACATGCAATCCACCATGCGCAACATCTTCTTGGACGAACAAT
CGCGCAAGGGATGGAAGGGACGCATAGCTGGTCGAGGATTTGCCATGGCA
ACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGGGCACAT
CAGGAGGAACTGCCCCAAGATCAAGAATAGGGCGAAGAAGAAAACGAAGC
CCGCCGGAGCTACCAAGTGGTGCTCCAAGCACAACACCACGTCTCACTCG
GACGAGGAATGCTACCAGCAAGGAGGAAAGCGCCCGGAAGACACCAAGGA
CTCAAGTAAAGCATTCACCGCGTGCTCCAACTGCACTCACTGCTCGTCGG
CGTCCAACAAGCACGACTCAAACAATGAAGTGGCAGTTGTCGACTTCACC
CGGGACGAGGACGCCTTCGACAGCGGCTTCATGTTCGCCACGTGTTCCCG
CATCTCAGGACGCAACTTCGCCGCGAGCTCCACCGGGGTAGGCCTGCTGG
TAGACACGGGAGCATCGGAGACCATGTTTGATAATCGCCTCATCCCCATG
GAGGAGCTGGAGAACAACCCCATGAACCCTGGTGAAAATCCCGACGACTA
CTTCAACCAGAAGCACCTACTTCGCACCCAGCTGGATAAGATGGGAGAAC
CCATCTCCGACCGCCGCTTCAAGGACATCTGCGTACAGGGCTTCTCCGAC
GAATACAAGGACGTCAAACTGATGGTGTTCAGGGACCCAACCTTCAACGT
CCTGGACATGCAATCCACCATGCGCAACATCTTCTTGGACGAACAATCGC
GCAAGGGATGGAAGGGACGCATAGCTGGTCGAGGATTTGCCATGGCAACG
ACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGGGCACATCAG
GAGGAACTGCCCCAAGATCAAGAATAGGGCGAAGAAGAAAACGAAGCCCG
CCGGAGCTACCAAGTGGTGCTCCAAGCACAACACCACGTCTCACTCGGAC
GAGGAATGCTACCAGCAAGGAGGAAAGCGCCCGGAAGACACCAAGGACTC
AAGTAAAGCATTCACCGCGTGCTCCAACTGCACTCACTGCTCGTCGGCGT
CCAACAAGCACGACTCAAACAATGAAGTGGCAGTTGTCGACTTCACCCGG
GACGAGGACGCCTTCGACAGCGGCTTCATGTTCGCCACGTGTTCCCGCAT
CTCAGGACGCAACTTCGCCGCGAGCTCCACCGGGGTAGGCCTGCTGGTAG
ACACGGGAGCATCGGAGACCATGTTTGATAATCGCCTCATCCCC
back to top