mRNA_D-herbacea_F_contig1103.931.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1103.931.1
Unique NamemRNA_D-herbacea_F_contig1103.931.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: G5A2I4_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2I4_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 3.550e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:   13 AARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 95          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.090e-9
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:  481 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLN 563          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.140e-8
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:  445 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 527          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.210e-8
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:  310 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 392          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-8
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:  445 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 527          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A225VYH6_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYH6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.110e-7
Identity = 32/94 (34.04%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKNPQAICSNP 297
            AALE G     E++L  ++   + D +R +L  DPPA+V+P +++LK  A    +K++PR Y PA   ++ E  ++L   G  Y+NP +  ++P
Sbjct:  361 AALEQGFPRRLESKLRAIVF--KHDVWRLTLGDDPPAKVDPLEIRLKEGA--KSIKSKPRQYPPAVRTFMREFNSKLVELGWVYENPTSRWASP 450          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.250e-7
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   55 RLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:   21 RLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLN 90          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.870e-7
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            AA   GLS+    RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YS    A+LD   A+L   G+   N
Sbjct:  402 AARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSSNDKAFLDRHTAKLQEFGLVSLN 484          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3GI80_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GI80_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.380e-7
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   55 RLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
            RL ++LL  Q D FR     DPP +V P QV++KV+A  +K  A+PR YSP   A+LD   A+L   G+ + N
Sbjct:    5 RLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 74          
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: W2WN79_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WN79_PHYPR)

HSP 1 Score: 52.8 bits (125), Expect = 9.950e-7
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    4 AAVDAALETGLSSD-AETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKNPQAICSNPA 300
            A V+ A++ G+  D   TRL+D++   ++ G+R  L  DPPAR +PF+++LK +A   + K R    SP K+A+L+    +L   G  Y+N +     PA
Sbjct:    4 ALVNDAIDRGVVDDHITTRLYDVV--RRYCGWRLKLGNDPPARAQPFKLRLKPNAKPYRCKVRQN--SPDKSAFLETFNKRLLELGWVYENRERQWRRPA 99          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
G5A2I4_PHYSP3.550e-1043.02Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A3YWA9_9STRA9.090e-943.02Reverse transcriptase domain-containing protein n=... [more]
A0A6A3VFD8_9STRA3.140e-843.02Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0MLJ8_9STRA3.210e-843.02Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3Q7S3_9STRA3.260e-843.02Uncharacterized protein n=6 Tax=Phytophthora fraga... [more]
A0A225VYH6_9STRA2.110e-734.04RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A6G0NWQ3_9STRA2.250e-743.84Reverse transcriptase domain-containing protein n=... [more]
A0A2P4WWJ1_9STRA3.870e-741.86Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3GI80_9STRA8.380e-743.84Reverse transcriptase domain-containing protein n=... [more]
W2WN79_PHYPR9.950e-735.00Uncharacterized protein n=1 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1103contigD-herbacea_F_contig1103:2923..3225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog67593.Physo136661
Hectar predicted targeting categoryother localisation
EggNOG OGs2CTDY@1,2RG0D@2759,3QHIH@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.4875276-CDS-D-herbacea_F_contig1103:2922..32251622927519.4875276-CDS-D-herbacea_F_contig1103:2922..3225Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1103 2923..3225 -
1690790213.454904-CDS-D-herbacea_F_contig1103:2922..32251690790213.454904-CDS-D-herbacea_F_contig1103:2922..3225Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1103 2923..3225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1103.931.1prot_D-herbacea_F_contig1103.931.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1103 2923..3225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1103.931.1

>prot_D-herbacea_F_contig1103.931.1 ID=prot_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=101bp
MAAVDAALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVK
LKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKNPQAICSNPA
*
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mRNA from alignment at D-herbacea_F_contig1103:2923..3225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1103.931.1 ID=mRNA_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=303bp|location=Sequence derived from alignment at D-herbacea_F_contig1103:2923..3225- (Desmarestia herbacea DmunF female)
ATGGCGGCGGTGGATGCTGCGTTGGAGACTGGCTTGTCGTCTGACGCCGA GACTCGTCTACATGATCTATTGCTTGGATCGCAATTTGATGGTTTTCGCC GATCATTGTCGGGGGATCCACCGGCGAGGGTGGAACCTTTCCAAGTGAAG CTGAAAGTGGATGCCGATTTGTCCAAGGTGAAGGCAAGGCCGAGGGTGTA TTCACCGGCGAAGACTGCATGGTTGGACGAACAGTTTGCACAACTTGCCC GCACCGGAATGGAGTACAAGAACCCGCAAGCGATATGTTCAAATCCTGCC TAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1103:2923..3225-

>mRNA_D-herbacea_F_contig1103.931.1 ID=mRNA_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_F_contig1103:2923..3225- (Desmarestia herbacea DmunF female)
ATGGCGGCGGTGGATGCTGCGTTGGAGACTGGCTTGTCGTCTGACGCCGA
GACTCGTCTACATGATCTATTGCTTGGATCGCAATTTGATGGTTTTCGCC
GATCATTGTCGGGGGATCCACCGGCGAGGGTGGAACCTTTCCAAGTGAAG
CTGAAAGTGGATGCCGATTTGTCCAAGGTGAAGGCAAGGCCGAGGGTGTA
TTCACCGGCGAAGACTGCATGGTTGGACGAACAGTTTGCACAACTTGCCC
GCACCGGAATGGAGTACAAGAACCCGCAAGCGATATGTTCAAATCCTGCC
TAGATGGCGGCGGTGGATGCTGCGTTGGAGACTGGCTTGTCGTCTGACGC
CGAGACTCGTCTACATGATCTATTGCTTGGATCGCAATTTGATGGTTTTC
GCCGATCATTGTCGGGGGATCCACCGGCGAGGGTGGAACCTTTCCAAGTG
AAGCTGAAAGTGGATGCCGATTTGTCCAAGGTGAAGGCAAGGCCGAGGGT
GTATTCACCGGCGAAGACTGCATGGTTGGACGAACAGTTTGCACAACTTG
CCCGCACCGGAATGGAGTACAAGAACCCGCAAGCGATATGTTCAAATCCT
GCCTAG
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