mRNA_D-herbacea_F_contig1103.931.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: G5A2I4_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2I4_PHYSP) HSP 1 Score: 61.6 bits (148), Expect = 3.550e-10 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 13 AARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 95
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 9.090e-9 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 481 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLN 563
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.140e-8 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 445 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 527
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.210e-8 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 310 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 392
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 3.260e-8 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 445 AARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 527
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A225VYH6_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYH6_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.110e-7 Identity = 32/94 (34.04%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKNPQAICSNP 297
AALE G E++L ++ + D +R +L DPPA+V+P +++LK A +K++PR Y PA ++ E ++L G Y+NP + ++P
Sbjct: 361 AALEQGFPRRLESKLRAIVF--KHDVWRLTLGDDPPAKVDPLEIRLKEGA--KSIKSKPRQYPPAVRTFMREFNSKLVELGWVYENPTSRWASP 450
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.250e-7 Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 55 RLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 21 RLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAYLDRHTAKLLEFGLVFLN 90
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.870e-7 Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 16 AALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
AA GLS+ RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YS A+LD A+L G+ N
Sbjct: 402 AARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTK--AQPRRYSSNDKAFLDRHTAKLQEFGLVSLN 484
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: A0A6A3GI80_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GI80_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 8.380e-7 Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 55 RLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKN 273
RL ++LL Q D FR DPP +V P QV++KV+A +K A+PR YSP A+LD A+L G+ + N
Sbjct: 5 RLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTK--AQPRRYSPDDRAFLDRHTAKLLEFGLVFLN 74
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Match: W2WN79_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WN79_PHYPR) HSP 1 Score: 52.8 bits (125), Expect = 9.950e-7 Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 4 AAVDAALETGLSSD-AETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKLKVDADLSKVKARPRVYSPAKTAWLDEQFAQLARTGMEYKNPQAICSNPA 300
A V+ A++ G+ D TRL+D++ ++ G+R L DPPAR +PF+++LK +A + K R SP K+A+L+ +L G Y+N + PA
Sbjct: 4 ALVNDAIDRGVVDDHITTRLYDVV--RRYCGWRLKLGNDPPARAQPFKLRLKPNAKPYRCKVRQN--SPDKSAFLETFNKRLLELGWVYENRERQWRRPA 99 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1103.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1103.931.1 >prot_D-herbacea_F_contig1103.931.1 ID=prot_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=101bp MAAVDAALETGLSSDAETRLHDLLLGSQFDGFRRSLSGDPPARVEPFQVKback to top mRNA from alignment at D-herbacea_F_contig1103:2923..3225- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1103.931.1 ID=mRNA_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=303bp|location=Sequence derived from alignment at D-herbacea_F_contig1103:2923..3225- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1103:2923..3225- >mRNA_D-herbacea_F_contig1103.931.1 ID=mRNA_D-herbacea_F_contig1103.931.1|Name=mRNA_D-herbacea_F_contig1103.931.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_F_contig1103:2923..3225- (Desmarestia herbacea DmunF female)back to top |