mRNA_D-herbacea_F_contig1100.930.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1100.930.1
Unique NamemRNA_D-herbacea_F_contig1100.930.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig1100.930.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.490e-23
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 PEPYSLGHLRVLFQRLIDAQEGRGEGETTVVETLRAISEVVVYGENQDARFAAKAAKEAE 180
            PEPYSLGHLRVLFQRLIDAQEG+ EGETTVVETLRAISEVVVYGENQDA+ +A+AA +A+
Sbjct:   99 PEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKLSARAAAKAQ 158
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BLAST of mRNA_D-herbacea_F_contig1100.930.1 vs. uniprot
Match: D7FXA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.830e-15
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 PEPYSLGHLRVLFQRLIDAQEGRGEGETTVVETLRAIS 114
            PEPYSLGHLRVLFQRLIDAQEGR EGETTVVETLRA S
Sbjct:   47 PEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRAAS 84
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1100.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K768_9PHAE1.490e-2385.00FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXA6_ECTSI1.830e-1594.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1100contigD-herbacea_F_contig1100:58618..61011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004640.1
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.4358163-CDS-D-herbacea_F_contig1100:58618..587581622927519.4358163-CDS-D-herbacea_F_contig1100:58618..58758Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 58619..58758 -
1690790213.4354408-CDS-D-herbacea_F_contig1100:58618..587581690790213.4354408-CDS-D-herbacea_F_contig1100:58618..58758Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 58619..58758 -
1622927519.4484239-CDS-D-herbacea_F_contig1100:60905..610111622927519.4484239-CDS-D-herbacea_F_contig1100:60905..61011Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 60906..61011 -
1690790213.4455833-CDS-D-herbacea_F_contig1100:60905..610111690790213.4455833-CDS-D-herbacea_F_contig1100:60905..61011Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 60906..61011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1100.930.1prot_D-herbacea_F_contig1100.930.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1100 58619..61011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1100.930.1

>prot_D-herbacea_F_contig1100.930.1 ID=prot_D-herbacea_F_contig1100.930.1|Name=mRNA_D-herbacea_F_contig1100.930.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=82bp
PEPYSLGHLRVLFQRLIDAQEGRGEGETTVVETLRAISEVVVYGENQDAR
FAAKAAKEAEALLHKGEAVNHSGEEGMVPTEA
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mRNA from alignment at D-herbacea_F_contig1100:58618..61011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1100.930.1 ID=mRNA_D-herbacea_F_contig1100.930.1|Name=mRNA_D-herbacea_F_contig1100.930.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2394bp|location=Sequence derived from alignment at D-herbacea_F_contig1100:58618..61011- (Desmarestia herbacea DmunF female)
CCCGAGCCCTACTCCCTGGGCCACCTGAGAGTCTTGTTCCAGCGGTTGAT
CGACGCGCAGGAAGGGAGGGGCGAGGGGGAGACGACTGTCGTAGAGACTC
TGCGAGGTGAGTGTTTTTTGTTTGTTTTTTTTGTGTACGAGTATTTTTTT
TGTGTACGAGTATTATCGTCTCCTTCGGAAGTGAAAACAAAAAAATGTCG
TCTCCCTAAGTTGTGAAAGATGCTTGATTTGCATTTAGCCGATGAAAGCC
GACGAGGCAAGAAAATGCTACACCCCTTTTCGCGATAAAAATGTACCGTA
GGTACGTACCGTAGCGGGGAGGAGCGAAGCGTGGGTTAGAGAAAGAATAG
GGCGAAGACAATAAATGGGACGAAAAAAACAAAAAAAACGGGCTTTGTTG
GGGTGGGGGGAGGTGTAAAAATTGTGTTTGAGATTGAGCCCGCTTTTAGG
CAATGAGCACCCCGTAGGTACGTACCGTAGCGGGGAGGAACGAAAGGCGC
CCGCTACGTGACCCCGGATCTGAGTCAAAAGGGGATATGGCGCTCGAAAA
ATAGTAGGGCGGAGATAACGAATGGGATACCGTAGTGGGAAGGAGGGAGG
AGCGCCTACTATGTGACCCCGGATCTGAGTTACGAAGAGAGAAGGAGCTG
GAGAAGTATTAGGGCGAAGATACTATCACGAGGACCCATACTAAATAGGC
CCAAAACACTTATTATATTGACTTGTGTATCGCGAGACGGACGGGGCGTG
ACATCACGGATCTCGTTCGTTTCTACTTGGAAGTATGATGTTATTCGGTG
CGGCAGTAGATGTATCAACGATTCTAGAGTTTTATTGTTTGGGGGTGGGG
AGGTGGGGAGGTGGGGGGGGGGGGGGTCGGGAATACGAATACTTGCGCTC
GCTCCTTATTCACCTTGTTTTAGGGCTACAATGGTTGTTACAATGGTTGA
TATGGGCCTCTGTAAATAGATGGGATAACAAAACAGCATTAGCCGTGTCG
TTTTTTTTTTAATGACAGGGGTGGTGCAGTGGTCTAGTGGTTAGGGTGTT
CGCCTCTGTTGGCGGAAGTTGGGGGTTCGATTCCCGGTGGCACTTTTCTG
TGCCATCTTCCGTCGCGGAAAATGCGAGAGCGTGACTAAGCACAATTCGA
TGAAAGTCGACGAGGGAAGAAAGTGCTGCACTCTTCTCGCGACAAAAATG
TAGGCACGTAGCGTAGTGGGAAGGCGGGAGGAGCGCCTGCTATGTGACCC
CGGATCTGAGTTACGAAGAGAGATGGAGTTAGAGAAAGAATAGGGCGAAG
ACAATAAATGGGACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGGGC
TTTGTCGGGGTGGGGGGAGGTGTAAAAATTGTGTTTGAGATTGAGCCCGC
TTTTAGGCAATGAGCGTTGTTGTGGCGAGGAGCAAAGCGTGGGTGATGGA
GGTGAGAAACGTATGGTAGTTTTTGTTTTCGACTGTATCATTGGTTAGCG
TATGTCCTGATTTTTGTTTTTTGCTCCAACAGGATGGCACGAGAAGTTGA
ATGCATTCCAGTTTTTTTTGGCTGCGCTTGTGGTGCGGGCGACATGGTCT
ACATATACATATAGACCTACATACATACCCACGTCCTTCGTATATAGATG
ACCTTCATATGTAAGCACGTACTTCAAGTATATGCATACGATGAACGTAC
ATGCATAGACCTCCTTCATACATACGACCTACAGATACACAGAGCTGGGT
ACATACACCAACGGCCTCGTCAAGCCCTGACACGTAAAGCATGCTAACAT
AACTCCGCACCCTTCGGATCAATCAATCAATCCATCACCTAAGCAAACAA
CCAATCAATCTACCAATCAACAAATCAAAGCAACAAACCAATTGACCAAC
TAATCAATCAATCAATCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCA
GTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGT
CAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCA
GTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGT
CAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCA
GTCAGTCAGTCAGTCAGTCAGTCAGTCAATCAATTAATTAAAAATGTGCT
TGGGGTTCGCCCACTGGTTCCTCCTGTGCCTCCGGTGTACGTATTACCTC
CAGCTATTTCCGAGGTCGTCGTGTACGGAGAGAACCAAGATGCCCGGTTC
GCGGCGAAGGCCGCAAAGGAGGCCGAGGCGTTGCTACACAAAGGAGAGGC
GGTAAATCATTCCGGAGAAGAGGGGATGGTACCAACAGAAGCGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1100:58618..61011-

>mRNA_D-herbacea_F_contig1100.930.1 ID=mRNA_D-herbacea_F_contig1100.930.1|Name=mRNA_D-herbacea_F_contig1100.930.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=492bp|location=Sequence derived from alignment at D-herbacea_F_contig1100:58618..61011- (Desmarestia herbacea DmunF female)
CCCGAGCCCTACTCCCTGGGCCACCTGAGAGTCTTGTTCCAGCGGTTGAT
CGACGCGCAGGAAGGGAGGGGCGAGGGGGAGACGACTGTCGTAGAGACTC
TGCGAGCCCGAGCCCTACTCCCTGGGCCACCTGAGAGTCTTGTTCCAGCG
GTTGATCGACGCGCAGGAAGGGAGGGGCGAGGGGGAGACGACTGTCGTAG
AGACTCTGCGAGCTATTTCCGAGGTCGTCGTGTACGGAGAGAACCAAGAT
GCCCGGTTCGCGGCGAAGGCCGCAAAGGAGGCCGAGGCGTTGCTACACAA
AGGAGAGGCGGTAAATCATTCCGGAGAAGAGGGGATGGTACCAACAGAAG
CGCTATTTCCGAGGTCGTCGTGTACGGAGAGAACCAAGATGCCCGGTTCG
CGGCGAAGGCCGCAAAGGAGGCCGAGGCGTTGCTACACAAAGGAGAGGCG
GTAAATCATTCCGGAGAAGAGGGGATGGTACCAACAGAAGCG
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