mRNA_D-herbacea_F_contig1100.927.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1100.927.1
Unique NamemRNA_D-herbacea_F_contig1100.927.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1100.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1100contigD-herbacea_F_contig1100:10221..10712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.083956-UTR-D-herbacea_F_contig1100:10220..103851622927519.083956-UTR-D-herbacea_F_contig1100:10220..10385Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1100 10221..10385 +
1690790213.178525-UTR-D-herbacea_F_contig1100:10220..103851690790213.178525-UTR-D-herbacea_F_contig1100:10220..10385Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1100 10221..10385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.095769-CDS-D-herbacea_F_contig1100:10385..107121622927519.095769-CDS-D-herbacea_F_contig1100:10385..10712Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 10386..10712 +
1690790213.1884568-CDS-D-herbacea_F_contig1100:10385..107121690790213.1884568-CDS-D-herbacea_F_contig1100:10385..10712Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1100 10386..10712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1100.927.1prot_D-herbacea_F_contig1100.927.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1100 10386..10712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1100.927.1

>prot_D-herbacea_F_contig1100.927.1 ID=prot_D-herbacea_F_contig1100.927.1|Name=mRNA_D-herbacea_F_contig1100.927.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=109bp
MFNIVYCRNKKRATKNVFSQTCNRPLGWALSSMLYNSVWCTAAPICSTHP
SRHPFRCIPQKCPSTYDTTRQFAQLRAHTVVLTGQRRVLLQGFTRRKDWR
YHEQKAWSA
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mRNA from alignment at D-herbacea_F_contig1100:10221..10712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1100.927.1 ID=mRNA_D-herbacea_F_contig1100.927.1|Name=mRNA_D-herbacea_F_contig1100.927.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=492bp|location=Sequence derived from alignment at D-herbacea_F_contig1100:10221..10712+ (Desmarestia herbacea DmunF female)
CTATACTATACAGAACAGATATTAAAAAGAAGTATTTACTACTATTAATA
CTACGATACGAGTACTCCTAGTGCTGTCTGTCTGTGTCAGACAAACTACA
GTACAACAGACTGTAATACTGAATTCTACAAGTGCAACAATATTTGTCAC
GTGTCGTCATGAACGATGTTCAACATCGTTTACTGTAGAAACAAAAAACG
TGCAACAAAGAACGTATTCTCCCAAACATGCAACCGGCCGTTAGGTTGGG
CATTGTCGTCCATGCTTTACAACAGTGTATGGTGCACAGCGGCGCCCATA
TGTTCTACGCACCCAAGCCGGCATCCTTTCCGATGTATACCTCAAAAGTG
CCCAAGTACGTATGATACCACGAGACAATTTGCACAACTTCGCGCGCATA
CAGTAGTACTTACCGGACAACGAAGAGTTTTGCTCCAAGGTTTCACGAGG
CGGAAAGATTGGAGATACCACGAACAAAAAGCTTGGTCCGCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1100:10221..10712+

>mRNA_D-herbacea_F_contig1100.927.1 ID=mRNA_D-herbacea_F_contig1100.927.1|Name=mRNA_D-herbacea_F_contig1100.927.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=654bp|location=Sequence derived from alignment at D-herbacea_F_contig1100:10221..10712+ (Desmarestia herbacea DmunF female)
ATGTTCAACATCGTTTACTGTAGAAACAAAAAACGTGCAACAAAGAACGT
ATTCTCCCAAACATGCAACCGGCCGTTAGGTTGGGCATTGTCGTCCATGC
TTTACAACAGTGTATGGTGCACAGCGGCGCCCATATGTTCTACGCACCCA
AGCCGGCATCCTTTCCGATGTATACCTCAAAAGTGCCCAAGTACGTATGA
TACCACGAGACAATTTGCACAACTTCGCGCGCATACAGTAGTACTTACCG
GACAACGAAGAGTTTTGCTCCAAGGTTTCACGAGGCGGAAAGATTGGAGA
TACCACGAACAAAAAGCTTGGTCCGCTATGTTCAACATCGTTTACTGTAG
AAACAAAAAACGTGCAACAAAGAACGTATTCTCCCAAACATGCAACCGGC
CGTTAGGTTGGGCATTGTCGTCCATGCTTTACAACAGTGTATGGTGCACA
GCGGCGCCCATATGTTCTACGCACCCAAGCCGGCATCCTTTCCGATGTAT
ACCTCAAAAGTGCCCAAGTACGTATGATACCACGAGACAATTTGCACAAC
TTCGCGCGCATACAGTAGTACTTACCGGACAACGAAGAGTTTTGCTCCAA
GGTTTCACGAGGCGGAAAGATTGGAGATACCACGAACAAAAAGCTTGGTC
CGCT
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