mRNA_D-herbacea_F_contig110.920.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.920.1
Unique NamemRNA_D-herbacea_F_contig110.920.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 4.900e-116
Identity = 225/409 (55.01%), Postives = 255/409 (62.35%), Query Frame = 1 
Query:    1 DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRDSKXXXXXXXXXEG-----------------------------------LDPMTYRDAWTQTQ---------GEGRGSERKSLPPAASRSTRGISDGYYYDDGVGDYDDEDGDYAEFXDAEGDDSQYQGWGSTGFSSSSPRGGFDGGGRRRQRE--------------WERVSGTPRPRKRRPAAATRGLEEDRGGSLPGGGGSDARDAFDRRDQEGAMRAG 1053
            DQW H+WGGSD+QRVGKLFEV+AVAFLGLWACYF SFFLG    +++G SFLFYWLLAPN T+FRRNRALRG IAPFPG  GN  AIFSARV SA EEYHP+TGQPVF+RM+IEDEDGRALKFRTRTRAEYARVRPGM AEAVLVS DE FEEI+GVSDTF+P+ANVWVGEYPYLDKV MRRLLASRD K XXXXXXXX                                     LDP+ YRD+WTQT+         G G G    + P  A     G+ +G     G G    + G Y  F + E ++  Y+G GS+GFS +  RG    G R                    ERVSG PRPR+R P AAT       GG   GGGG    ++  RR + GA  AG
Sbjct:   10 DQWSHYWGGSDVQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGARGNSVAIFSARVVSAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAVLVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELDPIAYRDSWTQTRPLDDDLARGGRGGGGPSSAPPAHAGEGASGLPNG-----GTGTVPPDFGAY--FGEREYEEPYYEGVGSSGFSGAERRGMVAAGERSAAGRGXXXXXXXXXXXXXXERVSGKPRPRRRPPTAATSPSRRF-GGQGRGGGGYG--ESGGRRVRGGAKDAG 408
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 7.110e-105
Identity = 190/288 (65.97%), Postives = 216/288 (75.00%), Query Frame = 1 
Query:   37 QRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRDSKXXXXXXXXX-----EGLDPMTYRDAWTQTQ----GEGRGSERK------SLPPA-ASRSTRGISDGYYYDDGVGDYDDEDGDYAEFXDAEGDDSQYQGWGSTGFSSSSPR 852
            QRVGKLFEV+AVAFLGLWACYF SFFLG    +++G SFLFYWLLAPN T+FRRNRAL+G IAPFPG  GN  AIFSARVASA EEYHP+TGQPVF+RM+IEDEDGRALKFRTRTRAEYARVRPGM AEA+LVS DE FEEI+GVSDTF+P+ANVWVGEYPYLDKV MRRLLASRD K XXXXXXXX     E LDP+TYRD+WTQT+       RG          S PPA A     G+ +G     G G    + G Y  F ++E ++  Y+G GS+GFS +  R
Sbjct:   26 QRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALKGSIAPFPGARGNSVAIFSARVASAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAILVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXDADEDEELDPITYRDSWTQTRPLEDDPSRGXXXXXXETGFSAPPAHAGEGEAGLPNG-----GAGTVLPDFGAY--FGESEDEEPYYEGVGSSGFSGAERR 306
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.140e-49
Identity = 91/187 (48.66%), Postives = 129/187 (68.98%), Query Frame = 1 
Query:    7 WEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDED--FEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASR 561
            W ++WG   +QR GK+ E  +VAFLG+WACYFTSFFLG   TS++G  F+FYWLL PN   +R+N   RG++AP P   G   A+FSA +A+  EE +P+TG+   +R+ + DE+GRAL  R     E ARV  GM  E +L+S +    FE+I+GVSD ++P+ ++WVG+YP+L+K+A+RRLL  R
Sbjct:    8 WNNYWG-EGVQRAGKVAESFSVAFLGVWACYFTSFFLGVAITSVIGVVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEVNPITGKAANLRLEVADEEGRALMLRVPAVREAARVEAGMGIEVLLISDEPGGGFEDILGVSDAYIPAIDLWVGDYPHLNKLALRRLLNER 193
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC)

HSP 1 Score: 162 bits (411), Expect = 2.170e-43
Identity = 82/193 (42.49%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:    1 DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGR-IAPFPGGDGNYFAIFSARVASA-----KEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASR 561
            DQW+++WG ++  + GK++E ++  F GLW  +F +F +G  A +++G  FLFYW+LAP   A+RRN + RG   A  P  DG + A+FS RV          EY+    +P  + M +EDE GR L+        Y +VRPGM  E +++S   DF+E++GVSD FVP    WVGEYPY+DKV  +  LASR
Sbjct:   48 DQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASR 236
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC)

HSP 1 Score: 162 bits (411), Expect = 5.920e-43
Identity = 82/193 (42.49%), Postives = 117/193 (60.62%), Query Frame = 1 
Query:    1 DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGR-IAPFPGGDGNYFAIFSARVASA-----KEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASR 561
            DQW+++WG ++  + GK++E ++  F GLW  +F +F +G  A +++G  FLFYW+LAP   A+RRN + RG   A  P  DG + A+FS RV          EY+    +P  + M +EDE GR L+        Y +VRPGM  E +++S   DF+E++GVSD FVP    WVGEYPY+DKV  +  LASR
Sbjct:  101 DQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASR 289
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A6U4L5P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L5P1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.160e-30
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 1 
Query:    1 DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALR-GRIAPFPG----GDGNYFAIFSARVASAKEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYL--DKVAMRRLLASRDSKXXXXXXXXXEGLDPMTYRDA 630
            DQW HFWG ++M R  ++FEV+ V+F GLW  +F +F +G    +L+G  F F+ L+AP   A RRN   R G +  F            A+FS R+   +     + G+   +++ +EDEDGR L+ R      +A V  G L  A+++S D  F  I  VSD F+P+A  W GEYPY+  +++ M+R      ++          G D +  RDA
Sbjct:  110 DQWLHFWGSNEMARASRIFEVALVSFFGLWTTWFLNFAIGPTVGTLIGTVFAFWGLIAPYFAAARRNADFREGLLDSFSSVWRPKRPLKTALFSGRIVRCERVVSDLKGRRFMLKLELEDEDGRLLQVRAPLHDRHADVMEGQLGLALMISEDPSFSTIERVSDVFIPAAQTWAGEYPYVRWERLPMQRQWRRNPAQSRRVNPSARSG-DALPRRDA 325
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A7S3P7K6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.610e-25
Identity = 70/218 (32.11%), Postives = 115/218 (52.75%), Query Frame = 1 
Query:    1 DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRN-RALRGR--IAPFPGGD----GNYFAIFSARV--------ASAKEEY---------------HPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRD 564
            +Q+  +WG +  +R G++ E S V+FLG++  YF SF +G    +++G  F F+ +L+P   A +RN   L GR  + P+ GGD    G Y A++   V        ++   EY                  TG+P  +R+ + D  GR L+  TR   EY  ++  M   A+L+S    F+++  ++D FVP A+ W+G+YPYL++V ++ LLA  D
Sbjct:  114 EQYATYWGRTPQERYGRILESSIVSFLGVFFSYFLSFVMGGFVATILGTLFFFWGILSPQFKAAQRNWEFLGGRQLVDPWKGGDPDGAGLYGALYLGFVDDVCVVEQSTDTREYDLADFEDYTMETDDLEQYTGEPYLLRVRLRDSKGRELQIHTRMSEEYLDIQTKMPVMAILLSTRRKFDKLAAITDLFVPEADCWIGDYPYLNRVEVQSLLAEDD 331
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A1Z5JCW8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCW8_FISSO)

HSP 1 Score: 107 bits (266), Expect = 6.880e-23
Identity = 68/222 (30.63%), Postives = 106/222 (47.75%), Query Frame = 1 
Query:    4 QWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRN-RALRGR---------IAPFPGGDGNYFAIFSARVASAK-----------------------EEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYA--RVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRD 564
            Q+  + G +  +R G+L E S V FLG++  YF SF +G    +L+G  F F+ +L+P   A++RN   L GR             P   G Y A+F   +A                          +E   +TG+P  +R++  D  GR L+  TR   EY    +  G+   A+L+S   +F  + G++D +VP  N+W+G+YPYLD+  M  +LA  D
Sbjct:   45 QYSVYIGRTPRERFGRLIESSIVGFLGVFFSYFLSFVIGGFFATLLGCIFFFWGILSPEFQAYQRNWEFLGGRPLVDMEDTAAKKDPDKTGLYSALFVGHLADLAVVEDAISDVEYDLDDFRDYTMDGDELEKLTGRPYLLRVLARDRTGRELQIHTRMSEEYVDGALETGLPVTAILLSTKRNFSRLAGITDLYVPDVNLWLGDYPYLDREHMEAMLAEDD 266
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A7S2SNZ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNZ0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.550e-21
Identity = 70/212 (33.02%), Postives = 107/212 (50.47%), Query Frame = 1 
Query:    4 QWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEE--------YHP---MTGQPV----------FMRMI-IEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRD-EDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRDSK 570
            Q E F G ++ ++   + + + VAFLGLW  YF SF +GS   ++ GA F    LL P   A++R   +RG     P   G    +FS  V S + E        + P   + G P+          F  ++ I+DE GR L  R      +ARV PGM  E V+ +   E+F++++G +D ++P A VW G YPYLD+   +  LA++D +
Sbjct:   82 QLEWFSGNTEREKFEVVLQTTFVAFLGLWGSYFVSFVVGSPLATISGAFFSMNGLLRPIFLAYQRAVKVRGYDPEVPHIAG----LFSGEVLSCETETRDAPVRVFEPSDRLVGSPLPPLKAPPPRRFESILRIQDESGRRLVVRAPRTKAHARVEPGMRVEVVIFAEGIENFDQVIGATDAYIPEAAVWFGSYPYLDRNEFKSFLAAQDRR 289
[Close]
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Match: A0A7S0CDT2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDT2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.330e-20
Identity = 67/235 (28.51%), Postives = 103/235 (43.83%), Query Frame = 1 
Query:    4 QWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGASFLFYWLLAPNTTAFRRNRALRG-------------------------RIAPFPGGDGNYFAIFSARVASA-------------------------KEEYHPMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDEDFEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLAS 558
            Q+  +WG +  +    +FE  AV  LGL+  YF SF +G G  +L+GA F F+ LL P   A++RN    G                               G  G Y + + A V++                          K++   +TG P  +R+ I+D  GR+++   R   EY  ++ G     V +S D  FE + G++D FVP A  +VG+YPYLD+  + R+L S
Sbjct:  115 QYGTYWGRTSRETYNAVFESVAVTVLGLFGSYFLSFVIGDGLATLMGAVFAFWTLLGPELKAYQRNWEFVGGRPLIDQWMDDEIMDNTFDIFGDEKEKGERAGNGGMYGSYYIAHVSNVGVVGNVNVLPSEEYPLSEFYDYTMEKDDAERITGLPWMIRLRIKDNSGRSMQVHARMSEEYLDIQEGQPVVCVFLSSDRSFEMLSGLTDFFVPDAGCYVGDYPYLDRPYLNRMLES 349
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJB0_9PHAE4.900e-11655.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW7_ECTSI7.110e-10565.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT15_9STRA5.140e-4948.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z4E0_NANGC2.170e-4342.49Putative membrane protein n=1 Tax=Nannochloropsis ... [more]
K8Z4B4_NANGC5.920e-4342.49Putative membrane protein n=3 Tax=Monodopsidaceae ... [more]
A0A6U4L5P1_9STRA1.160e-3034.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3P7K6_9STRA2.610e-2532.11Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JCW8_FISSO6.880e-2330.63Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2SNZ0_9STRA2.550e-2133.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0CDT2_9STRA4.330e-2028.51Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:760845..765466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue3.1e-86
Seed eggNOG ortholog2880.D8LTW7
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E2W9@1,2SA2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004040.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1055
Cds size1053
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.920.1prot_D-herbacea_F_contig110.920.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 760845..765466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.4481418-CDS-D-herbacea_F_contig110:760844..7613661622927518.4481418-CDS-D-herbacea_F_contig110:760844..761366Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 760845..761366 -
1690790212.8119888-CDS-D-herbacea_F_contig110:760844..7613661690790212.8119888-CDS-D-herbacea_F_contig110:760844..761366Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 760845..761366 -
1622927518.4619098-CDS-D-herbacea_F_contig110:763480..7635791622927518.4619098-CDS-D-herbacea_F_contig110:763480..763579Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 763481..763579 -
1690790212.8217688-CDS-D-herbacea_F_contig110:763480..7635791690790212.8217688-CDS-D-herbacea_F_contig110:763480..763579Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 763481..763579 -
1622927518.475195-CDS-D-herbacea_F_contig110:764038..7641761622927518.475195-CDS-D-herbacea_F_contig110:764038..764176Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 764039..764176 -
1690790212.8301501-CDS-D-herbacea_F_contig110:764038..7641761690790212.8301501-CDS-D-herbacea_F_contig110:764038..764176Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 764039..764176 -
1622927518.4879475-CDS-D-herbacea_F_contig110:764894..7650411622927518.4879475-CDS-D-herbacea_F_contig110:764894..765041Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 764895..765041 -
1690790212.8401515-CDS-D-herbacea_F_contig110:764894..7650411690790212.8401515-CDS-D-herbacea_F_contig110:764894..765041Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 764895..765041 -
1622927518.5002577-CDS-D-herbacea_F_contig110:765319..7654661622927518.5002577-CDS-D-herbacea_F_contig110:765319..765466Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 765320..765466 -
1690790212.8500733-CDS-D-herbacea_F_contig110:765319..7654661690790212.8500733-CDS-D-herbacea_F_contig110:765319..765466Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 765320..765466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.920.1

>prot_D-herbacea_F_contig110.920.1 ID=prot_D-herbacea_F_contig110.920.1|Name=mRNA_D-herbacea_F_contig110.920.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=351bp
DQWEHFWGGSDMQRVGKLFEVSAVAFLGLWACYFTSFFLGSGATSLVGAS
FLFYWLLAPNTTAFRRNRALRGRIAPFPGGDGNYFAIFSARVASAKEEYH
PMTGQPVFMRMIIEDEDGRALKFRTRTRAEYARVRPGMLAEAVLVSRDED
FEEIVGVSDTFVPSANVWVGEYPYLDKVAMRRLLASRDSKRRSDDDDEEE
GLDPMTYRDAWTQTQGEGRGSERKSLPPAASRSTRGISDGYYYDDGVGDY
DDEDGDYAEFDDAEGDDSQYQGWGSTGFSSSSPRGGFDGGGRRRQREWER
VSGTPRPRKRRPAAATRGLEEDRGGSLPGGGGSDARDAFDRRDQEGAMRA
G
back to top

mRNA from alignment at D-herbacea_F_contig110:760845..765466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.920.1 ID=mRNA_D-herbacea_F_contig110.920.1|Name=mRNA_D-herbacea_F_contig110.920.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4622bp|location=Sequence derived from alignment at D-herbacea_F_contig110:760845..765466- (Desmarestia herbacea DmunF female)
GACCAGTGGGAGCACTTCTGGGGCGGCTCGGACATGCAGCGGGTCGGCAA
GCTTTTTGAGGTGTCCGCGGTCGCGTTCCTGGGATTGTGGGCGTGTTACT
TCACGAGTTTTTTCTTGGGCTCAGGGGCGACGTCTTTGGTTGGAGCGGTA
AGCCGTGCAAATCGACGAAACTGCTACCGGTAACGTGTTCGAACAAACGA
TATTTTAACACGACGTATGTAGCGTCCAGCCCAACAACAACATTGGTGGT
CCGTGCCAACCTATAGATGGAACCGCCCCCCGCCCCGCCCCCAGGCTGTT
ATTAATAGCAAGAACCCACTGTTACTTGCCAATCTCCAAAGATGAATTTA
TACCCCGTAATTCCGCCCCGCCCCCGTGTCTACCTTTTCCGCACGTTTTC
ACTCCGACGATGACCACGACTAAAGTCTTTCCTGTTCTATTGGTTGTTGG
CGCCGAACACGACCGCCTTTCGCCGAAATCGTGCTTTGCGAGGGAGGATT
GCCCCCTTTCCGGGAGGAGACGGGAACTATTTTGCCATCTTCAGTGCTCG
CGTGGCTAGTGCAAAAGAAGAGGTGTGTGTTTGGGATGGGGGGGGGGGGG
TGCTCATTTGTTGCTTGCCTTAGTCTTTCGACCATTGACCACGCATCCCT
TTCCAGACGGAGCACCGTTCCTACTCCTAATAGAGGCACCTCCAACATTT
GGGCGCTCTACGTGTTTCCATATCTTAGCATAAACACCTTTTGCTTGTCT
TATCCCCTTCCTGTTTCGCCTTTTGTGGCCACCATCTATCTCCTAGGTTA
GCGATCGTTTTCTCGCGACTATCTAGTGTACCAAACTTGTCCATGTGTTG
GGGGGGGTACGTAAATGGGCTGTAGCACTGTGGCTTGGAAAGTGTGCCAG
TCCGGATGATGACACGTATGATAGAGTCCGATAATCGAAAAAAGCGATGC
CGTATTTGGTTGTTTGGTAGGGTGTTTTGTTTCGCGTTTTGGGGGGAATG
TGTACCAGTGTACCAGTAGTTAGATGGTCGACTAAAACCACGTTCCCGTG
AAATATTTTATTCGTGGTCCCTCGGGGTAGCTGTTGCCCCCCCCTCCCCA
GGGGGGGGGTGGGGGCACACTACCCTGTTGTTTTTGTTTATTAAGCTGAG
TTTTACGTCTACGAAGTATAGGCTATTTATTACACATAGAACAGTAGTAC
ACAGCTTTTGTCTTGTGTTTTGGTCGAAAAATATTGTGCGGCGCGTCCCC
TAACACCACCTCCCCCCCCTCCGGTGCGTGCTGTCGACAGTACCACCCGA
TGACGGGACAACCCGTGTTCATGCGCATGATTATCGAAGACGAAGACGGA
CGGGCGCTCAAGTTCCGCACTCGCACAAGGGCGGAGTACGCGCGTGTCCG
TCCTGGCATGCTGGCGGAGGCTGTCCTGGTGGGTTGTTTGGCAATGCGAA
TGTGCAAAGCTAAAAAACGTCTGGTCTGCAGGAACGGTTTCCCCCCCCCC
CTCCCCCGCCCCCCGTGTTGTATGAAATATCTGAAACACGAGTGTCTATG
GTCATACGACTACGGCCATGCATGAAATGAGTACACCCCCGCCGTGCTGT
ATGAGCGGAGTCTTGCGGGTTTTCGGCGAGGGTAGGGGGGGGGGCTGGGG
CGAGCAAAAGCAGTTTATGTAAGATACGGCAAAAGCGTGAAGAGCGCCCA
AATGTTGGAGGTGTCTCTGTTAGGAGTTGGAACGGTGCTCCGTCTCGAAA
GGGATGCGTGGTCAATGGTCAAATTACTTAAGGCAAGCAACAAATGAATA
CGCGCCCCCCCCCCCGCGGGCCGCCGCCCCAACCAACCCCGCCTTATCAT
GTAATGCCCTTGTTTTTCGTGCTATCATGGTTCTCAGGTGAGCCGTGATG
AGGATTTCGAGGAAATTGTCGGGGTTTCCGATACCTTCGTCCCGTCTGCA
AACGTCTGGGTCGGCGAGTACCCTTACCTTGACAAGGTGAGAACTATTTT
TGTTTTTTTTGTCCGTTAGCCGATGGTTCTATTATTGAGTAGACGTTGTT
TGTTGAAACGAGGCAATGATCAATCATCGCCTGTTATTGCCCCCGATTGA
GGTGCATTCGCGGGCTCTTCCCCTGTGTATGTTATATATACACCTATATA
CGATTGTCCCAAATGGCTGACAGGGCACCAAATCAAAATTCTGTACTTAC
AGCGAGTGTTTTATATCGAGTCTGGACATAAGCGGCATCGTGGTGGCATC
GCGATGCCCGCCGAAAAGAGCCGCGGAGATTCGGGTGTTTTCTCTTCTTT
CTTCCCCAAGATACGCAAAATCATACGAAGGGTCTACCACAAGAGCCAGA
GTTCGTGTATTTATTTTATAGGCTTTACAACAACAGTAGTAGTATCATGA
GTACGCTCCTAGCTGGGGTGGATGCATAAGAAGGGAGGCCTGGCTGGTGT
GCCCGGCAGAGTCCCTGCTAGTTGCATAGCTATGCACCTGCGTGATGTGA
TGAGTGGAAGATTGCAGCAATCAATGCCTTTGTGTTCGTATGATATACCA
ACCGGTAACTCGCTGTGGTTCTTCATGAAATACAGTCAGTAGCTACCATG
TGAGGGTTATGCGGCTGGACCAACAACTCGTACAGCTTCAGCAACAGATA
AACGACGATAAAGACAATATGTTATACACGAAAGGAGGGGCGGATGCATA
AGAAGGGAGGGCTAGCTAGTGTGACCAGCAGAGTGCCTGCTGGCAATAAA
GTGGTGGCACAGGGAATGCTGGCTATCATAGAGAGAGACGATGTGAGATA
GATGCAGTGCGAGGTAACGGAGAAACCTCATCATATGACTGTTGTACCAC
TATTATACCATCACAACACCGGGGGGAAAAACAAAGTGAAAAAGAAAAAA
ACGAATAACAGCAGCAATCAATATATTATTAAGCTGTGTACTGATAAGTT
TGCTCTGTACTCCCTGTAGCCTGAGTTCGAATCCGCATGGTGTCGTCTTT
TTTTCTGAAGCCACGGGTACTTCTACTACATACACCAGGTCCTACTCCTG
TACTACTACTATTATACTACTATTACTTCTCCTGTACTTTCTACAGGTAT
CTTTTATAGCGTATCATTCTACTGTGTGATGTGGCCGTACTGTACTCCTG
TACTACTGTAGTATTGTAGTCCTGCTGCGGTACTATACTATCGGAGACCG
TAGAATATTGGCAAACTGCGCTTAGATACAAGAAACGCCTACCATTTGGG
GATGATATAATAATATTAATATTATCAGTGCCATGTCTCCTGCTTGGGTT
TCGTGTCGCCTCTAATGTTTAAAGCACGTTGAAAGCACGCACGTGTAACT
CTTTAGGCACGATGTTTACGCCATCGACACGTTGCCTGCGGATTTCCTTC
CAAACCCTTGGCATGCGCCCTAAAATCCTGCGAGCCTGCCGGGCAGTTCA
CTGCCCGGCAGGCGCCCTTGTATATGTATATATATTACAAGTATGCGAAG
CGGGACAGATCTCTTTCTGTATTTGTACTCGTCGTATGGAAACTGCTTAA
TTTGCTAGCTGGTACTGCTGTTGGTGCTGCTGCTTGGCTTGTGCCATAGT
GTTGCTGCTGCTGTGTGTGTTGGCGCCCTCGTGCTTCGAGAAGGGCTTTA
GGGCGTGATTGAGAGAGGGAGGCGGGTTTTCATAGTCGTAGGGAAGCACA
TATTTCCTGCGTGAAAATTGCCCATTATAGTGTGTGATCGTACCGCTCGT
ACTCGTAGAAATGTGCAGAGCGCGACAGCTCTCTTTCTCTCTCTCTGGTA
TATGTACTCGTATGGAAACGTCTTCATTTATTGCTGGTACTGCTGTACGT
AATTATCGCTATTTGTTTATCGTGCAGCTCGTGCTGGGTGAAACAGAGAG
CCAAAGCCCTGTGCGGCTACGACTATCACACTTGTGATAAGGCAGAGGCT
GCGCGTGTGGAATCACGCAAAGATTTGTTTTGCACGAACGCAAATAAACG
TAAGAATGCGTTTTATTTATTGATTTATTTATTTATGGTTCCTCCTCGCG
TTCCGTGCGGTTTTTTGATATGGCGACTATTGTTTTACTCGCCTGCGGAG
GTGGCAATGCGGCGCCTGCTCGCCAGCCGGGATTCGAAGCGACGATCGGA
TGACGACGACGAAGAAGAGGGGTTGGACCCGATGACCTACCGCGATGCAT
GGACGCAGACTCAAGGAGAAGGAAGAGGGAGCGAGAGGAAATCGCTTCCC
CCCGCCGCCTCTCGATCGACGCGTGGCATCTCAGATGGTTACTATTACGA
TGACGGAGTGGGTGATTACGATGATGAAGATGGCGACTATGCCGAGTTCG
ACGATGCAGAAGGGGACGACTCTCAGTACCAGGGTTGGGGTTCCACCGGG
TTTTCGTCTTCTTCTCCCCGTGGAGGTTTTGACGGCGGCGGAAGGCGGCG
GCAACGCGAGTGGGAAAGGGTGTCGGGGACGCCCAGGCCGCGAAAGCGAC
GGCCGGCGGCAGCAACGCGGGGTTTGGAAGAAGATCGGGGAGGTTCTCTT
CCCGGCGGTGGCGGTAGTGACGCGAGGGACGCGTTTGATAGGAGGGACCA
GGAAGGCGCGATGCGGGCTGGG
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig110:760845..765466-

>mRNA_D-herbacea_F_contig110.920.1 ID=mRNA_D-herbacea_F_contig110.920.1|Name=mRNA_D-herbacea_F_contig110.920.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2106bp|location=Sequence derived from alignment at D-herbacea_F_contig110:760845..765466- (Desmarestia herbacea DmunF female)
GACCAGTGGGAGCACTTCTGGGGCGGCTCGGACATGCAGCGGGTCGGCAA
GCTTTTTGAGGTGTCCGCGGTCGCGTTCCTGGGATTGTGGGCGTGTTACT
TCACGAGTTTTTTCTTGGGCTCAGGGGCGACGTCTTTGGTTGGAGCGGAC
CAGTGGGAGCACTTCTGGGGCGGCTCGGACATGCAGCGGGTCGGCAAGCT
TTTTGAGGTGTCCGCGGTCGCGTTCCTGGGATTGTGGGCGTGTTACTTCA
CGAGTTTTTTCTTGGGCTCAGGGGCGACGTCTTTGGTTGGAGCGTCTTTC
CTGTTCTATTGGTTGTTGGCGCCGAACACGACCGCCTTTCGCCGAAATCG
TGCTTTGCGAGGGAGGATTGCCCCCTTTCCGGGAGGAGACGGGAACTATT
TTGCCATCTTCAGTGCTCGCGTGGCTAGTGCAAAAGAAGAGTCTTTCCTG
TTCTATTGGTTGTTGGCGCCGAACACGACCGCCTTTCGCCGAAATCGTGC
TTTGCGAGGGAGGATTGCCCCCTTTCCGGGAGGAGACGGGAACTATTTTG
CCATCTTCAGTGCTCGCGTGGCTAGTGCAAAAGAAGAGTACCACCCGATG
ACGGGACAACCCGTGTTCATGCGCATGATTATCGAAGACGAAGACGGACG
GGCGCTCAAGTTCCGCACTCGCACAAGGGCGGAGTACGCGCGTGTCCGTC
CTGGCATGCTGGCGGAGGCTGTCCTGTACCACCCGATGACGGGACAACCC
GTGTTCATGCGCATGATTATCGAAGACGAAGACGGACGGGCGCTCAAGTT
CCGCACTCGCACAAGGGCGGAGTACGCGCGTGTCCGTCCTGGCATGCTGG
CGGAGGCTGTCCTGGTGAGCCGTGATGAGGATTTCGAGGAAATTGTCGGG
GTTTCCGATACCTTCGTCCCGTCTGCAAACGTCTGGGTCGGCGAGTACCC
TTACCTTGACAAGGTGAGCCGTGATGAGGATTTCGAGGAAATTGTCGGGG
TTTCCGATACCTTCGTCCCGTCTGCAAACGTCTGGGTCGGCGAGTACCCT
TACCTTGACAAGGTGGCAATGCGGCGCCTGCTCGCCAGCCGGGATTCGAA
GCGACGATCGGATGACGACGACGAAGAAGAGGGGTTGGACCCGATGACCT
ACCGCGATGCATGGACGCAGACTCAAGGAGAAGGAAGAGGGAGCGAGAGG
AAATCGCTTCCCCCCGCCGCCTCTCGATCGACGCGTGGCATCTCAGATGG
TTACTATTACGATGACGGAGTGGGTGATTACGATGATGAAGATGGCGACT
ATGCCGAGTTCGACGATGCAGAAGGGGACGACTCTCAGTACCAGGGTTGG
GGTTCCACCGGGTTTTCGTCTTCTTCTCCCCGTGGAGGTTTTGACGGCGG
CGGAAGGCGGCGGCAACGCGAGTGGGAAAGGGTGTCGGGGACGCCCAGGC
CGCGAAAGCGACGGCCGGCGGCAGCAACGCGGGGTTTGGAAGAAGATCGG
GGAGGTTCTCTTCCCGGCGGTGGCGGTAGTGACGCGAGGGACGCGTTTGA
TAGGAGGGACCAGGAAGGCGCGATGCGGGCTGGGGTGGCAATGCGGCGCC
TGCTCGCCAGCCGGGATTCGAAGCGACGATCGGATGACGACGACGAAGAA
GAGGGGTTGGACCCGATGACCTACCGCGATGCATGGACGCAGACTCAAGG
AGAAGGAAGAGGGAGCGAGAGGAAATCGCTTCCCCCCGCCGCCTCTCGAT
CGACGCGTGGCATCTCAGATGGTTACTATTACGATGACGGAGTGGGTGAT
TACGATGATGAAGATGGCGACTATGCCGAGTTCGACGATGCAGAAGGGGA
CGACTCTCAGTACCAGGGTTGGGGTTCCACCGGGTTTTCGTCTTCTTCTC
CCCGTGGAGGTTTTGACGGCGGCGGAAGGCGGCGGCAACGCGAGTGGGAA
AGGGTGTCGGGGACGCCCAGGCCGCGAAAGCGACGGCCGGCGGCAGCAAC
GCGGGGTTTGGAAGAAGATCGGGGAGGTTCTCTTCCCGGCGGTGGCGGTA
GTGACGCGAGGGACGCGTTTGATAGGAGGGACCAGGAAGGCGCGATGCGG
GCTGGG
back to top