mRNA_D-herbacea_F_contig110.914.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.914.1
Unique NamemRNA_D-herbacea_F_contig110.914.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A6H5JT33_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT33_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 8.180e-85
Identity = 320/751 (42.61%), Postives = 377/751 (50.20%), Query Frame = 1 
Query:   46 TCGDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSRIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAVEGNKPPASLATMTTRAAAGSSSSSYRAELGEWKGMGQVDGGGGDGSFCGESGDAFR-------EYGVEEG-GEDSKF-FPPAVAVGGGGAAGVV----YADTEPGTAG----AAFLPSRLLPRKRKLVGLDGERII-IXXXXXXXXXXXXXXXXXXXXXXXXXAVVKHEVVGLVKQEIVDDERPSEAVAXXXXXXXXXXISNPAQAPVPSPPQPLVVEGSGVPGG------EFLQGFTDQFLSLESSPTSSYVMLADGVEAASGEKNVFGENGAVGGGDERRTGDVSDFRGGNSNGSYAGAIVAEGDVGVGGVRANGSAALSASDDRGNSCCGGGGKS------GLSTGRVVGYPEEDESHIDICGHGVVPLTSGQDVVEPAASA---VPVVVSAVVVDPLARSDVAVAAPQ-VPKAEGAAMAMTRKGVIPPVP----PHLKEGLSALMQHPTFLAALVGQQGNNSNGXXXXXXTPVAMTKENKAPRPTSAPTDETALPTVDHMVIGDGGEDPPTRCSGTGIARSDTSGTVTGTXXXXXXXXXXXXXX---CFALRSQGHGGFGKQLLPRSEGACA 2175
            TCG+ T R QPRRRA       + +EPIFLRKTFEM+ +C      +LA W+  GETF+VK PD FS V+IPKFFKHSKFSSFVRQLNFYGFRKVKS+ +  G +SKWWEFKHDLFHRD+ HLL+DMRRATHYGV  DKQEVE LRSEVTRLRSHI DMGDKIGQLTSLVE+L+VEG+    S    T    AG  + S+R         G     GGD   CG      R         G +EG GED +F  PPAV     GA GV       D E G A      +FLP R   RKRKLV  DG         XXXXXXXXXXXXXXXXXXX   AV+K E+   VKQE+V D  P +A +           ++ +  P+   P   +V G G  GG      EFL GF DQFLS E SPT+SY ML D   A  G+                 T D   F      G++   +      G  G RA    A       G    GG          G   GR   +  E++ +++ C  G    +S   +  P  S         SAVV   L +          V  A G +         PP P      LKEGLS LMQ+P  LAAL  +Q ++ +       +P      N AP   +A   + A       V   G   P TR      A S         XXXXXXXXXXXXXX   C + RS+G G FG Q  PRSE ACA
Sbjct:    3 TCGEYTTRAQPRRRAE-----MAAQEPIFLRKTFEMVSACSKSDGENLACWSPTGETFIVKHPDAFSSVVIPKFFKHSKFSSFVRQLNFYGFRKVKSKASGAGVNSKWWEFKHDLFHRDKSHLLADMRRATHYGVAADKQEVEQLRSEVTRLRSHIHDMGDKIGQLTSLVESLSVEGHA--GSGGDTTVEGPAGQLAVSHR--------RGPTPPPGGD-ELCGVRAGLGRLSFGFDAAAGDQEGDGEDLRFSLPPAVPA---GACGVPDRSDLEDVEVGLADDPALGSFLPLRARSRKRKLVRFDGVLANGSGSGXXXXXXXXXXXXXXXXXXXHSPAVIKQEMA--VKQEMVVD--PMDAESELAGGGDLGAFASNSTPPLAETPSAELVSGFG--GGSSSSSNEFLHGFADQFLSTE-SPTASY-MLPDRGGAGDGDFTAAS------------TSDDVAFSAAAMTGNWTSVV-----QGGAGCRACSCVAPDGGSLNGRGSGGGTDNXXXXXXXGTRDGRQARHAMEEDFNVETCETGQTDESSIPSIPSPPPSLSLNTRSGQSAVVQRALQQQQTQQQQLHAVEDARGKSSGAAGPSPFPPPPLRTGEELKEGLSTLMQNPALLAALTEKQRSSYSESGSNRSSPT----NNSAPTAAAAGP-QMAESDARATVAEKGQARPRTRSGAVAAAASXXXXXXXXXXXXXXXXXXXXXXXXXXCSSGRSRGRGEFG-QRFPRSEEACA 703
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: D8LTY4_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY4_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 2.390e-79
Identity = 172/308 (55.84%), Postives = 195/308 (63.31%), Query Frame = 1 
Query:   46 TCGDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSRIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAVEGNKPPASLATMTTRAAAGSSSSSYRAELGEWKGMGQVDGGGGDGSFCG-ESGDAFREYGV-------EEGGEDSKF-FPPAVAVGGGGAAGVV----YADTEPGTAGA-----AFLPSRLLPRKRKLVGLDG 915
            TCG+ T R QPRRRA       + +EPIFLRKTFEM+ +C      +LA W+  GETF+VK PD FS V+IPKFFKHSKFSSFVRQLNFYGFRKVKS  +  G +SKWWEFKHDLFHRD+ HLL+DMRRATHYGV  DKQEVEHLRSEVTRLRSHI  MGDKIGQLTSLVE+L+VEG+    S    T    AG  ++S+R         G     GGD   CG  +G     +G        EE GED +F  PPAV     GA GV       D E G   A     +FLP R   RKRKLV  DG
Sbjct:    3 TCGEYTTRAQPRRRAE-----MAAQEPIFLRKTFEMVSACSKSDGENLACWSPTGETFIVKHPDAFSSVVIPKFFKHSKFSSFVRQLNFYGFRKVKSNASGAGVNSKWWEFKHDLFHRDKSHLLADMRRATHYGVAADKQEVEHLRSEVTRLRSHIDAMGDKIGQLTSLVESLSVEGHT--GSGGDTTAAGPAGQLAASHR--------HGPTPPPGGD-ELCGVRAGLGRLSFGFDAAAGDQEEDGEDLRFSLPPAVPA---GACGVPDRSDLEDVEVGLGEADPALGSFLPLRARSRKRKLVRFDG 291
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A6H5L567_9PHAE (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L567_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.640e-55
Identity = 106/174 (60.92%), Postives = 129/174 (74.14%), Query Frame = 1 
Query:   52 GDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSRIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAVE 573
            G  TMR QPRRR      +  K+EPIFLRKT+EMI +C+       A WT  G+TFV+KDPD F+  +IP+FFKH+KFSSFVRQLNFYGFRKVKS I  +G DSKWWEFKHDLF RD+P+LLS++RRATHYGVT +KQEV+ LRSEV  LR  + DM  +I  L+ +V+ L  E
Sbjct:    5 GSYTMRAQPRRR------KDVKDEPIFLRKTYEMINTCEDVH----AAWTAAGDTFVIKDPDTFANEVIPRFFKHNKFSSFVRQLNFYGFRKVKSNITVDGQDSKWWEFKHDLFLRDKPNLLSEIRRATHYGVTPEKQEVDDLRSEVGSLRLQVVDMDGRIDALSRMVDRLLEE 168
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A836CRK9_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRK9_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.160e-46
Identity = 96/186 (51.61%), Postives = 127/186 (68.28%), Query Frame = 1 
Query:   46 TCGDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSRI---------ASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAVEG 576
            T GD TMR QPRRR  +       +EP+FLRKT+EMI +CD+     LA W+  G+TF++K P+ F+  +IP FFKHSKF+SFVRQLNFYGFRKVKS +         A++   S+WWEFKHDLF RD PHLLS +RRATHY V   ++EV+ L+ EV+ L++ I  M ++I  LT+L E +  +G
Sbjct:    3 TMGDYTMRAQPRRRKEQ-----QGDEPVFLRKTYEMINTCDTS----LASWSARGDTFIIKSPERFAAEVIPTFFKHSKFASFVRQLNFYGFRKVKSALPLGARERSAAADADTSQWWEFKHDLFARDAPHLLSAIRRATHY-VAPPEKEVDALKGEVSTLQARIVTMDERISSLTTLPEPVYEDG 178
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A835YK43_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK43_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.300e-45
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = 1 
Query:   52 GDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSRIASEGCDSK-WWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEAL 564
            G+ TMR QPRRR       S  +EP+FLRKT++MI SCD      LA W+  G+TFV+KDPD F+  +IP FFKHSKFSSFVRQLNFYGFRKVK+    +   +  WWEFKHDLF R  PHL+++++RATHY V   + EV+ LR+EVT L   +  M  +I  L++LV+ L
Sbjct:    6 GEYTMRAQPRRRKESA---SRGDEPVFLRKTYDMINSCDQT----LAGWSAKGDTFVIKDPDRFAAEVIPTFFKHSKFSSFVRQLNFYGFRKVKALDGRDAAAAAGWWEFKHDLFTRATPHLIAEIKRATHY-VAPPEAEVDALRTEVTTLTERMLAMDARIAALSALVDEL 169
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A6S8RFZ1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8RFZ1_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.590e-38
Identity = 80/177 (45.20%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:   52 GDCTMRTQPRRRASEGSGRSSK--EEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKS---RI-ASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEAL 564
            G  T ++  ++RA   SG+  K  + PIFL+KT+ MI SCD+     +A W+++G TFVVKDPD+F++ +IP+FFKH+ FSSFVRQLNFYGFRK+K+   R+   +G DS++W F+H+ F R RP LLS++R+A H     D++EV  L+SEV++LR  +  M   + ++T++++ +
Sbjct:   91 GSVTTKSTTKKRAKPASGKKKKSVDSPIFLQKTYHMIDSCDAS----IATWSEDGSTFVVKDPDIFAKQVIPQFFKHNNFSSFVRQLNFYGFRKIKNDPIRLRGDDGPDSRYWRFRHEYFLRGRPDLLSEIRKANH-SQGADQEEVNALKSEVSQLREQLSTMQADMEKVTAMMQIM 262
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A7S1GQW1_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQW1_CYCTE)

HSP 1 Score: 153 bits (387), Expect = 4.350e-37
Identity = 78/160 (48.75%), Postives = 110/160 (68.75%), Query Frame = 1 
Query:  106 RSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKS-----RIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAV 570
            + ++  PIFLRKT+ MI +CD+     +A W+++G TFVVKDP+ F+  IIP+FFKH+ FSSFVRQLNFYGFRK+KS       A    +SKWW F+H+ F R RP LL ++R+A     + DKQEV+ L++EV  LR+ + +M   I +LT+LV+ + V
Sbjct:   44 KDAENAPIFLRKTYHMIDTCDTA----IATWSEDGTTFVVKDPEKFAAEIIPQFFKHNNFSSFVRQLNFYGFRKIKSDPIKINTAINDIESKWWRFRHEKFQRGRPDLLGEIRKANQTE-SPDKQEVDALKNEVKDLRARMANMATDIDKLTALVKNMMV 198
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: W7U925_9STRA (Winged helix-turn-helix transcription repressor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U925_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.760e-36
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = 1 
Query:  103 GRSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKS--RIASEGCDS-----------------KWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEALAV 570
            G   +++P+FLRKT++M+ SC       +A W+  G++F++KDPD F++ +IP++F H+ FSSFVRQLNFYGFRKVK   R+   G ++                 KWWEF+HD F R +P LL+ +RRATH G + ++QEV HL++EV +L+  I +M   I +LTSLV+ L V
Sbjct:   74 GIGGRDQPLFLRKTYQMLESCSPS----IAAWSGKGDSFLIKDPDSFAQTVIPQYFSHNNFSSFVRQLNFYGFRKVKQDVRVLQGGSNAXXXXXXXXXXXXXXXXAKWWEFRHDKFIRGKPQLLAQIRRATH-GAS-NEQEVSHLKTEVGQLKDRIQEMSSDIDRLTSLVQGLMV 242
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A7S2V607_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V607_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.840e-36
Identity = 63/142 (44.37%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:  145 FEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKSR--IASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVEAL 564
            +EM+ +CD      +  W ++G+TF VKD D F++++IP+FF H KFSSFVRQLNFYGFRK+KS   + +   +++WWEFKH+ F +DRP LL++++RATH+  T + ++++ +++E+  ++  +  M D I +LTSLV  L
Sbjct:    1 YEMVSNCD----ISICSWAEHGKTFFVKDADTFAKLVIPQFFNHKKFSSFVRQLNFYGFRKIKSDRVVKTNSVENRWWEFKHENFQKDRPELLAEIKRATHFNSTAENEDLQTIKAEMAFMKERMEKMSDTISELTSLVNHL 138
[Close]
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Match: A0A7S2UPP7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPP7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.100e-35
Identity = 78/173 (45.09%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:   61 TMRTQPRRRASEGSG--RSSKEEPIFLRKTFEMICSCDSDRTCDLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVKS-----RIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLRSEVTRLRSHIGDMGDKIGQLTSLVE 558
            T+    +++ S+GS   + S E PIFLRKT+ MI +CD      +A W ++G TFVVKDP++F+  IIP+FFKH+ FSSFVRQLNFYGFRK+KS        ++  ++ +W F+HD F R RP LL ++++A      +DKQ+V+ L+SEV  L+  I +M   I +LTS ++
Sbjct:   29 TVNMSKKKKGSKGSDAKKESPEAPIFLRKTYHMIDTCDPK----VAGWAEDGNTFVVKDPEIFASEIIPQFFKHNNFSSFVRQLNFYGFRKIKSDPIKLNTVTDEVEASYWRFRHDKFLRGRPDLLGEIKKANQ-NEALDKQDVDALKSEVNELKGRIANMSGDIDKLTSCLK 196
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT33_9PHAE8.180e-8542.61HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D8LTY4_ECTSI2.390e-7955.84Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
A0A6H5L567_9PHAE1.640e-5560.92HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
A0A836CRK9_9STRA2.160e-4651.61HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A835YK43_9STRA2.300e-4553.49HSF-type DNA-binding-domain-containing protein n=1... [more]
A0A6S8RFZ1_9STRA8.590e-3845.20Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1GQW1_CYCTE4.350e-3748.75Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
W7U925_9STRA2.760e-3644.57Winged helix-turn-helix transcription repressor n=... [more]
A0A7S2V607_9STRA3.840e-3644.37Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2UPP7_9STRA3.100e-3545.09Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:649965..659688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.7e-30
Seed eggNOG ortholog2850.Phatr45112
Preferred nameHSF4
KEGG koko:K09414,ko:K09415,ko:K09416,ko:K09417,ko:K09419
KEGG Pathwayko04212,ko05134,map04212,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000165,GO:0000228,GO:0000280,GO:0000302,GO:0000775,GO:0000776,GO:0000785,GO:0000790,GO:0000791,GO:0000792,GO:0000922,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001078,GO:0001101,GO:0001161,GO:0001162,GO:0001227,GO:0001228,GO:0001654,GO:0001701,GO:0001817,GO:0001818,GO:0001890,GO:0001892,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0002237,GO:0002376,GO:0002673,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003700,GO:0003712,GO:0003713,GO:0003714,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006468,GO:0006482,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006986,GO:0006996,GO:0007049,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007292,GO:0007346,GO:0007423,GO:0007565,GO:0007568,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0008214,GO:0008284,GO:0008285,GO:0008340,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009314,GO:0009408,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010212,GO:0010243,GO:0010259,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010656,GO:0010660,GO:0010662,GO:0010664,GO:0010665,GO:0010667,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016569,GO:0016570,GO:0016577,GO:0016604,GO:0016605,GO:0016607,GO:0017085,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031072,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031440,GO:0031442,GO:0031490,GO:0031620,GO:0031647,GO:0031650,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032270,GO:0032355,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032680,GO:0032720,GO:0032774,GO:0032870,GO:0032991,GO:0033169,GO:0033554,GO:0033574,GO:0033993,GO:0034599,GO:0034605,GO:0034614,GO:0034620,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035690,GO:0035770,GO:0035966,GO:0035967,GO:0036003,GO:0036211,GO:0040008,GO:0040014,GO:0040018,GO:0040024,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042509,GO:0042531,GO:0042542,GO:0042742,GO:0042802,GO:0042803,GO:0042981,GO:0043009,GO:0043010,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043388,GO:0043393,GO:0043412,GO:0043434,GO:0043497,GO:0043565,GO:0043618,GO:0043620,GO:0043621,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044706,GO:0045087,GO:0045120,GO:0045595,GO:0045597,GO:0045738,GO:0045787,GO:0045862,GO:0045892,GO:0045893,GO:0045927,GO:0045931,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046425,GO:0046427,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046688,GO:0046982,GO:0046983,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050727,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050821,GO:0050829,GO:0050832,GO:0050877,GO:0050896,GO:0050953,GO:0051052,GO:0051053,GO:0051054,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051879,GO:0052547,GO:0052548,GO:0060136,GO:0060255,GO:0060548,GO:0061408,GO:0061458,GO:0061770,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070076,GO:0070206,GO:0070207,GO:0070301,GO:0070887,GO:0070988,GO:0071214,GO:0071229,GO:0071230,GO:0071236,GO:0071241,GO:0071243,GO:0071248,GO:0071276,GO:0071280,GO:0071310,GO:0071375,GO:0071392,GO:0071396,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071495,GO:0071704,GO:0071840,GO:0072686,GO:0072737,GO:0072738,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090083,GO:0090084,GO:0090261,GO:0090304,GO:0097159,GO:0097165,GO:0097237,GO:0097327,GO:0097431,GO:0097659,GO:0097677,GO:0098542,GO:0098687,GO:0098847,GO:0104004,GO:0140013,GO:0140110,GO:1900034,GO:1900117,GO:1900119,GO:1900363,GO:1900365,GO:1901214,GO:1901215,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901652,GO:1901653,GO:1901654,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1902074,GO:1902075,GO:1902510,GO:1902512,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902749,GO:1902751,GO:1902806,GO:1902808,GO:1903046,GO:1903311,GO:1903313,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1903555,GO:1903556,GO:1903624,GO:1903626,GO:1903935,GO:1903936,GO:1904385,GO:1904526,GO:1904528,GO:1904892,GO:1904894,GO:1990776,GO:1990837,GO:1990841,GO:1990904,GO:2000112,GO:2000113,GO:2000116,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033,GO:2001056,GO:2001141
EggNOG free text desc.heat shock factor
EggNOG OGs2XCJ0@2836,COG5169@1,KOG0627@2759
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-12_003890.1
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons7
Model size3290
Cds size2145
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.5954335-UTR-D-herbacea_F_contig110:649964..6499971622927517.5954335-UTR-D-herbacea_F_contig110:649964..649997Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 649965..649997 +
1690790212.3004875-UTR-D-herbacea_F_contig110:649964..6499971690790212.3004875-UTR-D-herbacea_F_contig110:649964..649997Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 649965..649997 +
1622927517.725545-UTR-D-herbacea_F_contig110:658576..6596881622927517.725545-UTR-D-herbacea_F_contig110:658576..659688Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 658577..659688 +
1690790212.3708289-UTR-D-herbacea_F_contig110:658576..6596881690790212.3708289-UTR-D-herbacea_F_contig110:658576..659688Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 658577..659688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.6120665-CDS-D-herbacea_F_contig110:649997..6502381622927517.6120665-CDS-D-herbacea_F_contig110:649997..650238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 649998..650238 +
1690790212.3106441-CDS-D-herbacea_F_contig110:649997..6502381690790212.3106441-CDS-D-herbacea_F_contig110:649997..650238Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 649998..650238 +
1622927517.622725-CDS-D-herbacea_F_contig110:654914..6550211622927517.622725-CDS-D-herbacea_F_contig110:654914..655021Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 654915..655021 +
1690790212.3177762-CDS-D-herbacea_F_contig110:654914..6550211690790212.3177762-CDS-D-herbacea_F_contig110:654914..655021Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 654915..655021 +
1622927517.632704-CDS-D-herbacea_F_contig110:655807..6564291622927517.632704-CDS-D-herbacea_F_contig110:655807..656429Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 655808..656429 +
1690790212.324991-CDS-D-herbacea_F_contig110:655807..6564291690790212.324991-CDS-D-herbacea_F_contig110:655807..656429Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 655808..656429 +
1622927517.6421785-CDS-D-herbacea_F_contig110:656504..6565931622927517.6421785-CDS-D-herbacea_F_contig110:656504..656593Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656505..656593 +
1690790212.3321657-CDS-D-herbacea_F_contig110:656504..6565931690790212.3321657-CDS-D-herbacea_F_contig110:656504..656593Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656505..656593 +
1622927517.6535668-CDS-D-herbacea_F_contig110:656764..6569451622927517.6535668-CDS-D-herbacea_F_contig110:656764..656945Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656765..656945 +
1690790212.3418796-CDS-D-herbacea_F_contig110:656764..6569451690790212.3418796-CDS-D-herbacea_F_contig110:656764..656945Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656765..656945 +
1622927517.6668248-CDS-D-herbacea_F_contig110:656996..6574991622927517.6668248-CDS-D-herbacea_F_contig110:656996..657499Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656997..657499 +
1690790212.352636-CDS-D-herbacea_F_contig110:656996..6574991690790212.352636-CDS-D-herbacea_F_contig110:656996..657499Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 656997..657499 +
1622927517.6781619-CDS-D-herbacea_F_contig110:658174..6585761622927517.6781619-CDS-D-herbacea_F_contig110:658174..658576Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 658175..658576 +
1690790212.3608596-CDS-D-herbacea_F_contig110:658174..6585761690790212.3608596-CDS-D-herbacea_F_contig110:658174..658576Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 658175..658576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.914.1prot_D-herbacea_F_contig110.914.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 649998..658576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.914.1

>prot_D-herbacea_F_contig110.914.1 ID=prot_D-herbacea_F_contig110.914.1|Name=mRNA_D-herbacea_F_contig110.914.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=715bp
MHTSTCGDCTMRTQPRRRASEGSGRSSKEEPIFLRKTFEMICSCDSDRTC
DLARWTQNGETFVVKDPDVFSRVIIPKFFKHSKFSSFVRQLNFYGFRKVK
SRIASEGCDSKWWEFKHDLFHRDRPHLLSDMRRATHYGVTVDKQEVEHLR
SEVTRLRSHIGDMGDKIGQLTSLVEALAVEGNKPPASLATMTTRAAAGSS
SSSYRAELGEWKGMGQVDGGGGDGSFCGESGDAFREYGVEEGGEDSKFFP
PAVAVGGGGAAGVVYADTEPGTAGAAFLPSRLLPRKRKLVGLDGERIIIV
EENEGGRDEEAAAAEEKTAAAAACAVVKHEVVGLVKQEIVDDERPSEAVA
TAAAAAAAASISNPAQAPVPSPPQPLVVEGSGVPGGEFLQGFTDQFLSLE
SSPTSSYVMLADGVEAASGEKNVFGENGAVGGGDERRTGDVSDFRGGNSN
GSYAGAIVAEGDVGVGGVRANGSAALSASDDRGNSCCGGGGKSGLSTGRV
VGYPEEDESHIDICGHGVVPLTSGQDVVEPAASAVPVVVSAVVVDPLARS
DVAVAAPQVPKAEGAAMAMTRKGVIPPVPPHLKEGLSALMQHPTFLAALV
GQQGNNSNGNSTSTSTPVAMTKENKAPRPTSAPTDETALPTVDHMVIGDG
GEDPPTRCSGTGIARSDTSGTVTGTVSGGGGGGGGAGGGCFALRSQGHGG
FGKQLLPRSEGACA*
back to top

mRNA from alignment at D-herbacea_F_contig110:649965..659688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.914.1 ID=mRNA_D-herbacea_F_contig110.914.1|Name=mRNA_D-herbacea_F_contig110.914.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9724bp|location=Sequence derived from alignment at D-herbacea_F_contig110:649965..659688+ (Desmarestia herbacea DmunF female)
CATCCGGCAATCTACACCCAACGACGAGTTCTTATGCACACATCCACATG
CGGCGATTGCACCATGCGCACGCAGCCCCGCCGACGCGCTTCGGAAGGAA
GCGGGAGAAGCAGCAAGGAGGAGCCCATCTTTTTGCGCAAGACGTTCGAG
ATGATCTGCAGCTGTGACAGCGATCGAACGTGTGATCTGGCTCGTTGGAC
GCAAAACGGAGAAACGTTTGTGGTGAAAGACCCGGACGTCTTCTCGCGAG
TCATCATTCCAAAGTTCTTCAAACGTGAGCCGCTAGTGTGTGGTGCTCTC
TCCGCTATCCTATCGCTATACCGGGGTTTGTGTGCCGTGCCCACCAACGA
TAAAACGTTCGGCCACTAAAACACCGCAATCTTTCGGACAAACTACTATC
ATACTACTACTGACTGTTGTACGTATCATACTGACTGTTGTTTGGCTCTT
TGCGTGCTGTGTTCTGCTTCGTGACTTGTGCCCAGCAAGAGTGACATGTT
TCCCTTTTTTCTTACATCAGCACACTACAAAACGCGCAACATGCCTGTCA
TAGTGGCTCCGCCAACGGACACCACCAGGTCTCGCCATTTGCTTCCAAAT
GAAGCGGTTGACGCTTGACCGACTAGAGTAGCATATTTTGAATCTGTCTG
TTGGTTCTCACGTGCCGAAAGTCCGCAATCATTGCAGATTGCAGACAGCA
GCACAGTATTCTACAACAAACAGCACAGCACGATCCTGTGCGATATCACG
TTTAGTATGACATCACCCCAGTCAGTATATACCCGGTATATATCGTCAGT
CCAAGCCGTCGCATACAGCAGCAGTAGTAGTAGTGCCAATAAAGTTTTGC
GCGACGTACAACGCCACAACGCAACAACAAAATGCTACCAGTATTAATAG
ATTTATCTGGCTAGATCTTTCCCCTACGATAGCGATGGATGGCTGCATCT
TGGGAGCAATGCGCGAAGTGTCTCTACCAGTCCAAAAGAACGTGTACGCT
GTGGGCCCATTACAATCAAGTCATATACATCCTCGTGATGGTATTCAACG
GTCTGTCTCACTGGTGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAAC
TGTCATTTTTTTACCCGCAATTACGCTTGTGTCCTCACGCTTGTGTCCTC
TCGTGATTCTGTCTGTGGGTACCTCGTTGAATGAAGGGTAACGCTGGGGG
TACGCTGCGTCGCATTTTCGGCTGGGATTAACGTCGCTTGGTTGGCGATC
GGCTCGTCCTATCGTCCTATGACCTATGACATAGCATTCCACCGATCTTG
GCTCTTTTGAAACAGATGCGCCGTCGGACAAAAATCCGATCTTGTTTTGA
AATTCCGCTGTGTCCTTCCTTGTACGAGTATCTCAGATCTACGACAGTAG
TATGTACCTCGTGGATCTACTACCGTATCCATATCATCCCATATTGTCCG
TACTGACTGTTGTAGTGATCTGTTGAAGAACCTACAGTAGTAGTATTTAT
ACTATTACAGATATACATATTGTATCCGGTATGATGGTATGCTCCTTGCA
CCTGCTGTGACCACGGGTTCGAGGGATCGGACTAACGTGACGATAATAAT
AATAATAATAATAATAATAATAATAATAATAACAGAGGCCAATAACAAAT
AAATTTAGGCCCAAAACAGGGTGAAGAGGGGAAGCAAACATCCCCCCCCC
CGAAAGAATAAAAATCTAGCATCGTTGACAAGTCTACTGCCGCACCGTAT
GTATATGGTAGAACCGAACGAGATCCATGATTCACGCCGCGTCTGTCTGT
CTCGCGATTCACACGTCCATATAAGTGTTCTGGGCCTATTTAATAGGGGC
CCTCGTGATACTGCTGCTGTGCTGTCAGCTGTCAGTCAGAATTGGTGAGG
ATAACGTAGGCCGCATCAAATGCATCACTGATCAGCCGTGACGTTCATCC
AAACTGGTTCGGGGGCCAGGGGATAATCGTCAAGTCCTGAGTTATAACTT
ATTTGTAAGAAAAAATACATAACTACATAACTTATTTGAGGACCGATAGA
ATCCGCGCGACCGATGTATCACACAGTGAGTTGTGAGGTTCACGATTATC
TCGTGGCCCCCGAACCAGTTTGCAACGTCACGGCTGATTCTATCTATTTG
TAAGTAAAAATAATAATCGTCAAGCTTACTACTCGTACGTACTATTAATA
CTATCAATACGTGCTTCGTACCAGTTGCTTGCGTGATCCTTGCGCACTGA
AATATTATTATTTTTTCCTTAAAAAGACATGAGCGCGTGTGATGTTCCAA
ACTGGTTCGAGGGGCCAGGGGATAATCGTCAACTTCGCTGTGTGTGATAC
ATATTATCACGAGGGCCCCTAATAAATAGGCCCAAAACACTATACGTATT
GACGTGTGTATTGCGAGACAGACGCCGCCTGAATCCCGGATCTCGTCCCT
TTTTATCATGCGGTGACAGTAGCAATCAGTAGACCAATCAACGATGCCAC
ATTTTTAGTCTTCGGGGGTCGGGAAGGATACTTACGCTCCCTCTGCTCTT
CCTTGCTTTGGGTCTACTTGTGTATTACCAGGTATTATTTATTTATTAAT
CGTCACATTAGTCCGATACCTCGGGCCCGTGGTCACAGCAGGTGCAAGGA
GCATTCTATACCATCATACCCATATACATATCAAACAGCCCTTGAAAGTC
TGGAGATAGAAACAAAAAGTTATGGATGGGTTCCGGGTGATAGCCCAGAA
TCCCGACCCACAACACATCGCGATGCGTCACTGGTACTGCGATAACGCGA
GCCTCTGTAATATTATTTTTCATTATGTAGAGATGGAGCTAGAGTAAGAC
TAGGGCGAAGATAATAAGTGGGACGAAAAAAAAAAAAAAAAATTATGTAC
GAGTACAATATTTGTAGAATAACCTTTCTGACGGGGACCAAATGATGTGG
TCCCGTGGTTCCACAGGGTGCAGAGTATCATCATGTATTCCAGTCACTAT
TATACTATTATGCCCGGTACTACACACTGGTAATCGTAGTCTGGTAGGTA
TAACTACTACCACTACTACTACTAGTCTCTAGTCTGTAGCTATTCGTACA
GCAGCACAGAGTTGTAATGAGGCGAGGCTTATTTTTTTGCTGGCCTTTTT
TACCCGGGGTACCATGCAGTAGGTGGCCAGCAGTGCGCTATTTGCATGTT
ATCGTTGTGCGTGTAAACAGTAAAAGTCTCGTGGGACACTGTACTCGTAA
AGGTCGTTTCTAACGAGCAAAAAAAAAAGTCACATTCATCGCGACAAAAA
GTCCGGCTTCGTGACTTTTGGAAACTTTTTTTGCCAAAGGTCCTGTTTGA
AAGTCACCAATCGTGATTTTTTTTTTTAGGTTTTTTCAATTGGATTGAAA
ATCACGATTGTGGACTTTTTTTTTTTTAATGGTGTTTTTTTTTTTTAGTC
ATATTTTTTTTTGTTACAATTGTGGACTTTTTTTTGCCCGTTAGAAACGA
CCCTATAAGCAGTAACTAATACCCATGTAACTCCCCCAAATCAAAGGGAA
GAAGGCTCCAACCGCCAACTGATGTGACCGTGTGTGTGTGAACGTGTGAA
TCATCTTGCGTTTTTTTCTTCTTTATTTTTTTTTATTTTTTCTTCTTTTG
ACGGCGTCATTTTAATCGGATTTGGCCAACAAAGCGGCAACACACGTCCG
GTGACGGTTGCAGTGCAGTGCAGTCTTTTGCCTGCTGCCAGACCTGATTG
CCTGATGGGTAGGAAATGGGAATTGTACGGTAATACAATGTTATTTAACG
TTCTGTATACTGTACTCATTTAAATGGTACCAGTGTAAAAGTCAAAGCGG
TTTTGCGGGTAGATGGCCCCCAACCATATATGTACCGCTACCTGCTATAT
AAGCCGTTGACGGCTATACTACAACAGTACAATCGTTGCATACCGATTTA
TGATAGATGGTGTATAAATGAAATGACTCGATGTGAAGTTATTGTTTTTG
GCCTCCATTGCCCCCCCCCCCCGCTCACTATCCGGGGGGGCTTTTGGGCT
CGTGGTAGGCGCCGCTCGCGGGTGGCTCGCGCCGCCATTTCAATGGTAAA
TGGTGCGCTGACGTGCATCTTTTACAATTGAAATTATTAGACCCACCAGT
TCCATTCCCTACTGATCGGTGTTTGTTCGAAAAGGCGCTTCCGGTTGGCC
TGATTTGTGTGGACTGGAAGCCGGACTTGAATCTTGTTCCGCTGCAGTAT
GATACAACGGACTGTCGTAGTCGTGCAGTAGTACTACTCAATACTAGTGT
ATGTAGGTATTAGTCAAGTAATATAGTACATATATTAATGGTATGATGGT
ATGCACGACCTTTTAGTAAGGGTGACCACACACAAGTGTGGTATATATGA
CGGCGTTCCTGGTGATGTTGCTAATAATCTTGGATTCCATAAAACGGGCA
CAGTAGCCCCCCCCCCCCCCTTCCGCCAGCGCTCACGACACGGCGCGTCT
TCGCGATACAGACCGACCTTGTTTTTGGCGATTATCGCAAAATAACGTCC
CATTGTTGTACTTCGAGTATATTATTAATATCATGTTGTATAATATTGTA
CTGTTGTTCGTGCTGTTTCTCCGCACACGCAACACGAGTTTTTTCATTTT
TCGACTTTTGGTTCGTGTTATTTTAGTTAACTTTCGGTTTTCTTTGCGGC
GTGTGTTCGTAGCGGTGTCGTACTGTAGTAGTACACGCGTACACGCGGCG
TATAATAACGGCATAGTTTACACATGGCCGACATCACGGTCGCACGACAA
AAAAAAGAGACCCAACGCATCTATCGGTCGTTTTGTTTTTTAGCTCTTCT
CCAAAAACAGATAAAAGCTCTCTGCTGGGGGCTCTCGTGAGATTATATTT
TCGCGTTTCTCATTATTTTTATTTGTTTTTCGTCCGTACGGCCTGAACAG
ACAGCAAATTCAGCTCGTTCGTGAGGCAGCTGAACTTTTACGGGTTCCGC
AAGGTCAAGTCGAGAATCGCTTCTGAGGGCTGTGACAGCAAATGGTGGGA
GTTCAAGGTAACTCGTGTGGGGTGTTTTCGTCCCCCCCCTCCTCCACGGC
GGCACTGCCCTGATCCATCCGCTATTGCACTGTATTATTTTTAAAGAGGG
GTGTGTGTCGGCAGCAGGAAACGACATTATTTATATTGGCTATGAGCGCT
AGCCAATATACCAATATTTATCGCTATATTGGTGAGCAATCGGAACCAAT
TTATTGGCGAGCGAATCGAGCCGAATCGCCCCCCCCCCCCGCGGCCGGAG
GGGGGGGGTTGGGGGGGGCTCCCGGAAGCAAATTTTATGCCATTTGGCTT
CATTTTTTACCAAGAAAAAGTATGGTATTTTCTTTGTGGTGTACCAGCGT
GTGCGACGCACTCGAAGCGACCGGCATTGCTACTGTGTTCAGCCGGTCGC
TCGGTTGGTCGGTTGGTTGCCGACGTGGAAGTAGGTCTGTTGTATGATGA
TACTCCTGTTGTTGGGTCTCCCACCGTTGGGTACAGCAGATATAAAATAT
CCTGACACGCACTTGCGCCACTCTTAATGAAGTGCTTGTGAAATCGTAGT
ATCTAGAGATGGTACAGCTCCGACCGCGCTTCGATTCAGAACATAGCGCT
ACCTTTGCCCCCTTTGGAAACGAACTCGAGTATGACCCCCCCCCCCCCCC
CGCCCCGCCCCCCCACGCGTCTCATTTCCCATGGGGTGCGCGCTCAATGT
CACAAGAGGTAAGGTCTTGGAAAATTGATTAGCCCCCCTCCCACCGCCCC
TATCTCCGTGTGCCTCTGCGACCTTTTGCACCACCACCGAAAGCATGATC
TTTTTCACCGAGACAGGCCGCACCTTCTGTCGGACATGAGACGCGCGACG
CACTACGGAGTGACGGTGGACAAGCAAGAGGTGGAGCACCTTCGGTCCGA
GGTAACGCGCCTCCGCAGCCACATCGGGGACATGGGCGACAAGATCGGTC
AGCTGACGTCCCTCGTCGAGGCGCTCGCGGTCGAAGGTAATAAGCCTCCC
GCCTCTTTGGCGACGATGACCACCAGAGCGGCGGCGGGCTCGTCGTCGTC
GTCGTATCGCGCGGAGCTGGGCGAGTGGAAAGGAATGGGCCAAGTAGATG
GCGGCGGCGGCGACGGGTCTTTTTGCGGAGAGAGCGGCGACGCGTTTCGC
GAGTACGGAGTGGAAGAAGGGGGAGAGGACAGCAAGTTTTTCCCGCCTGC
AGTGGCGGTGGGCGGCGGTGGCGCTGCCGGCGTCGTCTACGCGGACACCG
AGCCCGGCACCGCCGGCGCGGCGTTCTTGCCCTCTCGGCTCTTGCCCCGG
AAGCGAAAGCTCGTGGGGCTCGACGGCGAGCGCATTATAATCGTGGAGGA
GAACGAAGGGGGTCGGGATGAAGAAGCGGCGGCAGCAGAAGAAAAAACAG
CAGCTGCTGCTGCTTGTGCTGCTTCTGCTACCGCTCCGTGGCCTCCAGGA
TTTACGGGCGCTGCGAACACCGTCGTAAAGCAGGAGACAGGCGCGGTGGT
CAAGCACGAGGTAGTAGGCTTGGTCAAGCAGGAAATCGTCGATGATGAGC
GTCCTTCCGAGGCGGTGGCGACGGCGGCCGTGCCGCGATCACGATGGCCC
CCCTCCGACGAACCGTGGGCTTGGGCAGGCTGTCGCCCGCCGCTCGGGAT
CGACCACGCGACGGCGCCATCCATTGGTAACGCGGAAACAACCGCCATCG
CATCGTCGTCGTCGGCAGCGGCTGTAATAGCGACGGCGACAGCGGCAGAG
GCAGCGGCGGCGGCGGCCTCCATTTCGAACCCAGCCCAGGCGCCGGTGCC
GTCTCCGCCGCAGCCTCTCGTCGTGGAAGGAAGCGGCGTCCCCGGCGGCG
AGTTTCTGCAGGGCTTCACCGACCAGTTCCTCTCCTTGGAGTCGTCGCCG
ACGTCGAGCTACGTAATGTTGGCCGATGGTGGTAGCGACGGCGGTGAAGG
AGGAGGAGGAACCGCGGTGGGCGAAGCGTTAGTCGAAGCAGCGTCAGGCG
AGAAGAATGTGTTCGGCGAAAACGGAGCTGTGGGTGGAGGCGACGAACGA
CGAACCGGCGACGTGTCGGACTTCAGGGGCGGCAACAGTAATGGAAGCTA
CGCGGGCGCTATCGTCGCCGAGGGCGACGTCGGCGTCGGCGGTGTAAGAG
CCAACGGAAGCGCCGCTCTTTCTGCGTCCGACGACAGAGGCAACAGCTGC
TGCGGCGGTGGCGGGAAGAGTGGTTTGAGCACCGGTCGCGTCGTCGGCTA
CCCGGAAGAGGACGAGAGCCACATCGACATCTGCGGGCATGGGGTTGTGC
CCCTGACCTCTGGGCAAGACGTGGTTGAGCCGGCGGCGTCGGCAGTGCCG
GTGGTTGTGTCGGCTGTAGTCGTGGACCCTCTTGCTCGAAGCGACGTCGC
GGTGGCGGCGCCGCAGGTGCCGAAGGCAGAAGGAGCTGCGATGGCGATGA
CGAGGAAGGGTGTGATCCCTCCGGTGCCGCCCCACGTGGAGGAGCTCCAA
GACAACCTAGAGTGTTTACCCCCGCACAGCAGAACAAAGGTATGTTCAAC
AAACGTTTTTTTGTATTTTGTGTGCTTTCGTGCTATCTTACATGCGCTCA
CATGATGTTCCGTGCCGCTCAAGTTTTTAATAGTTTGTCGTGTGTGCGTG
TGTTGCGAGAAAATTGCACTGGCGTTGATGACTGCGACTAGAATAGTTCG
ATTGGAAGTAATGGCGTGAACCCATGGTTGAGGAGTGTCCCGCATGAGTT
TTTCGACATAGGTAGGGATGTATTCTCGGGTAGTTTTTGAACGCCGATGA
AGATTTATATATGCCGCTCTGCCAGAGTCATCGCACGAGCCTGTTGATAT
AGAAATCCCAAGGGGAGCATCACAGGATCATCCCGCCGATGCTTGCCTCC
CCCCCCCCCGTTATACGAATCTCTTCCATATATTGCCTGGCCTGTCTGTA
AGATTATGGCCTTAACAGCGTTACAAGATTTTGCTCCGCCGGTGGGTGAA
ACATACCCGTCTGTGCCGTAAGAACCACCACTAGCGTAAGCTCGGCTTTT
CCTCGATCATTGTCGTGCTGCCCCTCCCACATTTCTCTTGTCTTGACTGC
CTGTCTCTCTGTATTTCTCTCCGTCTCTCCGTATCTTTTTTTACTGTTTG
TGCCGCCCAGCTTAAGGAGGGCCTCTCTGCGCTGATGCAACACCCAACGT
TCCTCGCGGCGCTGGTCGGTCAACAAGGGAACAACAGCAACGGCAACAGC
ACCAGCACCAGCACCCCTGTGGCCATGACAAAGGAGAACAAAGCTCCGCG
TCCGACGTCAGCCCCGACCGACGAAACGGCACTCCCGACCGTCGACCACA
TGGTGATAGGCGACGGGGGTGAAGATCCTCCAACGAGATGCTCTGGGACG
GGGATCGCTCGAAGCGATACATCCGGGACTGTCACCGGGACTGTCAGTGG
TGGAGGTGGTGGCGGGGGAGGGGCAGGAGGGGGGTGTTTCGCTTTACGTT
CGCAAGGGCATGGTGGGTTCGGGAAGCAGCTGTTGCCTAGGTCAGAAGGG
GCGTGTGCGTGAGCGTTTACTGGGGGCTCGCGAATTGGAGGAGTAGAGAG
AGCCCTCTTGTCTCTTGTTAGCGTGATTTTGGTGGTTGTTTTGAGAAGAG
TTGTTTTTTTTGTGCGTTGCGTTGCCTCGCGTTGCATTGCGTTCCGTTTC
GTTTCGTTTTCTTTTTTATTGTTTTATTACGTGGTATAATATTTTGGCTA
GATTTTTTCTAAGGGGACGACGGAAAAACGAGAGTGGCTTGTCGTCGTGT
CTCTTTTTTCTTTTTTGTTGTCTTATTTTTTATTTTATTTTGTCTTGGGT
GAGGAGGAGACCGGAAAGGTATCATAGTTACTTGGGCGTGCGTGGGCGCC
AAAGTTTCCTTCGTCTTTTGTTTGTCGTGGGTCTCGAACCACGAAAGTTA
CAAAAAGGTCGCGTTTTGTTTTTAGATTCATTATATATATATATTGTGTT
GTATTGTATCGCATCGTATTTTTTTTGTGTAGGAGTGTACTTACTCACTG
CTGCTGCTGTTGTTGTTGTGACCGGCACGTTCATACATAGTACTACTTGC
TTGTATGTTGTGGGGCCTCTCTTATGCTGTTGTTCGGAATGGAATGTCCC
ATAAGCTGGATCCTTGTGAAGCGGCGATGTTTTTTCCGTGGTGGTTGGGA
AAAAGGCGGTCTGCGGGGGGTAGACGGGGTGGTGGTGTTTTCCCCGTTGT
GCGCGGACAGTGAGTGACGAGGGGTTTCTTATAATTTTGGCGTTTTTTTT
TCTTCTTGTCTCGCCTATCGTATGTAGGCTTTTTTCTGCTTTGCACAGTA
TTAATATTGATGTTTTTGGTACAAGGGCGTCTGGTTACGGCTGGGTGAAT
GAAGTCCCTGCGCCCCGTTGTGTAGTTGTTGTTAGTACCATACTCTAATC
TTCCAGCGCCGATTCGCAAGCTTTGGCGTGTGGTCTGGTCCGTTTAGATG
CTAAGGAAGAGCGGCTATAATGACATAGTTTTCGGCGCAGTAGTAGTTAC
TAGTAGTAGTACTAGTTAGTAGTGTGATTTGCCGGAAGTATTAAATGAGC
GAATGTGATATCGGTGCAGCCAGCTGTGGACCTACGATGATGTGATTAGT
TTTTTTCTGGCGGAGCAGATTAGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig110:649965..659688+

>mRNA_D-herbacea_F_contig110.914.1 ID=mRNA_D-herbacea_F_contig110.914.1|Name=mRNA_D-herbacea_F_contig110.914.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=4290bp|location=Sequence derived from alignment at D-herbacea_F_contig110:649965..659688+ (Desmarestia herbacea DmunF female)
ATGCACACATCCACATGCGGCGATTGCACCATGCGCACGCAGCCCCGCCG
ACGCGCTTCGGAAGGAAGCGGGAGAAGCAGCAAGGAGGAGCCCATCTTTT
TGCGCAAGACGTTCGAGATGATCTGCAGCTGTGACAGCGATCGAACGTGT
GATCTGGCTCGTTGGACGCAAAACGGAGAAACGTTTGTGGTGAAAGACCC
GGACGTCTTCTCGCGAGTCATCATTCCAAAGTTCTTCAAACATGCACACA
TCCACATGCGGCGATTGCACCATGCGCACGCAGCCCCGCCGACGCGCTTC
GGAAGGAAGCGGGAGAAGCAGCAAGGAGGAGCCCATCTTTTTGCGCAAGA
CGTTCGAGATGATCTGCAGCTGTGACAGCGATCGAACGTGTGATCTGGCT
CGTTGGACGCAAAACGGAGAAACGTTTGTGGTGAAAGACCCGGACGTCTT
CTCGCGAGTCATCATTCCAAAGTTCTTCAAACACAGCAAATTCAGCTCGT
TCGTGAGGCAGCTGAACTTTTACGGGTTCCGCAAGGTCAAGTCGAGAATC
GCTTCTGAGGGCTGTGACAGCAAATGGTGGGAGTTCAAGACAGCAAATTC
AGCTCGTTCGTGAGGCAGCTGAACTTTTACGGGTTCCGCAAGGTCAAGTC
GAGAATCGCTTCTGAGGGCTGTGACAGCAAATGGTGGGAGTTCAAGCATG
ATCTTTTTCACCGAGACAGGCCGCACCTTCTGTCGGACATGAGACGCGCG
ACGCACTACGGAGTGACGGTGGACAAGCAAGAGGTGGAGCACCTTCGGTC
CGAGGTAACGCGCCTCCGCAGCCACATCGGGGACATGGGCGACAAGATCG
GTCAGCTGACGTCCCTCGTCGAGGCGCTCGCGGTCGAAGGTAATAAGCCT
CCCGCCTCTTTGGCGACGATGACCACCAGAGCGGCGGCGGGCTCGTCGTC
GTCGTCGTATCGCGCGGAGCTGGGCGAGTGGAAAGGAATGGGCCAAGTAG
ATGGCGGCGGCGGCGACGGGTCTTTTTGCGGAGAGAGCGGCGACGCGTTT
CGCGAGTACGGAGTGGAAGAAGGGGGAGAGGACAGCAAGTTTTTCCCGCC
TGCAGTGGCGGTGGGCGGCGGTGGCGCTGCCGGCGTCGTCTACGCGGACA
CCGAGCCCGGCACCGCCGGCGCGGCGTTCTTGCCCTCTCGGCTCTTGCCC
CGGAAGCGAAAGCTCGTGGGGCTCGACGGCGAGCGCATTATAATCGTGGA
GGAGAACGAAGGGGGTCGGGATGAAGAAGCGGCGGCAGCAGAAGAAAAAA
CAGCAGCTGCTGCTGCTTCATGATCTTTTTCACCGAGACAGGCCGCACCT
TCTGTCGGACATGAGACGCGCGACGCACTACGGAGTGACGGTGGACAAGC
AAGAGGTGGAGCACCTTCGGTCCGAGGTAACGCGCCTCCGCAGCCACATC
GGGGACATGGGCGACAAGATCGGTCAGCTGACGTCCCTCGTCGAGGCGCT
CGCGGTCGAAGGTAATAAGCCTCCCGCCTCTTTGGCGACGATGACCACCA
GAGCGGCGGCGGGCTCGTCGTCGTCGTCGTATCGCGCGGAGCTGGGCGAG
TGGAAAGGAATGGGCCAAGTAGATGGCGGCGGCGGCGACGGGTCTTTTTG
CGGAGAGAGCGGCGACGCGTTTCGCGAGTACGGAGTGGAAGAAGGGGGAG
AGGACAGCAAGTTTTTCCCGCCTGCAGTGGCGGTGGGCGGCGGTGGCGCT
GCCGGCGTCGTCTACGCGGACACCGAGCCCGGCACCGCCGGCGCGGCGTT
CTTGCCCTCTCGGCTCTTGCCCCGGAAGCGAAAGCTCGTGGGGCTCGACG
GCGAGCGCATTATAATCGTGGAGGAGAACGAAGGGGGTCGGGATGAAGAA
GCGGCGGCAGCAGAAGAAAAAACAGCAGCTGCTGCTGCTTGCGCGGTGGT
CAAGCACGAGGTAGTAGGCTTGGTCAAGCAGGAAATCGTCGATGATGAGC
GTCCTTCCGAGGCGGTGGCGACGGCGGCCGCGCGGTGGTCAAGCACGAGG
TAGTAGGCTTGGTCAAGCAGGAAATCGTCGATGATGAGCGTCCTTCCGAG
GCGGTGGCGACGGCGGCCGCAGCGGCGGCGGCGGCCTCCATTTCGAACCC
AGCCCAGGCGCCGGTGCCGTCTCCGCCGCAGCCTCTCGTCGTGGAAGGAA
GCGGCGTCCCCGGCGGCGAGTTTCTGCAGGGCTTCACCGACCAGTTCCTC
TCCTTGGAGTCGTCGCCGACGTCGAGCTACGTAATGTTGGCCGATGGTGG
CAGCGGCGGCGGCGGCCTCCATTTCGAACCCAGCCCAGGCGCCGGTGCCG
TCTCCGCCGCAGCCTCTCGTCGTGGAAGGAAGCGGCGTCCCCGGCGGCGA
GTTTCTGCAGGGCTTCACCGACCAGTTCCTCTCCTTGGAGTCGTCGCCGA
CGTCGAGCTACGTAATGTTGGCCGATGGTGTCGAAGCAGCGTCAGGCGAG
AAGAATGTGTTCGGCGAAAACGGAGCTGTGGGTGGAGGCGACGAACGACG
AACCGGCGACGTGTCGGACTTCAGGGGCGGCAACAGTAATGGAAGCTACG
CGGGCGCTATCGTCGCCGAGGGCGACGTCGGCGTCGGCGGTGTAAGAGCC
AACGGAAGCGCCGCTCTTTCTGCGTCCGACGACAGAGGCAACAGCTGCTG
CGGCGGTGGCGGGAAGAGTGGTTTGAGCACCGGTCGCGTCGTCGGCTACC
CGGAAGAGGACGAGAGCCACATCGACATCTGCGGGCATGGGGTTGTGCCC
CTGACCTCTGGGCAAGACGTGGTTGAGCCGGCGGCGTCGGCAGTGCCGGT
GGTTGTGTCGGCTGTAGTCGTGGACCCTCTTGCTCGAAGCGACGTCGCGG
TGGCGGCGCCGCAGGTGCCGAAGGCAGAAGGAGCTGCGATGGCGATGACG
AGGAAGGGTGTGATCCCTCCGGTGCCGCCCCACTCGAAGCAGCGTCAGGC
GAGAAGAATGTGTTCGGCGAAAACGGAGCTGTGGGTGGAGGCGACGAACG
ACGAACCGGCGACGTGTCGGACTTCAGGGGCGGCAACAGTAATGGAAGCT
ACGCGGGCGCTATCGTCGCCGAGGGCGACGTCGGCGTCGGCGGTGTAAGA
GCCAACGGAAGCGCCGCTCTTTCTGCGTCCGACGACAGAGGCAACAGCTG
CTGCGGCGGTGGCGGGAAGAGTGGTTTGAGCACCGGTCGCGTCGTCGGCT
ACCCGGAAGAGGACGAGAGCCACATCGACATCTGCGGGCATGGGGTTGTG
CCCCTGACCTCTGGGCAAGACGTGGTTGAGCCGGCGGCGTCGGCAGTGCC
GGTGGTTGTGTCGGCTGTAGTCGTGGACCCTCTTGCTCGAAGCGACGTCG
CGGTGGCGGCGCCGCAGGTGCCGAAGGCAGAAGGAGCTGCGATGGCGATG
ACGAGGAAGGGTGTGATCCCTCCGGTGCCGCCCCACCTTAAGGAGGGCCT
CTCTGCGCTGATGCAACACCCAACGTTCCTCGCGGCGCTGGTCGGTCAAC
AAGGGAACAACAGCAACGGCAACAGCACCAGCACCAGCACCCCTGTGGCC
ATGACAAAGGAGAACAAAGCTCCGCGTCCGACGTCAGCCCCGACCGACGA
AACGGCACTCCCGACCGTCGACCACATGGTGATAGGCGACGGGGGTGAAG
ATCCTCCAACGAGATGCTCTGGGACGGGGATCGCTCGAAGCGATACATCC
GGGACTGTCACCGGGACTGTCAGTGGTGGAGGTGGTGGCGGGGGAGGGGC
AGGAGGGGGGTGTTTCGCTTTACGTTCGCAAGGGCATGGTGGGTTCGGGA
AGCAGCTGTTGCCTAGGTCAGAAGGGGCGTGTGCGTGACTTAAGGAGGGC
CTCTCTGCGCTGATGCAACACCCAACGTTCCTCGCGGCGCTGGTCGGTCA
ACAAGGGAACAACAGCAACGGCAACAGCACCAGCACCAGCACCCCTGTGG
CCATGACAAAGGAGAACAAAGCTCCGCGTCCGACGTCAGCCCCGACCGAC
GAAACGGCACTCCCGACCGTCGACCACATGGTGATAGGCGACGGGGGTGA
AGATCCTCCAACGAGATGCTCTGGGACGGGGATCGCTCGAAGCGATACAT
CCGGGACTGTCACCGGGACTGTCAGTGGTGGAGGTGGTGGCGGGGGAGGG
GCAGGAGGGGGGTGTTTCGCTTTACGTTCGCAAGGGCATGGTGGGTTCGG
GAAGCAGCTGTTGCCTAGGTCAGAAGGGGCGTGTGCGTGA
back to top