mRNA_D-herbacea_F_contig110.905.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.905.1
Unique NamemRNA_D-herbacea_F_contig110.905.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig110.905.1 vs. uniprot
Match: A0A6H5JSB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB0_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.920e-7
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 3 
Query:  270 GRRSGALGFRPRHD-RGGIHFIFPLVIGVASGFYIFNEPLKQAAIEAKAREAREK---GGG 440
            GR  G  GFRPR+     +H     V+GV +G+YIFNEPLK A  E KA+EA E+   GGG
Sbjct:    3 GRSRGFRGFRPRNSTHQALHVATLTVVGVVTGYYIFNEPLKTAVAEVKAKEAGERAAAGGG 63
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSB0_9PHAE9.920e-750.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:468466..469411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_003850.1
Exons2
Model size564
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.905.1prot_D-herbacea_F_contig110.905.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 468714..469398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.888913-UTR-D-herbacea_F_contig110:468465..4687131622927514.888913-UTR-D-herbacea_F_contig110:468465..468713Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 468466..468713 +
1690790210.799246-UTR-D-herbacea_F_contig110:468465..4687131690790210.799246-UTR-D-herbacea_F_contig110:468465..468713Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 468466..468713 +
1622927514.9203267-UTR-D-herbacea_F_contig110:469398..4694111622927514.9203267-UTR-D-herbacea_F_contig110:469398..469411Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 469399..469411 +
1690790210.8229353-UTR-D-herbacea_F_contig110:469398..4694111690790210.8229353-UTR-D-herbacea_F_contig110:469398..469411Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 469399..469411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8982913-CDS-D-herbacea_F_contig110:468713..4688251622927514.8982913-CDS-D-herbacea_F_contig110:468713..468825Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 468714..468825 +
1690790210.8078787-CDS-D-herbacea_F_contig110:468713..4688251690790210.8078787-CDS-D-herbacea_F_contig110:468713..468825Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 468714..468825 +
1622927514.9083645-CDS-D-herbacea_F_contig110:469207..4693981622927514.9083645-CDS-D-herbacea_F_contig110:469207..469398Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 469208..469398 +
1690790210.815506-CDS-D-herbacea_F_contig110:469207..4693981690790210.815506-CDS-D-herbacea_F_contig110:469207..469398Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 469208..469398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.905.1

>prot_D-herbacea_F_contig110.905.1 ID=prot_D-herbacea_F_contig110.905.1|Name=mRNA_D-herbacea_F_contig110.905.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=101bp
MFRNMFGGRRSGALGFRPRHDRGGIHFIFPLVIGVASGFYIFNEPLKQAA
IEAKAREAREKGGGTEGGGSGASNSSSTCNDGRGKPQAGSGDAERRSSGK
*
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mRNA from alignment at D-herbacea_F_contig110:468466..469411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.905.1 ID=mRNA_D-herbacea_F_contig110.905.1|Name=mRNA_D-herbacea_F_contig110.905.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=946bp|location=Sequence derived from alignment at D-herbacea_F_contig110:468466..469411+ (Desmarestia herbacea DmunF female)
GCTGAAGAAGCCCCAGGATGGTCTTGCACAAATTGTGCCCTCCTGCTCTC
ATCGTCAACACGGTTCGAGAGATCGTCGCCAGAATTCACACGAGAGGAGT
GGGCAGGTCACGGGTACTGGTTTTGTGTGACGCAATTGTCTTGTAGACAA
ACGCCACAACTGAACAAGTACAGTTACTACAACAACAACAACAACAACAA
CAACAACAGCACAGACAACAGTCAGTAGTAGTAGTTGTTGCAGTCGAAAT
GTTCCGCAACATGTTTGGCGGCCGTCGTAGCGGTGCGTTAGGCTTCCGTC
CTCGACATGACCGTGGGGGTATACACTTCATCTTCCCTCTTGTCATCGGT
GTCGCGTCAGGTGAGTACGCGCCGTTCATCAAGAGTGGTGGCGTTCCCGA
ATACTGTCGACAGCATCCCTGTCATGCCACATCGTACAGACTAAAGCTCT
ACGCATCATAGAGCTCAGCTGAGCTTTACTTCGAAGTAGACTACGAGCCC
ACGAGCACTCTCTGTAGTACTTCTTTGTTTACGATTACGACAACAACAGT
AGTATTAATAGTAGAGCTCTATGATAGTAGTGTAGCAATATACAAAGTAG
AGTTCAGAAGGAAGTGCGCGCAAAACCTTCACTCGGTTCCCTATAACCGT
GCTCTCGTTTCTCTCGCGCTCTCGCACTCTGCATGCGCTCCGCTGTCTAA
ACTGCTGGATCATATCCTGTTCCGTGACTTCGTCCCCGTCAGGATTCTAC
ATCTTCAACGAGCCCTTGAAGCAGGCAGCAATCGAAGCGAAAGCCAGGGA
AGCAAGGGAAAAGGGTGGAGGGACGGAAGGGGGGGGTAGTGGTGCCAGCA
ATAGTAGCAGTACTTGTAATGATGGACGAGGAAAGCCCCAAGCGGGAAGC
GGCGATGCTGAACGACGAAGTAGCGGAAAATAAAAATTATCACGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig110:468466..469411+

>mRNA_D-herbacea_F_contig110.905.1 ID=mRNA_D-herbacea_F_contig110.905.1|Name=mRNA_D-herbacea_F_contig110.905.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_F_contig110:468466..469411+ (Desmarestia herbacea DmunF female)
ATGTTCCGCAACATGTTTGGCGGCCGTCGTAGCGGTGCGTTAGGCTTCCG
TCCTCGACATGACCGTGGGGGTATACACTTCATCTTCCCTCTTGTCATCG
GTGTCGCGTCAGATGTTCCGCAACATGTTTGGCGGCCGTCGTAGCGGTGC
GTTAGGCTTCCGTCCTCGACATGACCGTGGGGGTATACACTTCATCTTCC
CTCTTGTCATCGGTGTCGCGTCAGGATTCTACATCTTCAACGAGCCCTTG
AAGCAGGCAGCAATCGAAGCGAAAGCCAGGGAAGCAAGGGAAAAGGGTGG
AGGGACGGAAGGGGGGGGTAGTGGTGCCAGCAATAGTAGCAGTACTTGTA
ATGATGGACGAGGAAAGCCCCAAGCGGGAAGCGGCGATGCTGAACGACGA
AGTAGCGGAAAATAAGATTCTACATCTTCAACGAGCCCTTGAAGCAGGCA
GCAATCGAAGCGAAAGCCAGGGAAGCAAGGGAAAAGGGTGGAGGGACGGA
AGGGGGGGGTAGTGGTGCCAGCAATAGTAGCAGTACTTGTAATGATGGAC
GAGGAAAGCCCCAAGCGGGAAGCGGCGATGCTGAACGACGAAGTAGCGGA
AAATAA
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