mRNA_D-herbacea_F_contig110.900.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig110.900.1
Unique NamemRNA_D-herbacea_F_contig110.900.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig110.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig110contigD-herbacea_F_contig110:361943..363143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size700
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig110.900.1prot_D-herbacea_F_contig110.900.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig110 362030..362974 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.798983-UTR-D-herbacea_F_contig110:361942..3620291622927514.798983-UTR-D-herbacea_F_contig110:361942..362029Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 361943..362029 +
1690790210.7557025-UTR-D-herbacea_F_contig110:361942..3620291690790210.7557025-UTR-D-herbacea_F_contig110:361942..362029Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 361943..362029 +
1622927514.8584716-UTR-D-herbacea_F_contig110:362974..3631431622927514.8584716-UTR-D-herbacea_F_contig110:362974..363143Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 362975..363143 +
1690790210.7875993-UTR-D-herbacea_F_contig110:362974..3631431690790210.7875993-UTR-D-herbacea_F_contig110:362974..363143Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig110 362975..363143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.8095622-CDS-D-herbacea_F_contig110:362029..3623931622927514.8095622-CDS-D-herbacea_F_contig110:362029..362393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 362030..362393 +
1690790210.7685397-CDS-D-herbacea_F_contig110:362029..3623931690790210.7685397-CDS-D-herbacea_F_contig110:362029..362393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 362030..362393 +
1622927514.8194644-CDS-D-herbacea_F_contig110:362894..3629741622927514.8194644-CDS-D-herbacea_F_contig110:362894..362974Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 362895..362974 +
1690790210.7779598-CDS-D-herbacea_F_contig110:362894..3629741690790210.7779598-CDS-D-herbacea_F_contig110:362894..362974Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig110 362895..362974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig110.900.1

>prot_D-herbacea_F_contig110.900.1 ID=prot_D-herbacea_F_contig110.900.1|Name=mRNA_D-herbacea_F_contig110.900.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=148bp
MEWGGFVTPEDLPQLHSCYVARHPSGAGRRAVEEEDEEGETSITLFQPVD
VPSGRDLNVTPWCCGSGKCVVGKRGEPRLLCEEQRSKRWMCHPCRIDKTR
GNRCSNFVRCVSQWWGRTGVSDAKIIRRQSVKRRPSRCLAYDDQVPA*
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mRNA from alignment at D-herbacea_F_contig110:361943..363143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig110.900.1 ID=mRNA_D-herbacea_F_contig110.900.1|Name=mRNA_D-herbacea_F_contig110.900.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1201bp|location=Sequence derived from alignment at D-herbacea_F_contig110:361943..363143+ (Desmarestia herbacea DmunF female)
ACTGCAGCGGGTGCTGGCGTCAACTGTCGCGTATCACAACCCCGAGCAAC
GGGGGCGAGGATCTCCGTTTGGGTGCCATCGACCGCGATGGAATGGGGTG
GTTTCGTCACCCCCGAAGATTTACCCCAGCTACACAGCTGCTACGTGGCG
AGACACCCTAGCGGAGCAGGGAGGAGGGCGGTTGAGGAAGAGGATGAGGA
GGGTGAAACAAGCATTACTTTGTTTCAACCTGTGGATGTTCCTTCCGGAA
GAGACCTCAATGTCACCCCCTGGTGCTGTGGCAGCGGCAAGTGTGTGGTG
GGCAAGCGAGGGGAGCCTCGGTTGCTTTGCGAGGAGCAGCGTTCAAAACG
GTGGATGTGCCATCCATGCCGCATTGATAAAACGCGCGGCAACAGGTGTT
CGAATTTTGTGCGCTGTGTGAGCCAATGGTGGGGGCGTACTGGCGTCTCA
GGTAAGCTCCTGGAGTATCGGGGGGTTCTTCGCGCTTTGGCGTTCGTTTT
CGCAACTGCAATACCATTTCTGTGTAGTAGGAAACGCATGTTGGCTCCCA
AGCATTAGGCCAATGATATATTGATAGTGAAGGAACGGAAGTGTTAAAAT
TTGTGCACGCCACGCAGCGAGAGTGTTTTGCTTAGCTTTGACAGCACAGT
TGAAAACCTTGTTTCCGCCGCCAAAACAATGTCCACTTTATTTATCCTTA
CACACACAAAATATTTTGGGGCACGTACTTTGGTAGTCAAAAAAATATCT
ATGCGATGGATATCGACTTGTGGACAAAATTAAACATGGTATCGAATTCC
TGGGTTATAAGAAATCTGCTGTCGTATGTACGTGAATTTCATGAAACTTG
CTGCGTTGAAAATACACATGTTTTTTTTCCAACTCAGATGTTGCAACCCC
GACATACTCTCTCTCTATCTTCGCCCCGCCCCTTTAACATTTTCCTGTAC
AGATGCAAAAATAATAAGAAGACAGTCGGTAAAAAGGCGGCCGAGTCGGT
GTCTGGCGTACGACGACCAAGTGCCAGCGTAAATACAGCCTACCGCGAAA
CCCCTCAGAATGCCTTCAGATTCCCGCCGAATGGTGCTGCTCAGGCGTTC
TTGGTTTTGACTGCGACGAGCAAGGAACGCGTGGTCGTTACACTTTGAGG
AGACGGGAGTAGGCTTCGCCCACGCTGTTTAGGCTCGTGTGTATGCTCTT
T
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Coding sequence (CDS) from alignment at D-herbacea_F_contig110:361943..363143+

>mRNA_D-herbacea_F_contig110.900.1 ID=mRNA_D-herbacea_F_contig110.900.1|Name=mRNA_D-herbacea_F_contig110.900.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=888bp|location=Sequence derived from alignment at D-herbacea_F_contig110:361943..363143+ (Desmarestia herbacea DmunF female)
ATGGAATGGGGTGGTTTCGTCACCCCCGAAGATTTACCCCAGCTACACAG
CTGCTACGTGGCGAGACACCCTAGCGGAGCAGGGAGGAGGGCGGTTGAGG
AAGAGGATGAGGAGGGTGAAACAAGCATTACTTTGTTTCAACCTGTGGAT
GTTCCTTCCGGAAGAGACCTCAATGTCACCCCCTGGTGCTGTGGCAGCGG
CAAGTGTGTGGTGGGCAAGCGAGGGGAGCCTCGGTTGCTTTGCGAGGAGC
AGCGTTCAAAACGGTGGATGTGCCATCCATGCCGCATTGATAAAACGCGC
GGCAACAGGTGTTCGAATTTTGTGCGCTGTGTGAGCCAATGGTGGGGGCG
TACTGGCGTCTCAGATGGAATGGGGTGGTTTCGTCACCCCCGAAGATTTA
CCCCAGCTACACAGCTGCTACGTGGCGAGACACCCTAGCGGAGCAGGGAG
GAGGGCGGTTGAGGAAGAGGATGAGGAGGGTGAAACAAGCATTACTTTGT
TTCAACCTGTGGATGTTCCTTCCGGAAGAGACCTCAATGTCACCCCCTGG
TGCTGTGGCAGCGGCAAGTGTGTGGTGGGCAAGCGAGGGGAGCCTCGGTT
GCTTTGCGAGGAGCAGCGTTCAAAACGGTGGATGTGCCATCCATGCCGCA
TTGATAAAACGCGCGGCAACAGGTGTTCGAATTTTGTGCGCTGTGTGAGC
CAATGGTGGGGGCGTACTGGCGTCTCAGATGCAAAAATAATAAGAAGACA
GTCGGTAAAAAGGCGGCCGAGTCGGTGTCTGGCGTACGACGACCAAGTGC
CAGCGTAAATGCAAAAATAATAAGAAGACAGTCGGTAAAAAGGCGGCCGA
GTCGGTGTCTGGCGTACGACGACCAAGTGCCAGCGTAA
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