mRNA_D-herbacea_F_contig11.887.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig11.887.1 vs. uniprot
Match: A0A6H5JGV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV5_9PHAE) HSP 1 Score: 441 bits (1134), Expect = 1.030e-139 Identity = 282/630 (44.76%), Postives = 367/630 (58.25%), Query Frame = 1
Query: 250 WHQ---SGSSRRSGRN-FQQVVPLPWLAVACFSAVDLVSNAYVVEMEDFRRLMQRCNFHIASAAAGDVADLSPIYDLLDWVYDSVDATGPTALPKLLDAGVIDIVLRGAQSPNANMSILCHEMLNVLSSNEHVATMMAREPALRAAVVGEITRQLSGWSSADSG--DATVKLASDQAHDSTLSGNGDEASYVPPPVAVPVGTIVLDPFYAALCLRTLGNVMRASRA-------RGLSSDPTADGVNTSLNHGWGLAL-----------ELPWPVRLLYGGSDY--GKGRGEGGAEETVE-------------WPLEQKTVGHIAELMLCVSARGVETRRVVRGSGDAEMEAAAQLEAQHALHDLESAAASVLKEISNNPQLVELLMRRRHLIALVTLSWNGHSVKSEDWAAEAALNVCAAYRRQHGIPESFGPKMELQDVLNILRNWTETANKEAEAGVPGVDLGASEDDVNFMLQASRYSIPPLALSGPLLTVTASTVVGL-VGVAWGAVRRWVAWRRAGETFAAVTRLALPRAVLWAGLRAGLGATLLTATHGPFGFRSQMRYRTLDATDGSRGTLAMSGAREAVDLGYLYVILRLCPYSLLPAFVLNAMLR-----GGPVGADAWKA 2004
W Q SG R + R F+ +PLPWLA+ F AV+ AY VE E L+QRCNFHIA+A G+ +L+ + +LLD V+ SV A GPTALPKLLDAGVI I LRGA+SPN +++++C+ +L VLS N HVA M+R+PA+RA ++GE+ RQ+ GW+ A SG D Q L+ G+ A+ P P TIV+DP + L L TL NVMRASR R + +P A G+N G G++ E+PWP R LYG ++Y G GG E + WPL++K V IAELML ++ V RG DAE+ LE+AAAS L EIS++P+LV LL+RRR L LV +S + S+ + ++EA LN+C AYRR HG+PE+ PK ++++ W + A P DL SE D F+ QA R ++PPL S L+ S VG+ +G WGA RRW+AWRRAGETF+ ++ +LP +L AGLRAGLGAT L ATHGP GFR Q LDAT GSRGTLAMS ARE +L YLY ILRLCPYSLLP+ V++A++ GG V D W A
Sbjct: 79 WSQKSTSGFLRSTWRGRFRDQIPLPWLALGLFQAVEFGLAAYEVEAEKVDELVQRCNFHIATATIGEAVNLTSLLELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVAVVCYRILTVLSQNRHVARRMSRDPAIRAVLIGELRRQVKGWNHAGSGADDDHEAEGEKQQRMGGLADGGEGATAAARP---PPATIVVDPIHLTLTLETLSNVMRASRRDINSSKRRSTAEEPGAAGLNRRFGAG-GVSGGRTAAGEDEEDEVPWPFRFLYGENNYEGAAGYAYGGGNEDDDTIIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGE-DAELGEV-----------LEAAAASSLLEISHHPELVGLLLRRRPLAGLVAVSQD--SMMAAQTSSEATLNICNAYRRCHGLPEASEPKASYEEIIT----WVNKTLAQEWAESPSGDLDTSEADQAFVRQAERSTLPPLPYSSVLINEIMSAGVGMALGFPWGAARRWIAWRRAGETFSVLSTCSLPWVLLRAGLRAGLGATALVATHGPAGFRPQASSWILDATSGSRGTLAMSAARELSELAYLYAILRLCPYSLLPSLVVSAVVGNDHRYGGVV--DDWGA 684
BLAST of mRNA_D-herbacea_F_contig11.887.1 vs. uniprot
Match: D7G608_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G608_ECTSI) HSP 1 Score: 331 bits (848), Expect = 2.080e-100 Identity = 215/482 (44.61%), Postives = 278/482 (57.68%), Query Frame = 1
Query: 646 MAREPALRAAVVGEITRQLSGWSSADSG---DATVKLASDQAHDSTLSGN-GDEASYVPPPVAVPVGTIVLDPFYAALCLRTLGNVMRASRA-------RGLSSDPTADGVNTSLNHGWGLAL-----------ELPWPVRLLYGGSDYGKGRG---EGGAEE------------TVEWPLEQKTVGHIAELMLCVSARGVETRRVVRGSGDAEMEAAAQLEAQHALHDLESAAASVLKEISNNPQLVELLMRRRHLIALVTLSWNGHSVKSEDWAAEAALNVCAAYRRQHGIPESFGPKMELQDVLNILRNWTETANKEAEAGVPGVDLGASEDDVNFMLQASRYSIPPLALSGPLLTVTASTVVGL-VGVAWGAVRRWVAWRRAGETFAAVTRLALPRAVLWAGLRAGLGATLLTATHGPFGFRSQMRYRTLDATDGSRGTLAMSGAREAVDLGYLYVILRLCPYSLLPAFVLNAMLRGG 1977
M+R+P +RA +VGE+ RQ+ GW+ A SG D + Q D G G A+ PPP TIV+DP + L L TL NVMRASR R + +P A G+N G G E+PWP R LYG ++Y G +GG E+ + WPL++K V IAELML ++ V RG DAE+ LE+AAAS L+EIS++ +LV LL+RRR L+ LV +S + S+ + ++EA LN+C AYRR HG+PE+ PK +V+ W + AG P DL SE D F+ QA R ++PP S L+ + ST VG+ +GV WGA RRW+AWRRAGETF+A++RL+LPRA+L AGLRAGLG T L ATHGP GFR Q R LDAT GSRGTLAMS ARE +L YLY ILRLCPYSLLP+ V++A++ G
Sbjct: 1 MSRDPVIRAVLVGELRRQVKGWNHAGSGADDDHEAEGEKQQRRDGLADGGEGATAAARPPPA-----TIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPEAAGLNWRFGAGVGSGGRTAVAGEDEEDEVPWPFRFLYGENNYEGAAGYAHDGGNEDDDTITPSVGGVVSGPWPLDRKLVADIAELMLSAASARDSEGAVARGE-DAELGEV-----------LEAAAASSLREISHHSELVGLLLRRRPLVGLVAVSQD--SMMAAQASSEATLNICNAYRRCHGLPEASEPKASYDEVIT----WVNKTLAQEWAGSPSGDLDTSEADQAFVRQAERSTLPPSPYSSVLINMQMSTGVGMALGVPWGAARRWIAWRRAGETFSALSRLSLPRALLLAGLRAGLGTTALVATHGPAGFRPQARPWILDATSGSRGTLAMSAAREVSELAYLYAILRLCPYSLLPSLVVSAVVWNG 459
BLAST of mRNA_D-herbacea_F_contig11.887.1 vs. uniprot
Match: D7G609_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G609_ECTSI) HSP 1 Score: 120 bits (301), Expect = 5.890e-27 Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 256 QSGSSRRSGRNFQQVVPLPWLAVACFSAVDLVSNAYVVEMEDFRRLMQRCNFHIASAAAGDVADLSPIYDLLDWVYDSVDATGPTALPKLLDAGVIDIVLRGAQSPNANMSILC 597
++GS+R S F+ VPLPWLA+ F AV+ AY VE E L+QRCNFHIA+A G+ +L+ + +LLD V+ SV A GPTALPKLLDAGVI I LRGA+SPN ++S C
Sbjct: 122 RTGSTRSS--RFRDQVPLPWLALVLFQAVEFGLAAYEVETEKLDELVQRCNFHIATATVGEAVNLTSLQELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVSKGC 233 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig11.887.1 >prot_D-herbacea_F_contig11.887.1 ID=prot_D-herbacea_F_contig11.887.1|Name=mRNA_D-herbacea_F_contig11.887.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=658bp MWRQARHRTLLSTPSRVWKNVPRQRLLKNTSISATPANNTFSTAPQYVRRback to top mRNA from alignment at D-herbacea_F_contig11:1499520..1508675- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig11.887.1 ID=mRNA_D-herbacea_F_contig11.887.1|Name=mRNA_D-herbacea_F_contig11.887.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=9156bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1499520..1508675- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1499520..1508675- >mRNA_D-herbacea_F_contig11.887.1 ID=mRNA_D-herbacea_F_contig11.887.1|Name=mRNA_D-herbacea_F_contig11.887.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3948bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1499520..1508675- (Desmarestia herbacea DmunF female)back to top |