mRNA_D-herbacea_F_contig11.884.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.884.1
Unique NamemRNA_D-herbacea_F_contig11.884.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1486138..1487035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size454
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927497.4552743-CDS-D-herbacea_F_contig11:1486138..14863931622927497.4552743-CDS-D-herbacea_F_contig11:1486138..1486393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1486139..1486393 -
1690790201.020085-CDS-D-herbacea_F_contig11:1486138..14863931690790201.020085-CDS-D-herbacea_F_contig11:1486138..1486393Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1486139..1486393 -
1622927497.4727736-CDS-D-herbacea_F_contig11:1486837..14870351622927497.4727736-CDS-D-herbacea_F_contig11:1486837..1487035Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1486838..1487035 -
1690790201.0337772-CDS-D-herbacea_F_contig11:1486837..14870351690790201.0337772-CDS-D-herbacea_F_contig11:1486837..1487035Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1486838..1487035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.884.1prot_D-herbacea_F_contig11.884.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1486139..1487035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.884.1

>prot_D-herbacea_F_contig11.884.1 ID=prot_D-herbacea_F_contig11.884.1|Name=mRNA_D-herbacea_F_contig11.884.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=151bp
LAWDDFPRESSEYNAHAARSSHPRFEGLREQSSSTWTPAETHSGRQGSRW
GVFSSGKSDSSLKEQRVDPRFVLSLPQEPSTSKRRANPAPKRGTKRGLPA
TTTNNAHGGSTAAEKRACRTLRNPEEESYATMQSAPSTSVGGLSSKARRC
E
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mRNA from alignment at D-herbacea_F_contig11:1486138..1487035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.884.1 ID=mRNA_D-herbacea_F_contig11.884.1|Name=mRNA_D-herbacea_F_contig11.884.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=898bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1486138..1487035- (Desmarestia herbacea DmunF female)
CTTGCGTGGGATGACTTTCCGCGAGAGTCGTCTGAGTACAACGCACACGC
CGCTAGGAGTAGCCATCCCCGGTTTGAAGGGCTCCGTGAGCAGTCGTCAT
CGACATGGACGCCAGCTGAGACACATTCCGGGAGGCAGGGTAGTCGATGG
GGCGTATTCTCGTCTGGGAAGTCTGACAGCAGTCTGAAGGAGCAACGGGT
AAGGGAGCTATGAACTCGATCGCGAGATAGGCATGAATCCTTTCAATTCG
TTTTTAGTTCGTTCCGAAGAAAAAGTGCGTGAGTCAAGGCCTCGGGGGTG
CGAGACAAGAAACGTGCGGACTCGAAATAACTTAAAAAACACCAGACAAT
AAATAATCTGATGTGAACATCAGACAAAAAATGACTTGAAAAATGCCAGA
CATGACTTGAAAAATTTTAAGACAAGAAATTACTTGAAAAACGCCTGAGA
AAACAATGATTCTCGGTCACGGAGACCCCTGTTGACACAGGAAATACGTG
CATGTATGTATGTGGTGTATGTAGAACTATAATCTTTTTCGCCTCAAGAA
GTAGTAGTAGTTGTAGGGCAGCGGAATGGTACTGGCGACCCATTCGTTTC
TTTGCCCCTACCTCCTCATAACATACCCGTAATGACGTACAGGTAGACCC
GCGCTTCGTGCTGAGCCTTCCTCAGGAACCAAGCACTTCTAAAAGACGCG
CCAATCCCGCCCCCAAGAGAGGCACGAAACGAGGCCTTCCGGCGACCACA
ACAAACAACGCACACGGTGGTAGCACCGCGGCAGAGAAGAGGGCATGCAG
GACTCTTCGCAACCCAGAAGAAGAATCGTACGCAACGATGCAAAGCGCCC
CCTCAACAAGTGTCGGAGGGTTATCATCAAAGGCACGGCGTTGTGAAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1486138..1487035-

>mRNA_D-herbacea_F_contig11.884.1 ID=mRNA_D-herbacea_F_contig11.884.1|Name=mRNA_D-herbacea_F_contig11.884.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=906bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1486138..1487035- (Desmarestia herbacea DmunF female)
CTTGCGTGGGATGACTTTCCGCGAGAGTCGTCTGAGTACAACGCACACGC
CGCTAGGAGTAGCCATCCCCGGTTTGAAGGGCTCCGTGAGCAGTCGTCAT
CGACATGGACGCCAGCTGAGACACATTCCGGGAGGCAGGGTAGTCGATGG
GGCGTATTCTCGTCTGGGAAGTCTGACAGCAGTCTGAAGGAGCAACGGCT
TGCGTGGGATGACTTTCCGCGAGAGTCGTCTGAGTACAACGCACACGCCG
CTAGGAGTAGCCATCCCCGGTTTGAAGGGCTCCGTGAGCAGTCGTCATCG
ACATGGACGCCAGCTGAGACACATTCCGGGAGGCAGGGTAGTCGATGGGG
CGTATTCTCGTCTGGGAAGTCTGACAGCAGTCTGAAGGAGCAACGGGTAG
ACCCGCGCTTCGTGCTGAGCCTTCCTCAGGAACCAAGCACTTCTAAAAGA
CGCGCCAATCCCGCCCCCAAGAGAGGCACGAAACGAGGCCTTCCGGCGAC
CACAACAAACAACGCACACGGTGGTAGCACCGCGGCAGAGAAGAGGGCAT
GCAGGACTCTTCGCAACCCAGAAGAAGAATCGTACGCAACGATGCAAAGC
GCCCCCTCAACAAGTGTCGGAGGGTTATCATCAAAGGCACGGCGTTGTGA
AGTAGACCCGCGCTTCGTGCTGAGCCTTCCTCAGGAACCAAGCACTTCTA
AAAGACGCGCCAATCCCGCCCCCAAGAGAGGCACGAAACGAGGCCTTCCG
GCGACCACAACAAACAACGCACACGGTGGTAGCACCGCGGCAGAGAAGAG
GGCATGCAGGACTCTTCGCAACCCAGAAGAAGAATCGTACGCAACGATGC
AAAGCGCCCCCTCAACAAGTGTCGGAGGGTTATCATCAAAGGCACGGCGT
TGTGAA
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