mRNA_D-herbacea_F_contig11.865.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: D8LQF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF5_ECTSI) HSP 1 Score: 237 bits (604), Expect = 2.240e-72 Identity = 112/148 (75.68%), Postives = 130/148 (87.84%), Query Frame = 2
Query: 224 RKVQGVQALSATLPSDLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVSEGNGFECHLNMDKVKNVSMLTKQSPAG-YDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGAEQTVA 664
RK +GVQ LSA++PSDL G+ERLEKF+ DC LLGP RFV +TDGAILEAVGSFDN+RY+DL KGR+ATVSEG GFECHLN DKVK++ M+TKQSP G +DLYITRFLD EG T+LSAMLHGV+G+YEPGA DYW KLRKTFG +Q+VA
Sbjct: 58 RKARGVQGLSASIPSDLKGRERLEKFLGDCALLGPTRFVSVTDGAILEAVGSFDNLRYTDLPKGRYATVSEGKGFECHLNCDKVKSIKMVTKQSPGGSFDLYITRFLDEEGNTLLSAMLHGVDGAYEPGAADYWDKLRKTFGEDQSVA 205
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A835YGN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGN4_9STRA) HSP 1 Score: 177 bits (449), Expect = 9.860e-50 Identity = 88/151 (58.28%), Postives = 113/151 (74.83%), Query Frame = 2
Query: 209 PKLHGRKVQGVQALSATLPSDLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVS-EGNGFECHLNMDKVKNVSMLTKQSP-AGYDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGAEQ 655
P H R ++ ++ ++ DL GKERL+K++ DC LLGPVRFV M DGAILEAVGSF+N+R++DL KG +AT+S + GFECHLN+D+V ++MLTK + A +DLYITRF+D EG+TVLSAML G YE GA YW KLR+ FGAEQ
Sbjct: 28 PSRHLRAASALRMMTVSI--DLKGKERLQKYLKDCELLGPVRFVSMNDGAILEAVGSFENLRFNDLEKGTYATLSGDDEGFECHLNIDRVNGITMLTKPAKDASHDLYITRFVDAEGKTVLSAMLQAEGGQYEEGAVAYWTKLREAFGAEQ 176
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A6U1NZN9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZN9_9STRA) HSP 1 Score: 137 bits (346), Expect = 1.670e-34 Identity = 75/151 (49.67%), Postives = 98/151 (64.90%), Query Frame = 2
Query: 212 KLHGRKVQGVQALSATLPSDLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVSEGN-GFECHLNMDKVKNVSMLTKQSPAGYD-LYITRFLDGEGETVLSAMLHGVE-GSYEPGATDYWAKLRKTFGAEQ 655
K H G AL AT L G RLEKF D LLG VRFV +TDGAILE VGS++N++ +DL KG+FAT + FECH+NMD+V ++M TK + G LYITRF D + +LS+MLH E G+YE G+ ++W +LR+ FG +Q
Sbjct: 46 KPHRTCKTGSCALEATSVDGLEGIPRLEKFFQDSSLLGAVRFVVVTDGAILETVGSYENMKINDLDKGKFATFKNSDKSFECHVNMDEVAKITMSTKNAKQGDRILYITRFYDNADKLILSSMLHPEEEGNYEDGSVEWWEQLREVFGEDQ 196
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: I2CRE5_NANGC (Heme utilization protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRE5_NANGC) HSP 1 Score: 126 bits (317), Expect = 1.680e-30 Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 2
Query: 269 DLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDL-AKGRFAT-VSEGNGFECHLNMDKVKNVSMLTKQSPAG-YDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGAEQ 655
DL GKERL++F++D LGP+RFVCM DG ILEAVGSF+N+ D+ +G AT S+ FE HLN+D V V M + G +D YI RF+ GEG+T+LS+MLH E +Y+ A +W KL+ FG Q
Sbjct: 54 DLVGKERLKRFLEDASFLGPIRFVCMNDGGILEAVGSFENMVSKDVPGRGELATFASDDKTFEAHLNLDMVSRVEMRQAVAKRGDHDNYIIRFISGEGKTLLSSMLHREEEAYDEDALAWWGKLKGVFGETQ 185
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A7S3EQ46_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EQ46_9EUKA) HSP 1 Score: 115 bits (288), Expect = 1.380e-26 Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2
Query: 212 KLHGRKVQGVQALSATLPSDLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDL-AKGRFATVS-EGNGFECHLNMDKVKNVSMLTKQSPAGYDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFG 646
++H +Q Q LS ++ + + +F+ D LGPVRFV GAILEAVGSF+N+R ++ KG ATVS E N FECH+ +VK ++K++ +YI R L EG+++LSA+LH +GSYE GA D+W LR FG
Sbjct: 19 RIHSGVMQ--QPLSCVRCAETAAPVAIGRFLRDLEFLGPVRFVVQGPGAILEAVGSFENLRIKEIPGKGPLATVSDEDNAFECHVRCGEVKTAQFVSKET-GDRTMYIIRLLSNEGDSLLSAILHAEDGSYEEGAVDFWEGLRDRFG 162
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A7S3RZZ8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RZZ8_EMIHU) HSP 1 Score: 115 bits (288), Expect = 2.140e-26 Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 2
Query: 299 FIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVSEGNGFECHLNMDKVKNVSMLTKQSPAGYDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGA 649
F+ D LGP RFV +GAILEAVG+F+ +R S+ KG ATVS G+ FECH+ + +V + S ++K+ P G L+I R LD EG +LSA+LH YE GA ++ +LR+ FGA
Sbjct: 60 FLSDLEFLGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKALHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 176
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A7S3X2R9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X2R9_9SPIT) HSP 1 Score: 114 bits (285), Expect = 4.070e-26 Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 2
Query: 221 GRKVQGVQALS-ATLPSDLSGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVSEGNGFECHLNMDKVKNVSMLTKQSPAGYDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFG 646
G + V ++S A+LP +G + +F+ D LGP RFV +GAILEAVG+FD++R S+ G ATVS FECH+ +VK + +TK+ G LYI R LD + ++LS +LH YE GA ++W +L+ FG
Sbjct: 21 GLPSRAVASISRASLPVMAAGPVGIRRFLGDLEFLGPCRFVVQGNGAILEAVGAFDDLRVSNTPNGMLATVSVEKDFECHIKTWQVKAATFVTKEGAEGKQLYIVRLLDADDTSLLSVILHSGSDGYEEGAVEFWNQLKDRFG 163
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: R1D395_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D395_EMIHU) HSP 1 Score: 111 bits (277), Expect = 2.260e-25 Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 2
Query: 320 LGPVRFVCMTDGAILEAVGSFDNIRYSDLAKGRFATVSEGNGFECHLNMDKVKNVSMLTKQSPAGYDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGA 649
LGP RFV +GAILEAVG+F+ +R S+ KG ATVS G+ FECH+ + +V + S ++K+ P G L+I R LD EG +LSA+LH YE GA ++ +LR+ FGA
Sbjct: 24 LGPCRFVVQGEGAILEAVGAFEELRVSETPKGALATVSVGDSFECHVRLKEVASASFVSKEKPDGKALHIVRLLDKEGGPLLSAILHAGPDGYEDGAVSFFERLREKFGA 133
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A8J4GBI9_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GBI9_9CHLO) HSP 1 Score: 102 bits (253), Expect = 8.160e-22 Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 2
Query: 290 LEKFIDDC--GLLGPVRFVCMTDGAILEAVGSFDNIRYSDLA-KGRFATV-SEGNGFECHLNMDKVKNVSMLTKQSPAG-YDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGAEQT 658
L+ +DD LG VRF+ + DGAILE+V +F ++RY+++ +G ATV SE FECH+ + KV+ V + ++ +G YD+Y TRFL + + ++S +LHG +G Y+P A + W L +G T
Sbjct: 35 LQSLLDDAVNAGLGKVRFIVLGDGAILESVNNFGSVRYNEVPNRGVLATVASEDKSFECHITLSKVREVKFVKSKAKSGEYDIYATRFLGADSKVLMSCLLHGQQGQYDPAAVEAWTNLATKYGESVT 162
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Match: A0A7S1SS16_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SS16_9CHLO) HSP 1 Score: 100 bits (249), Expect = 6.000e-21 Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 2
Query: 218 HGRKVQGVQALSATLPSDL----SGKERLEKFIDDCGLLGPVRFVCMTDGAILEAVGSFDNIRYSDLA-KGRFATV-SEGNGFECHLNMDKVKNVSMLTKQSPAG-YDLYITRFLDGEGETVLSAMLHGVEGSYEPGATDYWAKLRKTFGAEQTVA 664
HG +V + +A P L S E ++ I+D LG +RF+C+ DG ILE+ FD + Y+++ KG + T+ + FE H+ + KV V M+ + G YD+Y FL +G +L+ +LHG EG+YEPGA + W LR G TVA
Sbjct: 35 HGERVPTTRHRAAIRPRILAQAASSLEGVKAVIEDLSTLGTLRFICIGDGGILESAQKFDEVSYNEVPNKGTYCTLKTTDKAFEAHIALAKVSEVKMVKARPRTGEYDIYKVSFLREDGGPMLTCLLHGPEGNYEPGAIEAWEALRAKNGETVTVA 190 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig11.865.1 >prot_D-herbacea_F_contig11.865.1 ID=prot_D-herbacea_F_contig11.865.1|Name=mRNA_D-herbacea_F_contig11.865.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=209bp MFRSRINSTVIVLAMLCLVRDSLGFFHAIPSAVSCPSVGARSSFVRTSLPback to top mRNA from alignment at D-herbacea_F_contig11:1109439..1114128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig11.865.1 ID=mRNA_D-herbacea_F_contig11.865.1|Name=mRNA_D-herbacea_F_contig11.865.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4690bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1109439..1114128+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1109439..1114128+ >mRNA_D-herbacea_F_contig11.865.1 ID=mRNA_D-herbacea_F_contig11.865.1|Name=mRNA_D-herbacea_F_contig11.865.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1254bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1109439..1114128+ (Desmarestia herbacea DmunF female)back to top |