mRNA_D-herbacea_F_contig11.864.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.864.1
Unique NamemRNA_D-herbacea_F_contig11.864.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig11.864.1 vs. uniprot
Match: D8LQF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.340e-18
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 GPDPEDSDFEDEEVDEDAAFDSADEERYGELMETISDRRSGKQGGASPKDDASXXXXXXXXXG---GMSLMDMLNANEAAEEAQ 243
            GP PEDSDFEDEEVDEDAAFDSADE RYGELM+TI  RRSGKQGG+S +    XXXXXXXXX    GMS+MDML ANEAAE AQ
Sbjct:   98 GPGPEDSDFEDEEVDEDAAFDSADEARYGELMDTILQRRSGKQGGSSDEXXXXXXXXXXXXXXXXXGMSVMDMLAANEAAELAQ 181
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQF6_ECTSI2.340e-1877.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1106723..1108038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D8LQF6
Preferred nameUTP14A
KEGG koko:K02350,ko:K14567
KEGG Pathwayko01100,ko01524,ko03008,ko03460,map01100,map01524,map03008,map03460
KEGG ModuleM00293
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016319,GO:0019953,GO:0022414,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051704,GO:0060322,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.endopeptidase inhibitor activity
EggNOG OGsCOG5644@1,KOG2172@2759
EC2.7.7.7
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03400
Exons3
Model size303
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.864.1prot_D-herbacea_F_contig11.864.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1106723..1108038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.8028505-CDS-D-herbacea_F_contig11:1106722..11068951622927508.8028505-CDS-D-herbacea_F_contig11:1106722..1106895Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1106723..1106895 -
1690790207.4453444-CDS-D-herbacea_F_contig11:1106722..11068951690790207.4453444-CDS-D-herbacea_F_contig11:1106722..1106895Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1106723..1106895 -
1622927508.814818-CDS-D-herbacea_F_contig11:1107367..11074171622927508.814818-CDS-D-herbacea_F_contig11:1107367..1107417Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1107368..1107417 -
1690790207.462795-CDS-D-herbacea_F_contig11:1107367..11074171690790207.462795-CDS-D-herbacea_F_contig11:1107367..1107417Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1107368..1107417 -
1622927508.824321-CDS-D-herbacea_F_contig11:1107958..11080381622927508.824321-CDS-D-herbacea_F_contig11:1107958..1108038Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1107959..1108038 -
1690790207.470375-CDS-D-herbacea_F_contig11:1107958..11080381690790207.470375-CDS-D-herbacea_F_contig11:1107958..1108038Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1107959..1108038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.864.1

>prot_D-herbacea_F_contig11.864.1 ID=prot_D-herbacea_F_contig11.864.1|Name=mRNA_D-herbacea_F_contig11.864.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=101bp
GPDPEDSDFEDEEVDEDAAFDSADEERYGELMETISDRRSGKQGGASPKD
DASDSEEEEEEEGGMSLMDMLNANEAAEEAQGGPNGNTQAKDKGKGKARS
D
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mRNA from alignment at D-herbacea_F_contig11:1106723..1108038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.864.1 ID=mRNA_D-herbacea_F_contig11.864.1|Name=mRNA_D-herbacea_F_contig11.864.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1316bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1106723..1108038- (Desmarestia herbacea DmunF female)
GGCCCGGACCCGGAGGACTCCGACTTCGAAGACGAAGAGGTGGACGAGGA
TGCTGCCTTCGATAGCGCCGATGAAGAGCGGTGAGACTATCTATCGGATG
GGATATCCTACCTCGCTGTACCACGGTGCCTATCGTGTACACAGCAACAG
CCTGCGCTATGATGATGTGTTTTCGGAGACAGCAGCCGATTATCGTGCAC
ATGACAAACATCATGTCGAAGCAGCTGCTCCATGGCTGATAAGCGTATAT
TATAGTCTATTGATAGGTGTTTGCCCAGAGCAGTCGGGTGCCTAGTGATC
TCGTAGTGATGATATACAAGCCGGCGCTCCCATATTTACCGCACAGCCAA
AACGTCGTGCTGTTGGCGTTTGGTCTTCTGAGAGACAACACTACGAACTG
TAGTGTCGTGGTTAAAGTAGGAACTGGTAGCACCCCGCAGCGCGACCGCG
ATTAATTGTTTTCCCGGCGAATGTAGTCATGGGTATCATAGTACTACTAC
TGTACTGTTGTTCACCACTACTAGTGTCAGCGTCACTGTCGTTCAAAAAC
GCACAAACAGCAAAAAGACGAAACAGCTGCTAAGCTCTGCTCTCACCCAC
GGTCGTCTTGTGCGTGTGAAGGTACGGAGAGCTCATGGAAACCATCTCCG
ACCGCCGAAGCGGGAAACAAGGTAAGACATACTTGTGTGTTTGCTGTTGT
GTGATGATTTGCCTTTGGAAAGCGTGGTAGATGGCACATCGTGCAAGCGT
CAGGGATGTGCGCCCTACATATATTTTGTTGGTTTGAGGGCGTGGTGGGT
TGTGGAGTATGCTGGTTTAAGGAGCAGGGCCAATAGCACTCGCACGTCGA
AAAGAGCGTGGCTTCTTAGGGCAATATGTTTGTCCTTCTGTCTGTATTTT
TCGTTGAGGGTGGAGATGCGCCTCCTATCACTGCAACGGTTTCTTGGATG
GTCATGTATCTCTCCTGGTTTTGGTAGCATTCATAACATCATAACTTCAC
GGTATCATAGAAACGTTTGCGCGGCAGTCACTTTGTCTTAGGGGATTGCT
GCACTGCTGTAATTGTGTTTAACTATACCCGTTGTACAACAACTATTGAG
ACACTTGCACCTCCGTACGACTCCGCACGGGTCAAACCTGCAGGGGGCGC
TAGTCCAAAAGACGACGCAAGCGATAGCGAAGAGGAAGAGGAAGAGGAAG
GAGGGATGTCTCTCATGGACATGCTAAACGCTAACGAGGCCGCCGAAGAA
GCTCAGGGCGGCCCCAACGGCAACACACAAGCCAAGGACAAGGGGAAAGG
GAAGGCCAGAAGTGAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1106723..1108038-

>mRNA_D-herbacea_F_contig11.864.1 ID=mRNA_D-herbacea_F_contig11.864.1|Name=mRNA_D-herbacea_F_contig11.864.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=606bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1106723..1108038- (Desmarestia herbacea DmunF female)
GGCCCGGACCCGGAGGACTCCGACTTCGAAGACGAAGAGGTGGACGAGGA
TGCTGCCTTCGATAGCGCCGATGAAGAGCGGGCCCGGACCCGGAGGACTC
CGACTTCGAAGACGAAGAGGTGGACGAGGATGCTGCCTTCGATAGCGCCG
ATGAAGAGCGGTACGGAGAGCTCATGGAAACCATCTCCGACCGCCGAAGC
GGGAAACAAGGTACGGAGAGCTCATGGAAACCATCTCCGACCGCCGAAGC
GGGAAACAAGGGGGCGCTAGTCCAAAAGACGACGCAAGCGATAGCGAAGA
GGAAGAGGAAGAGGAAGGAGGGATGTCTCTCATGGACATGCTAAACGCTA
ACGAGGCCGCCGAAGAAGCTCAGGGCGGCCCCAACGGCAACACACAAGCC
AAGGACAAGGGGAAAGGGAAGGCCAGAAGTGACGGGGCGCTAGTCCAAAA
GACGACGCAAGCGATAGCGAAGAGGAAGAGGAAGAGGAAGGAGGGATGTC
TCTCATGGACATGCTAAACGCTAACGAGGCCGCCGAAGAAGCTCAGGGCG
GCCCCAACGGCAACACACAAGCCAAGGACAAGGGGAAAGGGAAGGCCAGA
AGTGAC
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