mRNA_D-herbacea_F_contig11.858.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.858.1
Unique NamemRNA_D-herbacea_F_contig11.858.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig11.858.1 vs. uniprot
Match: D8LQG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG4_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.890e-24
Identity = 97/283 (34.28%), Postives = 126/283 (44.52%), Query Frame = 1 
Query:   13 ANSKNWRVRYPRRSPHPPHRRIRLEVVDRAAAAGSDRALEIGAPKTLGEKSRPSASSRQHPHQVERRNMDGAATIVYNGAEDTAAAVVVRGDET---------GRAVRFDPVVKLILVPTRSDLG-WLSEHLWWGREDFLQFRLGAVVDASTEVLRRSLGQQHSRGRKAEDANRPRYSRPFTKSTPTSEPLYGHPSEIVPALRVGHLKIRLPSP--VRVQPPTPPTSPAN--ESGAGGGAKDIKKSFPPEEAVPLKGPAFTKGER--SYIENFDGLVGLGGFP 813
            ANS++WRVRYP+R+P P     R +    A    + RA                                           D    V +  ++          GRAVRFD VVKLILVP+R DL   LS+ LWW  +D+LQFRLGA+V+ S+ VL R+L  + S+  +   A RP Y     K     E + GH     P +R    K+ L S    RVQP TPP SPAN  E+  G G  D         + P +     KG +  ++ E FDGLVGLG  P
Sbjct:   40 ANSEHWRVRYPQRTPIPRRPSTRFDARRSAVGPAAARADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGTGVELVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSKRIQPPAAARPTYQ--HGKIAQALERMDGHGGSTRPPIR-RQFKVHLSSSPSFRVQPVTPPPSPANANETSIGRGVADEMDHPDASGSSPRR-----KGHKGWTFAEGFDGLVGLGLLP 314
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG4_ECTSI2.890e-2434.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:1011826..1015178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005540.1
Exons3
Model size819
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.858.1prot_D-herbacea_F_contig11.858.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 1011826..1015178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.7961829-CDS-D-herbacea_F_contig11:1011825..10120471622927507.7961829-CDS-D-herbacea_F_contig11:1011825..1012047Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1011826..1012047 -
1690790206.935291-CDS-D-herbacea_F_contig11:1011825..10120471690790206.935291-CDS-D-herbacea_F_contig11:1011825..1012047Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1011826..1012047 -
1622927507.8098392-CDS-D-herbacea_F_contig11:1012329..10125161622927507.8098392-CDS-D-herbacea_F_contig11:1012329..1012516Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1012330..1012516 -
1690790206.9442654-CDS-D-herbacea_F_contig11:1012329..10125161690790206.9442654-CDS-D-herbacea_F_contig11:1012329..1012516Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1012330..1012516 -
1622927507.819804-CDS-D-herbacea_F_contig11:1014768..10151781622927507.819804-CDS-D-herbacea_F_contig11:1014768..1015178Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1014769..1015178 -
1690790206.9529948-CDS-D-herbacea_F_contig11:1014768..10151781690790206.9529948-CDS-D-herbacea_F_contig11:1014768..1015178Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 1014769..1015178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.858.1

>prot_D-herbacea_F_contig11.858.1 ID=prot_D-herbacea_F_contig11.858.1|Name=mRNA_D-herbacea_F_contig11.858.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=273bp
MPTTANSKNWRVRYPRRSPHPPHRRIRLEVVDRAAAAGSDRALEIGAPKT
LGEKSRPSASSRQHPHQVERRNMDGAATIVYNGAEDTAAAVVVRGDETGR
AVRFDPVVKLILVPTRSDLGWLSEHLWWGREDFLQFRLGAVVDASTEVLR
RSLGQQHSRGRKAEDANRPRYSRPFTKSTPTSEPLYGHPSEIVPALRVGH
LKIRLPSPVRVQPPTPPTSPANESGAGGGAKDIKKSFPPEEAVPLKGPAF
TKGERSYIENFDGLVGLGGFPS*
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mRNA from alignment at D-herbacea_F_contig11:1011826..1015178-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.858.1 ID=mRNA_D-herbacea_F_contig11.858.1|Name=mRNA_D-herbacea_F_contig11.858.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3353bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1011826..1015178- (Desmarestia herbacea DmunF female)
ATGCCAACAACAGCAAATTCTAAAAACTGGAGGGTGCGATACCCAAGAAG
AAGTCCTCACCCCCCGCACAGGCGGATCAGGCTGGAAGTCGTTGACCGGG
CGGCGGCAGCAGGCTCCGACCGCGCCCTTGAGATAGGCGCTCCTAAGACG
CTCGGCGAAAAATCAAGACCCTCGGCCTCATCTCGACAGCACCCGCATCA
GGTGGAGAGAAGGAACATGGACGGTGCCGCGACAATTGTCTACAACGGTG
CGGAGGATACAGCGGCAGCCGTTGTTGTTCGGGGTGATGAGACGGGCAGG
GCTGTGCGTTTCGATCCCGTGGTGAAGTTGATACTCGTGCCTACGCGCAG
CGACTTGGGCTGGCTCAGCGAGCACCTCTGGTGGGGGAGGGAGGACTTTC
TGCAGTTCAGGTGAAAGGGGAACGGGGGGGCGCGCGGTGTTTTGTGTGTA
TGTGTGTGTGTGTGTGAGTTTGTTTTGCATAAAGCGTGGTCCGTTCTCTC
TGTTTCTGCTTGTTGCCCCGTGGTTGACGCCTGACGATGCTGTCGTTCGT
ATGTACTCGTTCATAGCGCTGGTTTTGTTTGGTCGTTGGGATGATCTATG
AGATGGAAGCAGCACACAACAGATGTGCCTTATCTGAGGACTGATAGACT
CCGCGCGACCGATGTATCACACAGCAGCATTATAAGTGAGGTTGACGATT
ATCCCCTAATTTAGCTCCCGAACCAGTTTGGAACGTCGCGGCCGGTGTAT
TATGATAGTAATTATAACTAAAAATACGAACAGTGACGCGACACAGTGAA
GTTTTTGCGAATATCCCCTGGCTCTCGAAGCAGTATAGAACGTCACATCT
CATATACAAGGATTTGTAAAAGGTAAAGTAACAGTATGATAGTACTCGTA
CAAGTAGTGAAGTTGTCGATTATCCCCTGGCTCCCAAACCAGTTTGGAAC
GTCACGGCTGATGAACTGATGTACTTGTATCTAAACAGAAACAGTTGTAA
ATGTAACGATAGGTGATAGGATAGGCAGGTGGGTTATCAATGGGTGGGTG
GATATACCGCTAGTGCTGTGTGCCTTGACCGAATCTCAAAGCCGTGGACG
TCTCTTATGTCGTGAGTCGTATGAAAGCGCGATAGTGGTATACTTATATA
CTCTACATTTCGATTTGCGGACAGTGTAACAGGTGAAACGGTAGATGGAA
GCAGCCCACCACTGAACCACGAAGTCAACGCTGATTGGAGTGGTTCAGTG
ATGGACTGCTGCTATCTAATAAAAAGGAAGTCTCGGATCCCTGCCATTGT
TAGATTGCTCTCAGCCCACCACCGAACCACTCAGTCAGCGCTGACTTGGT
TCAGTGGTGGGCTGCTTCTATCTAAAAATATTTAGGGAACCACTAAGTCA
GCGCTGACTGAGTGGTTCAGTGGGGGGCTGCTTCTATCTAACTAACAAGA
TGTAGGCGCTCTTTTCGGCGTTTGTGTCATGCTTTTCGACCTTCCCGAAC
TCGTGTGAGGAAGCCCTGTGGCCGCTTGCTGCACTTTCATTTATGGGAAG
CCAACCCACGCATACCTTGACAGTACATAGTAGTGCGGAATAACTCGACC
AAATAAAAACTCAGAATGTCGTGTGTATCGTATTTTAGACTACTTGTATC
ATGCGAGTAAACTGCAGTAGTTATCATATGATATGATAGTATTAATATTA
GTTGTATAGTATGACAGTATGACAAGATTGTAATGTGCTTATGTGTAGAG
AAGGCACATGATGTGTTTTTTTTTTAGTTAAATAATAAGCGATGCGGAGA
ATGACAATTGAATTTTACAAGTTCCTCGAGAACGATCCCCATGCCCATTA
CGATTGCTATATATATTTTTTAATAACTATAAATACATTATTAGCCGTGA
AGTTCCAAAATTAGTTCGGGGGCCAGGGGATAATTCGAAGCCGCCTTAAC
ACCCATTGTTTTTTTAGGCGGAATCTTTTAGGATGTTCGTTTTATCAAAT
GATTAAGCAACAACGTGGGCTGTCCAGCAAAAAAATCGGAAACTTCCACC
ACTACCTACCGCTAACCCTAACCCTAACCCTAACGAACACACTGTACAAT
AATATAGAGTCAAACCTTTGTGAATTTCCTGTAACGTTCCGCCCTACAAC
ATGATCAACCATTGTTGCTAAGCCTACTGGTGCGATACTTGATTGTGGAG
CCAATTGGCGATGCGTTTGTTGAAAAGTTTAGGGCTGGGGGGTGAAACAA
AGGTGGAAATGTTTGTGCCCCGTCTTTTCCGATCGTCTTGACCAACCTCT
TTGCTGTTGTTCTCGTTACTGATGCTGATGATCATGGTTATTGGCGTACT
CTGGCGCGCGCCATTTGATGCACCTGTTGTGACGTTTGAAATCGCAATAT
TGCCGAATATATAGACGCTCTATCCCAGCCTCCGCCGGGCGACCCTGTAC
AAGAGGAGGGGCTATCACATGATACTCTTCCGCGGATATCTACTCACACG
TCACCACGCCTACCCTGAACTCGTGGGCCTGCTTTTCTGCTGTACCATTT
GCTGCATATTAGTAATGTGGTGAGCATCGGCATAGTGCCATGTCGCTTAC
CTTGTGTCTCCTCCTGCTGGCCCTGATGTTTGCTATATTTTTGTTTGCTC
ACGTTCCGTCAGACTGGGTGCTGTCGTCGACGCCAGCACGGAAGTACTGC
GAAGAAGTCTAGGCCAGCAGCATTCTAGAGGAAGGAAGGCGGAGGACGCT
AACCGTCCCCGGTATAGCAGGCCTTTCACGAAGTCGACGCCGACTAGCGA
GCCGTTATATGGTCATCCCTCGGAGATCGTGCCGGCGCTACGGGTGGGGG
TTTGTTTGTTTACCAATTAGTCGCAAAAAATGGTTGGCATACAGTACTTG
GTACGTACTACCTGGTACTGCGTAAAAAGCGGACTAACTCTACCGCTAAT
AACCCAACTGAATATCACACACACATATATATATATATATCGTCAACCAC
TCGTTCGAGTAACCGGTAAACCACTACTTTTTAGTCTCCCTTTAGCCCTC
CTTAAGGTTAACCCTATCCCTGACGCTATACTGCTACTGCAGGTGGTGGA
CCACCCCCGCAGCGGGCGTTCGGCGTCGCAGCACTTGAAGATCCGTTTGC
CGTCCCCCGTGCGCGTTCAGCCGCCGACACCGCCCACCTCTCCGGCGAAC
GAAAGCGGCGCTGGGGGGGGTGCGAAGGACATAAAAAAAAGTTTTCCACC
AGAGGAGGCGGTGCCGCTGAAAGGCCCAGCTTTTACGAAGGGCGAGCGGA
GCTATATTGAGAATTTCGACGGTCTCGTTGGCCTCGGAGGCTTTCCTTCA
TGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:1011826..1015178-

>mRNA_D-herbacea_F_contig11.858.1 ID=mRNA_D-herbacea_F_contig11.858.1|Name=mRNA_D-herbacea_F_contig11.858.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1638bp|location=Sequence derived from alignment at D-herbacea_F_contig11:1011826..1015178- (Desmarestia herbacea DmunF female)
ATGCCAACAACAGCAAATTCTAAAAACTGGAGGGTGCGATACCCAAGAAG
AAGTCCTCACCCCCCGCACAGGCGGATCAGGCTGGAAGTCGTTGACCGGG
CGGCGGCAGCAGGCTCCGACCGCGCCCTTGAGATAGGCGCTCCTAAGACG
CTCGGCGAAAAATCAAGACCCTCGGCCTCATCTCGACAGCACCCGCATCA
GGTGGAGAGAAGGAACATGGACGGTGCCGCGACAATTGTCTACAACGGTG
CGGAGGATACAGCGGCAGCCGTTGTTGTTCGGGGTGATGAGACGGGCAGG
GCTGTGCGTTTCGATCCCGTGGTGAAGTTGATACTCGTGCCTACGCGCAG
CGACTTGGGCTGGCTCAGCGAGCACCTCTGGTGGGGGAGGGAGGACTTTC
TGCAGTTCAGATGCCAACAACAGCAAATTCTAAAAACTGGAGGGTGCGAT
ACCCAAGAAGAAGTCCTCACCCCCCGCACAGGCGGATCAGGCTGGAAGTC
GTTGACCGGGCGGCGGCAGCAGGCTCCGACCGCGCCCTTGAGATAGGCGC
TCCTAAGACGCTCGGCGAAAAATCAAGACCCTCGGCCTCATCTCGACAGC
ACCCGCATCAGGTGGAGAGAAGGAACATGGACGGTGCCGCGACAATTGTC
TACAACGGTGCGGAGGATACAGCGGCAGCCGTTGTTGTTCGGGGTGATGA
GACGGGCAGGGCTGTGCGTTTCGATCCCGTGGTGAAGTTGATACTCGTGC
CTACGCGCAGCGACTTGGGCTGGCTCAGCGAGCACCTCTGGTGGGGGAGG
GAGGACTTTCTGCAGTTCAGACTGGGTGCTGTCGTCGACGCCAGCACGGA
AGTACTGCGAAGAAGTCTAGGCCAGCAGCATTCTAGAGGAAGGAAGGCGG
AGGACGCTAACCGTCCCCGGTATAGCAGGCCTTTCACGAAGTCGACGCCG
ACTAGCGAGCCGTTATATGGTCATCCCTCGGAGATCGTGCCGGCGCTACG
GGTGGGGACTGGGTGCTGTCGTCGACGCCAGCACGGAAGTACTGCGAAGA
AGTCTAGGCCAGCAGCATTCTAGAGGAAGGAAGGCGGAGGACGCTAACCG
TCCCCGGTATAGCAGGCCTTTCACGAAGTCGACGCCGACTAGCGAGCCGT
TATATGGTCATCCCTCGGAGATCGTGCCGGCGCTACGGGTGGGGCACTTG
AAGATCCGTTTGCCGTCCCCCGTGCGCGTTCAGCCGCCGACACCGCCCAC
CTCTCCGGCGAACGAAAGCGGCGCTGGGGGGGGTGCGAAGGACATAAAAA
AAAGTTTTCCACCAGAGGAGGCGGTGCCGCTGAAAGGCCCAGCTTTTACG
AAGGGCGAGCGGAGCTATATTGAGAATTTCGACGGTCTCGTTGGCCTCGG
AGGCTTTCCTTCATGACACTTGAAGATCCGTTTGCCGTCCCCCGTGCGCG
TTCAGCCGCCGACACCGCCCACCTCTCCGGCGAACGAAAGCGGCGCTGGG
GGGGGTGCGAAGGACATAAAAAAAAGTTTTCCACCAGAGGAGGCGGTGCC
GCTGAAAGGCCCAGCTTTTACGAAGGGCGAGCGGAGCTATATTGAGAATT
TCGACGGTCTCGTTGGCCTCGGAGGCTTTCCTTCATGA
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