mRNA_D-herbacea_F_contig11.852.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.852.1
Unique NamemRNA_D-herbacea_F_contig11.852.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig11.852.1 vs. uniprot
Match: D8LQF4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 8.310e-46
Identity = 84/127 (66.14%), Postives = 103/127 (81.10%), Query Frame = 2 
Query:    2 EMDSFGRGFRSYHLAVANNALLVWYVRRRFSEFLALHVALVKGGDGASGAGGD-IPVNRLPKPPTRTFGMMVILPERMERMRRGQMDVYMQELLAIPEASTNKLVLSFLGLMSTSRHDLMSPANPKK 379
            E DSFGRG+R+YHLAVANNA LVWY+++RFSEF+ALH  L   G GA G  GD IP +RLPKPP RTFGM+ + PE+MER+RR Q++ Y+QELL+IPEA  N+ VLSFLGL+S+SRHDLM P NP +
Sbjct:   21 ETDSFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHATL--SGRGARGGEGDRIPEDRLPKPPMRTFGMLRLFPEKMERLRRDQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMFPPNPNR 145
[Close]
BLAST of mRNA_D-herbacea_F_contig11.852.1 vs. uniprot
Match: A0A6H5JAA8_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.910e-44
Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 2 
Query:    2 EMDSFGRGFRSYHLAVANNALLVWYVRRRFSEFLALHVALVKGGDGASGAGGD-IPVNRLPKPPTRTFGMMVILPERMERMRRGQMDVYMQELLAIPEASTNKLVLSFLGLMSTSRHDLMSPANPK 376
            E DSFGRG+R+YHLAVANNA LVWY+++RFSEF+ALH AL   G GA G  GD IP +RLP PP RTFGM+ + P +MER+RR Q++ Y+QELL+IPEA  N+ VLSFLGL+S+SRHDLM P NPK
Sbjct:  499 ETDSFGRGYRAYHLAVANNASLVWYLQKRFSEFVALHAAL--SGRGARGGEGDRIPEDRLPAPPMRTFGMLRLFPVKMERLRRHQLERYLQELLSIPEALANRAVLSFLGLVSSSRHDLMFPPNPK 622
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQF4_ECTSI8.310e-4666.14PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JAA8_9PHAE7.910e-4466.67PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:912666..916416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size476
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.852.1prot_D-herbacea_F_contig11.852.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 912666..916412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.8447256-CDS-D-herbacea_F_contig11:912665..9127331622927506.8447256-CDS-D-herbacea_F_contig11:912665..912733Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 912666..912733 -
1690790206.397865-CDS-D-herbacea_F_contig11:912665..9127331690790206.397865-CDS-D-herbacea_F_contig11:912665..912733Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 912666..912733 -
1622927506.8608437-CDS-D-herbacea_F_contig11:913236..9132981622927506.8608437-CDS-D-herbacea_F_contig11:913236..913298Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 913237..913298 -
1690790206.406867-CDS-D-herbacea_F_contig11:913236..9132981690790206.406867-CDS-D-herbacea_F_contig11:913236..913298Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 913237..913298 -
1622927506.8733082-CDS-D-herbacea_F_contig11:914174..9142481622927506.8733082-CDS-D-herbacea_F_contig11:914174..914248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 914175..914248 -
1690790206.4155598-CDS-D-herbacea_F_contig11:914174..9142481690790206.4155598-CDS-D-herbacea_F_contig11:914174..914248Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 914175..914248 -
1622927506.885206-CDS-D-herbacea_F_contig11:915512..9156091622927506.885206-CDS-D-herbacea_F_contig11:915512..915609Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 915513..915609 -
1690790206.4254184-CDS-D-herbacea_F_contig11:915512..9156091690790206.4254184-CDS-D-herbacea_F_contig11:915512..915609Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 915513..915609 -
1622927506.8972638-CDS-D-herbacea_F_contig11:916242..9164121622927506.8972638-CDS-D-herbacea_F_contig11:916242..916412Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 916243..916412 -
1690790206.436936-CDS-D-herbacea_F_contig11:916242..9164121690790206.436936-CDS-D-herbacea_F_contig11:916242..916412Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 916243..916412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.9100072-UTR-D-herbacea_F_contig11:916412..9164161622927506.9100072-UTR-D-herbacea_F_contig11:916412..916416Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 916413..916416 -
1690790206.4524167-UTR-D-herbacea_F_contig11:916412..9164161690790206.4524167-UTR-D-herbacea_F_contig11:916412..916416Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 916413..916416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.852.1

>prot_D-herbacea_F_contig11.852.1 ID=prot_D-herbacea_F_contig11.852.1|Name=mRNA_D-herbacea_F_contig11.852.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=157bp
MDSFGRGFRSYHLAVANNALLVWYVRRRFSEFLALHVALVKGGDGASGAG
GDIPVNRLPKPPTRTFGMMVILPERMERMRRGQMDVYMQELLAIPEASTN
KLVLSFLGLMSTSRHDLMSPANPKKYDDGARTPRGRGGDVSAAMLRMTGR
VTVKGNG
back to top

mRNA from alignment at D-herbacea_F_contig11:912666..916416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.852.1 ID=mRNA_D-herbacea_F_contig11.852.1|Name=mRNA_D-herbacea_F_contig11.852.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3751bp|location=Sequence derived from alignment at D-herbacea_F_contig11:912666..916416- (Desmarestia herbacea DmunF female)
GGAGATGGACTCCTTCGGTCGAGGATTCCGGTCGTACCACCTGGCAGTTG
CCAACAACGCCCTGTTGGTGTGGTACGTGCGCAGGCGTTTCTCGGAGTTC
CTAGCCCTGCATGTGGCGTTGGTGAAGGGCGGGGATGGTGCTAGTGGTGC
CGGTGGGGACATCCCTGTGAACAGGTGACAGCATTTTCGTTACGTTACGA
GAGGGAAGGGGAGGGGGCTAGTGGCGGGGGCCAATGGGGGGGATAGCTGG
CCCTCGTATGTGTGTGTATATGTCCGAGTAGTGTGGCGAAGCGATGCATG
TAAATCTTCGCGTTCTTGGAGAATGGGGGTGGAGAGGCGGTGCAATACGT
GGTCCGCTGCTAGTGTGTGTAGATTTGAGCTGAATGTTTTAGATAGACGT
TGATACTCTGCCGTAATGTAAGGTAACCTTGTCATTTGACAGAAGGAAGC
TGCCGGTGCACAGCGCGTTGCGAGAAGCGAACTTGGTTGTGCCGTTATCC
GCTGTTCCTGCTACTGTCTCCAATTTTGGTTTAATTGTCCCCCCCCCCCT
GTCTTACGATAGCCCGGCGAAGTTTTTGCGATGTCTCCTCTAAAACAACA
ATGGTTGTGCGGTTCTTCCGGGAACGCGTTTTTTTTTTTTGTTACCCTGT
TCTCCCGCGTTGTTGCGACTTGTGTTATTCCAGCGCTCGGAGGGGGGGTG
GGGTACCGCGGATTATGTGTGAGTTACCGGCGCGTCGTGTGTCTGTTGCT
GCAGTCCTTGAGAGTGTGTACTGACGCGGCTCGACATCTGTCGGTTGGCG
TATTCAGACTGCCGAAACCGCCGACGCGAACGTTCGGAATGATGGTGATA
TTGCCGGAGAGGATGGAACGGATGAGAAGAGGTCAGATGGACGTCTACAT
GCAGGTGGGAAATTTTGCTCCAGTAACCCGTACCCCCTTTGGCCTCCTCG
TTGAAAAAAAGGAAACGGTGTGAATAGACAGGGTATTCAGTAGCACTGTT
ATACGTTGGTATACATGTGCCCCGAAGACGTTTTTTGGTCATACCTTTCC
CCGACTTAGCTTCGCCCGCAACTCGAAACACAAATCTGCCAAATAGTGAA
CGAGCCGGAAGCAGGCAGCCTGAGTTTCTTACTCCCAACATCTTGTTAAT
GTTGGTCTTGTTGGTCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAT
GGTTGTTGTTGTTCGTAAGAACAACTATAACGGTGGCCCCTAATAAATAG
CCCACAATAAGCCCCAACACCCGCGTTGGCGCCTGCATCTTACGAACTGC
CACTACGTTAATCCCGGATCCGATTCGTTTAAACAACGCCGTTGATCACA
GGCTTTCCATCGATGCCATACTTTTACTATTCAGATAATAATTGGGGCAA
GGGTAAGGGTAGACCTCCTCCCGCGGCCTTCAGAGTCCCTTTTTAAAGTT
AACACGGGGCCGATCAACAGATAACCCGCTGAAGAGGACACCACGTTAGG
ATTTTTTTTTTTTACTAGACACGAGGATGTACACAGCCGGTATTTTGTAC
CCGCACGATTCTCTTGTTGCGCGATCTTTGAAAAACGAATCTTTCGCCGA
AAGCGTTTTTTGTTGTGTTCCGTGGAATTATCGGTTTCGTGGCCTGTGTA
GCATACCGTGTGTGTGCTGTTTCAACGATCCTCGCCAAACTATTTACGTT
CAGCGTAAACGGGTTTCGCCCATTATCGGTTACACCTCGGTGGAATCTTC
GGTTTCACGATCTATGTAGCATACCGCGTGTGTGCTGTTTCAGTGATCCT
CGCCATCTATTAGTGTTTGTGTGTGAGGGAGGGGCTACGTACCGTACTGC
ATGTGCCCCCAGAAAAGAAACGTTGGCGTGGTGGCCCGGGACAATGCGGA
AGAAGCGGCGAGACTGAATCTGAATTTGCGACACGTGTTTTTGGCTGATT
GTGGAGATGATCGTTTAACTTTGGCTCTAAGGCAATTAATTGCAACGGTT
GTTTTTAACTTGACGGCCGGGAGAACTTGGCTGCGCCTTTGTTTTGTTTA
TTGTTTCTCACGCGGTGTAAAGCTGTAGCGTGGGATCGAACACCTTCCTT
AACAACTGCCGCCACTATCCTACTGCATTGGCGTGTCCCTCGTACCCCCG
CCCCTCCGTCCCCCTCAGGAACTGTTGGCGATTCCCGAGGCTTCGACGAA
CAAGCTGGTGCTGTCTTTCTTGGGCCTCATGTCCACGTCGAGGTGTGGCA
AACGTTGGCCGATCTTGGTCCAATACTGTTGTCATGCAGCTACGGCTCTA
TGAAAATGCTACACACTGTCGCCGCCCCTAAGCGCCGCCCGGTTGCTGTA
TTCTTGAACCATAATAGCACTGTTGTCCAGTGGTAGTAGTGGTAGCGGTG
GTCCTTTCTGTCCGTACTTGGTGTCTGTCGCTAATAGCACTGTACCGTGG
TGGTATTAGTAGTAGTAACGGTGCCCTTTGCTATTCGTAGTTACCACGCG
ACAATATTAGTGGAAGCAGTAGCAGTGGTCGGTGCTATTCGTAGTTGTAA
CGCGACGACACTACCGGTGGTCCTTAGTGGTGCTTCATGGTCCTTAACGG
TCGTAGATGTGACGCGACAACGGAGGTAGTAGCAGCAGTGGTCCTTATTG
TGCGTACTGTTGTAACGCGCGACAAAAAGCATTGGCGCTTAGTTAAAATA
GCTCGTTTTTCTGACAGGGTGTATATGCGTCTTCCCTGTTTACTACTCCG
TATTGTGGTTTGTGTACACTCCGCACTATCATCCATGATCACAGCTATGT
ATGAGTGCCATCGTATCTACCAATTTTGACTGATTGTTTAAAGTGTGGAA
GAGGTGTGCTTCGAGTTCTCCTGCCAAAGACAGACCTAAAGAACTTTTTT
TTTAAATTTATTACTTGATTTACCAACCATTGTCCTCCGGTGGATGGGTG
CATATTCAGGCTTAAGCTCCCAATCCTTCGCGGCCAATATGTACTGGTGG
CATATATTCGATAAGACGCGCAACCGTCGACTCGCGGTTTTCAACTCTGT
ATTTGACGCCGTGTGCTCGCCTACTCCGACTCCACGTGTATGGCCGACCC
CCGTCCTCCGTCACCCAGGCATGACTTAATGTCTCCAGCAAACCCGAAGA
AGTACGACGATGGGGCACGAACACCACGAGGTAACTCTCCCTACCCTGGC
CTAATGCCTTCTTGCTCTTGGAACTCCTATATTTCCTGCGTCCCGTCACC
CCCCCAAAAAAGTGCGTTTTTTCACGCTCAATCGCGACGCTGCCGTCGAG
CTTCAAGTATGCTACAGTAGTAGTACACTGTAGTTTGCCTGCGACACGGG
CTAGGAATGACGACGCCAAATATCGCGCCTAAAACGTTAAAATATACCAA
GGTTTTCGTACTTCATGAAGAGTTGTATGATCTATTTATTAGGGGCTACC
GTCATAGTGTATTGTATGGGACCCAAAATTTATAATAAAAAAAAACAGTT
GGGGGGGGGGGCATTATTTTTTTTGTCCCCCTACGAAGTTTGTTTTCTCC
CATCGTTGTAATAATGTAATGTACCCATCGGGTCGAAATCCCTGTGCCCG
TGCTTCTGTCTGCCTCCCGATTACCCCCCCCCCCCCTCCTCCTCCGCCTG
CACCGTTTTGTGCAAACGCCTTCCGCCTCATAGGGAGGGGTGGCGATGTT
AGTGCCGCCATGCTTCGGATGACGGGCAGGGTGACGGTGAAAGGGAACGG
G
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig11:912666..916416-

>mRNA_D-herbacea_F_contig11.852.1 ID=mRNA_D-herbacea_F_contig11.852.1|Name=mRNA_D-herbacea_F_contig11.852.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=942bp|location=Sequence derived from alignment at D-herbacea_F_contig11:912666..916416- (Desmarestia herbacea DmunF female)
ATGGACTCCTTCGGTCGAGGATTCCGGTCGTACCACCTGGCAGTTGCCAA
CAACGCCCTGTTGGTGTGGTACGTGCGCAGGCGTTTCTCGGAGTTCCTAG
CCCTGCATGTGGCGTTGGTGAAGGGCGGGGATGGTGCTAGTGGTGCCGGT
GGGGACATCCCTGTGAACAGATGGACTCCTTCGGTCGAGGATTCCGGTCG
TACCACCTGGCAGTTGCCAACAACGCCCTGTTGGTGTGGTACGTGCGCAG
GCGTTTCTCGGAGTTCCTAGCCCTGCATGTGGCGTTGGTGAAGGGCGGGG
ATGGTGCTAGTGGTGCCGGTGGGGACATCCCTGTGAACAGACTGCCGAAA
CCGCCGACGCGAACGTTCGGAATGATGGTGATATTGCCGGAGAGGATGGA
ACGGATGAGAAGAGGTCAGATGGACGTCTACATGCAGACTGCCGAAACCG
CCGACGCGAACGTTCGGAATGATGGTGATATTGCCGGAGAGGATGGAACG
GATGAGAAGAGGTCAGATGGACGTCTACATGCAGGAACTGTTGGCGATTC
CCGAGGCTTCGACGAACAAGCTGGTGCTGTCTTTCTTGGGCCTCATGTCC
ACGTCGAGGAACTGTTGGCGATTCCCGAGGCTTCGACGAACAAGCTGGTG
CTGTCTTTCTTGGGCCTCATGTCCACGTCGAGGCATGACTTAATGTCTCC
AGCAAACCCGAAGAAGTACGACGATGGGGCACGAACACCACGAGGCATGA
CTTAATGTCTCCAGCAAACCCGAAGAAGTACGACGATGGGGCACGAACAC
CACGAGGGAGGGGTGGCGATGTTAGTGCCGCCATGCTTCGGATGACGGGC
AGGGTGACGGTGAAAGGGAACGGGGGAGGGGTGGCGATGTTAGTGCCGCC
ATGCTTCGGATGACGGGCAGGGTGACGGTGAAAGGGAACGGG
back to top