mRNA_D-herbacea_F_contig11.847.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig11.847.1 vs. uniprot
Match: B5LWM1_9PHYC (Putative ubiquitin ligase n=2 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM1_9PHYC) HSP 1 Score: 369 bits (948), Expect = 2.380e-115 Identity = 250/685 (36.50%), Postives = 368/685 (53.72%), Query Frame = 1
Query: 13 SSSLGDLLGEVVGRGENTAERAFMGRLDTIVEVDVEF-----GNESTSRVDQLRLTLDSSQLLSFQISAVCNIVYRPSFIHVSKTVAR------RRYRQSHTDFIPPLEHSLNEVIHFSGDTDIGATAINDLLPGSGKTLVTMLASIYFSVNRCNEVVRRLDILIREQRSNNWSSGMGF-GSSTRQFTNSVVVMVPKHLASQWERAACDAYAILGMKSAEIHRNP----NKRVLESLSEN-VSVFLFTSVSALRICFPEDDGFVPCIVVDEYVHRAEHNILTTSAEMTPVYGRIVLVSSDSGDTAHIVSGSRRSSLIRKVTCYGSNDGDSLKDDVMFSARLLSCGVLSSRGRKEVVDFMVEGLKDVSVEKYTILYKTQT--RVTGNVVYSEPEYLEVLGISDTQSVRTLGDLRSRTNDALWDSMDDTTRPSLSTLLQRIDNFLLD--MGNCSVCLDAFSREEEVCLLGPCWHIVCKRCMKLCLSKRNSCPLCREIICGVTDALPVQETSREILVSSTTFCTTFNDFLMGYLPSNGR----VLDSCAAVVASLSTE-AASTGLLVVTETVNFSICLKKSLSTIPLGGVTVAVKEATCAPRKRKMHSVVGGHIQWFKQSGG--EHVKVLCAHESNDMG-LVGVDLSGVNAICYMGKSPLSVRRLGLVARIPRVLGKGH-MFRIFNLV 1977
S+ LGD L + +F D + +V VEF + +T R D + QLL +Q+ A+ NIV+RPS I + K V R R R ++ + + DIG T +NDL+ GSGKT+VT+LA++ F++ R EV RLD+L+REQRSNNWS+ + RQ+ N ++VMV + QWERA A +L +K EI RNP N +S S + V LFT+ AL F D GFVPC+++DEYV +A HN +T + TP+YGR++LVS+D+ TA V SRR SLIR V + D LK+DV S L++C +LSS R+ +++EGL V +EK+ I KT TG + S E L LG++ +++ T+GD R+R D ++ ++S L + ++ F+ + C VCL F+ ++EVC++GPCWH+ CK C L + +CPLCR I G D LP S L + F +F D L Y+ + G + SC A+V SL++E A++ +L+++ F+ L LS++ V + C R H ++WF+ E VK+LC +E D LVG+DL V+AIC +G S + RRLG VARIP+ G+G + R+F+L+
Sbjct: 7 STRLGDELCRKIRSDSQGLTCSFNRSTDDVQDVCVEFVYNSGSSRATHRQDLISRIKAMQQLLPYQVEAITNIVFRPSNISLKKQVVRVSREGPSRTRSDRFTYMGEVSFDAS---------DIGVTVVNDLITGSGKTIVTVLAALLFALERGQEVESRLDLLLREQRSNNWSTRLHCEDGGLRQYENKIIVMVSDEVVKQWERAVSQACYMLDLKGVEIRRNPKGFQNAFFPDSPSSTGLEVLLFTTSRALHEYFGGDKGFVPCVIIDEYVAKAPHNTVTRKKKETPIYGRLILVSADAAKTAEAVWNSRRDSLIRSVVLTDEVEKDGLKNDVKLSMSLMACSILSSHERELCFRYIIEGLNTVELEKFNIPLKTSVWGNFTGTKLNSF-ENLRRLGLTQLETILTMGDFRARIEDV------GSSSGTISHLSKCVNRFIGEGMRTECPVCLQHFAPDKEVCIVGPCWHVFCKDCSTSWLQQGANCPLCRCDITGALDVLPRASKSPVQLKPLSQF-RSFEDTLSTYMDTIGMFPLDAISSCGAIVGSLASERGAASKMLIISPMPEFATQLATYLSSLDCISVR-QLHTDRCVRRPSHSHPSYEQQLEWFRADNHPREKVKILCTYELIDQTKLVGIDLHEVDAICSIG-SLVDGRRLGRVARIPKFRGQGSKVLRLFSLI 672
BLAST of mRNA_D-herbacea_F_contig11.847.1 vs. uniprot
Match: Q6XLW4_9PHYC (FirrV-1-D5 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLW4_9PHYC) HSP 1 Score: 281 bits (718), Expect = 4.540e-81 Identity = 222/733 (30.29%), Postives = 357/733 (48.70%), Query Frame = 1
Query: 1 MEFVSSSLGDLLGEVVGRGENTAERAFMGRLDTIVEVDVEFGNESTS------RVD-QLRLTLDSSQLLSFQISAVCNIVYRPSFIHVSKTVARRRYRQSHTDFIPPLEHSLNEVIHFS-GDTDIGATAINDLLPGSGKTLVTMLASIYFSVNRCNEVVRRLDILIREQRSNNWSSGMGFGS-STRQFTNSVVVMVPKHLASQWERAACDAYAILGMKSAEIHRNPNKRV-----LESLSENVS-------VFLFTSVSALRICFPEDDGFVPCIVVDEYVHRAEHNILTTSAEMTPVYGRIVLVSSDSGDTAHIVSGSRRSSLIRKVTCYGSNDGDS---LKDDVMFSARLLSCGVLSSRGRKEVVDFMVEGLKDVSVEKYTILYKTQTRVT--GNVVYSEPEYLEVLGISDTQSVRTLGDLRSRTNDALWD---SMDDTTRPSLSTLLQRIDNFLLDMGN---CSVCLDAFSREEEVCLLGPCWHIVCKRCMKLCLSKRNSCPLCREIICGVTDALPVQETSRE--ILVSSTTFCTTFNDFLMGYLPSNGRVLDSCAAVVASLSTEAAS-------TGLLVVTETVNFSICLKKSLSTIPLGGVTVA-VKEATCAPRKRKMHSVVGGHIQWFKQSGGEH-------------------------VKVLCAHESND-------MGLVGVDLSGVNAICYMGKSPLSVRRLGLVARIPRVLGKGHM-FRIFNL 1974
+ F + L D L + G R+F D + E V+F S + R D + L +L FQI AV N VYRP I K V R + Q H + P E + GD+DIG T +ND++ GSG+ L TMLA++ F++ R ++V +L+REQR NW+S + S +Q+ NSVV +V + QW+ AA A +ILG++ EI RNP V + S N S + F + + L + D GFVPC+VVDE+ HRA HN +T S E P+YGR++LVSS++ +++GSRR SLIR + + LK DV S + C ++ + RK F+ + + ++++E++ + ++ T G ++ L+ +G+ DT S+ T+GDL+ A D S+ L+ L R+D ++ + GN C++CL EEVC++G CWHI CK+C+ L + ++CP+CR++I G+ D + E S + +L +F +TF + ++ V+ +C+AV+ASL++ ++S T +LV++ + LKK++ + GV + + C R + + H+ W +G VKVL S + L G+D V+AIC + + L+ L + ++P L H RIF+L
Sbjct: 4 VSFRKTKLSDELYFLGNTGATDVSRSFEWGTD-VTEAWVQFNTSSENDPRAKERQDLEEELKTRCDKLKDFQIEAVANAVYRPWNIMGKKKVVRTK--QQHA--VRPREERFTYMADIEMGDSDIGTTVVNDMVCGSGQILTTMLAALVFALRRGDDVRNHKSLLLREQRVMNWASRVSTASLGKKQYHNSVVFLVSERSTRQWQEAAIQACSILGLRGIEIRRNPVISVSPFFPFDEQSVNSSNRRRDLEIHFFNTSTGLTRYYAGDVGFVPCVVVDEFTHRAPHNPVTRSREEIPLYGRLILVSSNAAKIDGLITGSRRESLIRAIAYVPPQQQQAKNLLKSDVKMSMAFMLCSIVPTGSRKAADSFVCDMVGNITLERFDVKLESSAWATYMGGQSFNSFTTLKRVGLKDTMSMLTIGDLKECVEVARTDGRLSLSPHHAERLNVLHDRLDQYVSE-GNGFECAICLRRVPLVEEVCVVGTCWHIFCKKCLGTWLLEHDNCPMCRDMIYGIADLMSSPEPSSDFQVLPRKESFESTFRSYFEN-THTHANVIRACSAVIASLASFSSSSSRSRTPTRVLVLSAVSDMYASLKKNVRN--MNGVNMQELNVLHCGARVPR--ASFEEHVDWLGSNGSVXXXXXXXXXXXXXXXXXXXXXXSDSLVKVLYISVSRNPLSDGASQALAGIDFHDVDAICNV-QFRLTSHHLQYITKVPSFLETTHKTLRIFDL 724
BLAST of mRNA_D-herbacea_F_contig11.847.1 vs. uniprot
Match: Q8QNB5_ESV1K (EsV-1-172 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB5_ESV1K) HSP 1 Score: 238 bits (606), Expect = 1.480e-64 Identity = 204/711 (28.69%), Postives = 333/711 (46.84%), Query Frame = 1
Query: 1 MEFVSSSLGDLLGEVVGRGENTAERAFMGRL-----DTIVEVDVEFGNESTSRVDQLRLTLDSSQ-------LLSFQISAVCNIVYRPSFIHVSKTVARRR----YRQSHTDFIPPLEHSLNEVIHFSGDTDIGATAINDLLPGSGKTLVTMLASIYFSVNRCNEVVRRLDILIREQRSNNWSSGMGFGSSTRQ---------FTNSVVVMVPKHLASQWERAACDAYAILGMKSAEIHRNPNKRVLESLSENVSVFLFTSVSALRICFPEDDGFVPCIVVDEYVHRAEHNILTTSAEMTPVYGRIVLVSSDSGDTAHIVSGSRRSSLIRKVTCYGSNDGDSLKDDVMFSAR----------LLSCGVLSSRGRKEVVDFMVEGLKDVSVEKYTILYKTQ--TRVTGN-----VVYSEPEYLEVLGIS--DTQSVRTLGDLRSRTNDAL--WDSMDDTTRPSLSTLLQRIDNFLLDMGNCSVCLDAFSREEEVCLLGPCWHIVCKRCMKLCLS-KRNSCPLCREIICGVTDAL---------PVQETSREILVSSTTFCTTFNDFLMGYLPSNG---RVLDSCAAVVASLSTEAASTGLLVVTET--VNFSICLKKSLSTIPLGGV---TVAVKEATCAPRKRKMHSVVGGHIQWFKQSGGEHVKVLCAHESNDMGLVGVDLSGVNAICYMGKSPLSVRRLGLVARIPRVL 1941
+ + SSLGD + ++ +N ++F + D V V FG + + TL S + LL FQ+ AV N+ +RP V+KT+ R R + Q+HT E + + S D DIG AINDL GSGKTL T+L +I F+ R E+ R+ L+REQ NWS+ + S +TN +VVM KHL SQW+ A A +LGM+ ++ NP ++ + + L S + L E FVP IVVDE+ ++ N+LT AE+ P++GR++LVS+D+G+ I+ GS R S +RK+ + DD+ + L+S VL + R V + M+ L++V EKYT+ Y +R+ GN V E GI+ T+S+ + + S T D L D+ T P L+ L +I F+ + NC +CL+ + + L+ PCWHIVC +C++ ++ K ++CPLCR + G T A+ + V +++ + + P+ G +D+ + A + + ++V E F+ +++ ++ +G + T+ K RK +V + F + G +K+L E L G+D V+ I +G S++RLG + R+PR++
Sbjct: 107 VSIMVSSLGDQMAAMIRANDNGIHKSFTRSVGGPPNDPHGGVMVRFGGGDHPQKHSVSQTLCSFRGSTNIKFLLPFQVQAVLNMAFRPRNTFVAKTIFRTRNYGRHEQNHT------ETQVGTNVLKSFDDDIGMMAINDLYTGSGKTLTTILGAIVFADKRRAEIGARVPFLMREQVHGNWSTRVQCSLSKEHQRPPNNFPSYTNVIVVMCAKHLFSQWKSACASALHVLGMEGVQVLENPLPGSIQLSDVGLKIVLLHSATNLARLELE---FVPVIVVDEFTIKSASNVLTKPAEIMPLHGRMILVSADAGNVKDIIHGSNRRSFLRKMLQW---------DDISYFPEAHIAMVAGIPLISASVLQTTDRYAVGELMINKLREVGYEKYTVRYTPSFASRIFGNNFEMSAVSGSRLISERFGINLTGTKSIGQVLRIVSNTIDNLRTTDANSRTIAP-LTDLKNKISAFVGEKENCPICLEEYEMDSGASLINPCWHIVCDKCLRAMMAVKHDTCPLCRVKMEGHTTAVIDDRIGVASDASSRGQNTRVETSSRLSLLQNMDAVLRPTAGLEKACVDTLRCIKADVGDQPYKIVMIVPDEHFFTKFANDVREEMTASQIGIIEFKTIGNK------RKHVTGKMVSDQLASFASNRGPPMKILFTTEGKTDSLTGLDFPRVDCILSLGDGN-SLQRLGRLTRLPRMM 791
BLAST of mRNA_D-herbacea_F_contig11.847.1 vs. uniprot
Match: D8LPJ1_ECTSI (EsV-1-172 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ1_ECTSI) HSP 1 Score: 234 bits (596), Expect = 1.260e-63 Identity = 201/712 (28.23%), Postives = 332/712 (46.63%), Query Frame = 1
Query: 1 MEFVSSSLGDLLGEVVGRGENTAERAFMGRL-----DTIVEVDVEFGNESTSRVDQLRLTLDSSQ-------LLSFQISAVCNIVYRPSFIHVSKTVARR----RYRQSHTDFIPPLEHSLNEVIHFSGDTDIGATAINDLLPGSGKTLVTMLASIYFSVNRCNEVVRRLDILIREQRSNNWSSGMGFGSSTRQ---------FTNSVVVMVPKHLASQWERAACDAYAILGMKSAEIHRNPNKRVLESLSENVSVFLFTSVSALRICFPEDDGFVPCIVVDEYVHRAEHNILTTSAEMTPVYGRIVLVSSDSGDTAHIVSGSRRSSLIRKVTCYGSNDGDSLKDDVMFSAR----------LLSCGVLSSRGRKEVVDFMVEGLKDVSVEKYTILYKTQ--TRVTGN-----VVYSEPEYLEVLGISDTQSVRTLGDLRSRTNDALWDSMDDTTRPS-----LSTLLQRIDNFLLDMGNCSVCLDAFSREEEVCLLGPCWHIVCKRCMKLCLS-KRNSCPLCREIICGVTDALPVQETS---------REILVSSTTFCTTFNDFLMGYLPSNG---RVLDSCAAVVASLSTEAASTGLLVVTET--VNFSICLKKSLSTIPLGGV---TVAVKEATCAPRKRKMHSVVGGHIQWFKQSGGEHVKVLCAHESNDMGLVGVDLSGVNAICYMGKSPLSVRRLGLVARIPRVL 1941
+ + SSLGD + ++ +N ++F + D V V FG + + L S + LL FQI A+ N+ +RPS V+KT+ R R Q+ T E + + S D DIG AINDL GSGKTL T+L +I F+ R E+ R+ L+REQ NWS+ + S +TN +VVM KHL SQW+ A A ILGM+ ++ NP E + ++ V L S + L D FVP IVVDE+ ++ N+LT AE P++GR++LVS+D+G+ ++ GS R S +RK+ + DD+ + L+S VL + R V + M+ L++V EKYT+ Y +R+ G+ V E GI D +T+G + ++ + D++ T S L+ L +I F+ + +C +CL+ + + L+ PCWHIVC +C++ ++ K ++CPLCR + G T A+ ++S + + + + + + P+ G +D+ + A + + ++V E F+I +++ ++ +G + T+ K RK +V + F G +K+L E L G+D V+ I +G S++RLG + R+PR++
Sbjct: 35 VSIMVSSLGDQMEAMIRAKDNGIHKSFTSSVRGPPTDPHGGVMVRFGGRDHPKKHAVSQALCSFRGSTNIKFLLPFQIQAILNMAFRPSHTFVAKTILRTSTYGRQEQNRT------ETQVGTSVLKSFDDDIGMMAINDLYTGSGKTLTTVLGAIVFADKRRAEIGARVPFLMREQVHGNWSTRVQCALSKEHQRSPNTFPTYTNVIVVMCAKHLLSQWKSACASALHILGMEEVQVLENPLPGSTELSNASLKVLLLHSAANLTRL---DLEFVPVIVVDEFTIKSTSNVLTKPAETMPLHGRMILVSADAGNVRDMIHGSNRRSFLRKMLQW---------DDISYFPEAHIAMVAGIPLISASVLQTTDRYAVGELMINKLREVGYEKYTVRYTPSFASRIFGSNFEMSAVSGSRLIRERFGI-DLAGTKTIGQVLRIVSNTI-DNLRTTDANSRAIAPLTDLRNKISAFVGEKEDCPICLEEYEMDSGASLINPCWHIVCDKCLRAMMAVKHDTCPLCRVKMEGHTTAVIDDQSSVASGASSPGQNTRIETNSRLSLLQNMEAVLRPTAGLEKACIDTLRCIKADVGDQPYKIVMIVPDEHFFTKFAIDVREEMTASQIGIIEFKTIGNK------RKHVTGKMVCDQLASFASDRGPPLKILFTTEGKTDSLTGLDFPRVDCILSLGDGN-SLQRLGRLTRLPRMM 719 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig11.847.1 >prot_D-herbacea_F_contig11.847.1 ID=prot_D-herbacea_F_contig11.847.1|Name=mRNA_D-herbacea_F_contig11.847.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=661bp MEFVSSSLGDLLGEVVGRGENTAERAFMGRLDTIVEVDVEFGNESTSRVDback to top mRNA from alignment at D-herbacea_F_contig11:836153..838135- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig11.847.1 ID=mRNA_D-herbacea_F_contig11.847.1|Name=mRNA_D-herbacea_F_contig11.847.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1983bp|location=Sequence derived from alignment at D-herbacea_F_contig11:836153..838135- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig11:836153..838135- >mRNA_D-herbacea_F_contig11.847.1 ID=mRNA_D-herbacea_F_contig11.847.1|Name=mRNA_D-herbacea_F_contig11.847.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3966bp|location=Sequence derived from alignment at D-herbacea_F_contig11:836153..838135- (Desmarestia herbacea DmunF female)back to top |