mRNA_D-herbacea_F_contig11.845.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.845.1
Unique NamemRNA_D-herbacea_F_contig11.845.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: B5LWG6_9PHYC (Putative oligoribonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG6_9PHYC)

HSP 1 Score: 284 bits (727), Expect = 1.010e-93
Identity = 128/237 (54.01%), Postives = 173/237 (73.00%), Query Frame = 1
Query:    1 MTEESVVPSRKRISSNYDRYNPWFWVDMETTGLDPDTSEILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKSPHR-RVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKF 708
            M E     ++K  +  YDR NPWFW+D+ET+ LD  TS++LE+ +VVT++ L  WDS+H+V+HHP+NILM+KSS+WCK KF S S+GGNGLF++CH+S T+  DA  ++  FFEYYS+ E+G GRP     +FFD+T   NG  L+ YD+SC         R + LLAGSTV+FDRR +  HFP L+++LSHKNVDVT+LLETAKRF  D++  KP+P+  HRA DDI+DS+ LYK+
Sbjct:    1 MAEAHYGRTKKVFNRGYDRNNPWFWIDIETSSLDFSTSDVLEIAIVVTDSGLNVWDSLHVVIHHPINILMLKSSNWCKEKFCSRSYGGNGLFDDCHYSNTSITDATHLMLNFFEYYSTHEIGRGRPAHKSRTFFDRTSGANGMKLSPYDISCQVQNFTGTRRSQGLLAGSTVYFDRRIIEKHFPVLRKYLSHKNVDVTSLLETAKRFHPDLIENKPKPTMVHRAMDDILDSLTLYKY 237          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC)

HSP 1 Score: 269 bits (687), Expect = 8.010e-88
Identity = 125/232 (53.88%), Postives = 171/232 (73.71%), Query Frame = 1
Query:   40 SSNYDRYNPWFWVDMETTGLDPDTSEILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIG--RPERNDLSFFDKTMDTNGANL-----TSYDV--SCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKF 708
            +  Y+RYNPWFW+DMET+ LD   SE+LEV +VVT+  L  WDS+H+V+HHP+NILM+KSS+WCK++F S+ +GGNGLF+ECH+S+T+ ADA   + +FFEYY + ++G G  RP  ++ SFFD+T  TNG  L     T  D+   CT     S  ++ LL GSTV+FDRR + THFP L+++LSHKN+DVTT+LETAKRF  D++  KP+P   HRA DDI+DS+ LY++
Sbjct:    3 NKTYERYNPWFWIDMETSSLDFSQSEVLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCTHRDIPKQCTTTPGGSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 5.850e-70
Identity = 115/236 (48.73%), Postives = 159/236 (67.37%), Query Frame = 1
Query:   31 KRISSNYDRYNPWFWVDMETTGLDPDTSEILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLS----FFDKTMDTNGANLTSYDVSCTAYTS---KSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKE 717
            K    +Y+   PWFW+DMETTGLD DT+ ILE+ +VVT+  L   DS+ +VLHHP +IL+ +SS+WC+RKF     GGNGLFE CHFS  +H +A   +W FF++YS ++VG GR +   ++    FFD+T+  NG  L + D S   +     +S +++ LLAGSTV+FDR FL+ +FP LK F  ++ VDV+T LE  +R+  D+ AK PR + +HRA DDI+DSI L KFFKE
Sbjct:   31 KTSKHDYENEFPWFWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYS-KDVG-GRYDTTQITSSQPFFDRTLGANGTFLGASDASRCRHQQQPRRSNYKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKE 264          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.400e-31
Identity = 77/246 (31.30%), Postives = 122/246 (49.59%), Query Frame = 1
Query:   67 WFWVDMETTGLDPDTSE--ILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYS---------SQEVGIGRPERN--DLSFFDKTMDTNGANLTSYDVSCT-------AYTSKSPHR------RVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLF 726
            W W D+E TGLDP +    +LE+   VT   L   D+ H+++H P  +L   +SSWC   F     GGN LF++C  S  + A+A  +L  F   ++         + EV     +RN    + F   ++   A     +   T       AY    P        RV+ AG + +FDR  ++  FP+L+++++HK +DVT++LE  +R+  D+L   P P  THRA  D+++SI L ++    LF
Sbjct:   22 WIWCDIECTGLDPTSPGFGVLEIAAAVTGDDLTVQDTFHVIIHQPDRVL-AGASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEVPEAVVKRNVFKTAEFGDVIEDGDAMAGDIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRWVMTNLF 266          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.450e-30
Identity = 71/230 (30.87%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   67 WFWVDMETTGLDPDTSE--ILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKS-------------PHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFF 711
            W ++D+E T LD       ILE+   + +  +E  D+ H++++ P +I+   +S WCK++F S   GGN LF +C  S  T A A  ML +F   ++ +             FF        A L + D +    TS++              H RV+LAG +V+FDR  L+  +P L+  + HK +++++LLE A+++  DILA  P     HRA  D+++S+ L ++F
Sbjct:    9 WLFLDIECTQLDYQAHNFGILEIAAAIVDNSMEVIDTFHVIVNQPAHIIAA-ASKWCKKRFCSRLEGGNDLFAQCDASIITEAQAGFMLEQFIMKHAKERHMQPDEAEQKRRFFQ------AAELETIDAAIETETSEAFIEKDVEKTQGGISHFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWF 231          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.850e-25
Identity = 72/246 (29.27%), Postives = 110/246 (44.72%), Query Frame = 1
Query:   67 WFWVDMETTGLDPDTSE--ILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQ------------EVGIGRPERNDLSFFDKTMD--------TNGANLTSYDVSCTAYTSKSPHR----RVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLF 726
            W W D+E TGLDP      ILE+   +T   L   D+ H+V+H P  +L   +S WC   F     GGN LFE+   S  + + A  ML  F   ++              E    R       F D   +        T GA                  +    RV+ AG + +FDR  ++  FP+L+++++HK +DVT++LE  +R+  D+L   P P   HRA  D+++S+ L ++    LF
Sbjct:   33 WLWCDIECTGLDPAAPGFGILEIAAAITGDDLTVQDTFHVVVHQPPRVL-AGASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEGPEAACKRSMFKTAEFGDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRWVMTNLF 277          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A0C2D1B7_9DELT (Oligoribonuclease n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2D1B7_9DELT)

HSP 1 Score: 99.8 bits (247), Expect = 2.890e-22
Identity = 73/228 (32.02%), Postives = 106/228 (46.49%), Query Frame = 1
Query:   52 DRYNPWFWVDMETTGLDPDTSEILEVNVVVTNTRLEPW-DSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDI--LAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLF 726
            D + P  W+DME TGLDPDT ++LE+  ++TN  LE   +   +V+H P  +L      WC        HG +GL E    S  T  +A                     ER  L+F                       +  P  +  L G+T+  DRRFLV H P L+RF  +++VDVTTL E  +R+   +  +AK    + THRA DDI +SI   ++++E +F
Sbjct:    3 DPHPPLIWIDMEMTGLDPDTEKVLEIATLITNADLELIAEGPELVIHQPDEVLDAMGE-WCVEH-----HGASGLTELARASTLTVEEA---------------------ERQTLAFVQ---------------------AHCPPGQSPLCGNTIGQDRRFLVRHMPALERFFHYRSVDVTTLKELCQRWYPTLPGIAK----AETHRALDDIRESIAELRYYREHMF 178          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A661MVW6_9DELT (Oligoribonuclease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661MVW6_9DELT)

HSP 1 Score: 94.7 bits (234), Expect = 3.320e-20
Identity = 60/219 (27.40%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   73 WVDMETTGLDPDTSEILEVNVVVTNTRLEPW-DSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLF 726
            W+DME +GL+P+T  ILEV V+VT+  L+   +  ++VLH P  +L          ++++  HG +GL +    S    A A+  L  F   ++ +                                          R+  LAG+++H DRRF+  + P+++ +L ++NVDV+T+ E A+R+     + +P    +HRA DD+++SI+  K++++ LF
Sbjct:   27 WMDMEMSGLEPETERILEVAVLVTDGELKVVAEGPNLVLHQPDAVLEAMD------EWNTSHHGQSGLTKRVRESTIDEAQASAALLAFLAEHTKK------------------------------------------RKAPLAGNSIHQDRRFVARYLPEVEDWLHYRNVDVSTIKELAQRWYPKRYSGRPTKKGSHRAMDDLLESIEELKYYRKALF 197          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A7Y3BUH1_9DELT (Oligoribonuclease n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y3BUH1_9DELT)

HSP 1 Score: 93.2 bits (230), Expect = 7.800e-20
Identity = 59/219 (26.94%), Postives = 110/219 (50.23%), Query Frame = 1
Query:   73 WVDMETTGLDPDTSEILEVNVVVTNTRLEPW-DSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLF 726
            W+DME +GL+P+T  +LEV V++T+  L    +  ++VL+   ++L    +      +++  HG +GL +    S  +   A+  L  FF  ++ +                                     +K+P     LAG+++H DRRFL  + P+++ +L ++NVDV+T+ E A+R+     A +P    +HRA DD+++SI+  K++++ LF
Sbjct:    6 WMDMEMSGLEPETDRVLEVAVLITDGELNVVAEGPNLVLNQSEDVLSAMDA------WNTSHHGQSGLTQRVRESTLSEEQASAALLGFFSEHTQK-------------------------------------NKAP-----LAGNSIHQDRRFLARYLPEVEDWLHYRNVDVSTIKELARRWYPKQYAGRPTKKGSHRAMDDLMESIEELKYYRKALF 176          
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Match: A0A410FU17_9BACT (3'-to-5' oligoribonuclease (Orn) n=1 Tax=Candidatus Bipolaricaulis sibiricus TaxID=2501609 RepID=A0A410FU17_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.570e-19
Identity = 66/221 (29.86%), Postives = 103/221 (46.61%), Query Frame = 1
Query:   73 WVDMETTGLDPDTSEILEVNVVVTNTRLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKTTHADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDVSCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLLETAKRFGSDILAKKPRPSST---HRAKDDIIDSIKLYKFFKEKLF 726
            W+D+ETTGLDP+TS ILE+  V+T+  L       +V+HHP N  +V    W + +     H  +GL +E   S                      VG+ + E   L                         ++ P R   LAGS+V FDRRFL+ H P L+  LS++ +DV++L E  +R+       K  P+ +   HRA  DI++SI+  + ++ ++F
Sbjct:    2 WIDLETTGLDPETSVILEIAAVITDKHLNVLSQESLVIHHP-NDALVGLDEWVQTQ-----HQASGLLDEVRRSA---------------------VGLTQAEERVLGLV---------------------AARCPPRACPLAGSSVCFDRRFLMRHMPKLEAHLSYRQIDVSSLKELVRRW----YPHKAPPNGSEAKHRALPDILESIEELRRYRAEVF 170          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG6_9PHYC1.010e-9354.01Putative oligoribonuclease n=1 Tax=Feldmannia spec... [more]
Q6XM84_9PHYC8.010e-8853.88FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a ... [more]
D8LPG5_ECTSI5.850e-7048.73EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
A0A836CDV0_9STRA1.400e-3131.30Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z4U2_9STRA1.450e-3030.87Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A835YX31_9STRA1.850e-2529.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0C2D1B7_9DELT2.890e-2232.02Oligoribonuclease n=1 Tax=Enhygromyxa salina TaxID... [more]
A0A661MVW6_9DELT3.320e-2027.40Oligoribonuclease n=1 Tax=Deltaproteobacteria bact... [more]
A0A7Y3BUH1_9DELT7.800e-2026.94Oligoribonuclease n=2 Tax=Deltaproteobacteria TaxI... [more]
A0A410FU17_9BACT1.570e-1929.863'-to-5' oligoribonuclease (Orn) n=1 Tax=Candidatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:833897..834634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue4e-56
Seed eggNOG ortholog2880.D8LPG5
Preferred nameREXO2
KEGG rclassRC00408
KEGG koko:K01179,ko:K01835,ko:K13288
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
EggNOG free text desc.RNA phosphodiester bond hydrolysis, exonucleolytic
EggNOG OGsCOG1949@1,KOG3242@2759
EC3.2.1.4,5.4.2.2
COG Functional cat.A
CAZyGH5,GH9
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Exons1
Model size738
Cds size738
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.3812146-CDS-D-herbacea_F_contig11:833896..8346341622927506.3812146-CDS-D-herbacea_F_contig11:833896..834634Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 833897..834634 +
1690790206.176851-CDS-D-herbacea_F_contig11:833896..8346341690790206.176851-CDS-D-herbacea_F_contig11:833896..834634Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 833897..834634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.845.1prot_D-herbacea_F_contig11.845.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 833897..834634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.845.1

>prot_D-herbacea_F_contig11.845.1 ID=prot_D-herbacea_F_contig11.845.1|Name=mRNA_D-herbacea_F_contig11.845.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=246bp
MTEESVVPSRKRISSNYDRYNPWFWVDMETTGLDPDTSEILEVNVVVTNT
RLEPWDSIHIVLHHPMNILMVKSSSWCKRKFSSISHGGNGLFEECHFSKT
THADANIMLWKFFEYYSSQEVGIGRPERNDLSFFDKTMDTNGANLTSYDV
SCTAYTSKSPHRRVLLAGSTVHFDRRFLVTHFPDLKRFLSHKNVDVTTLL
ETAKRFGSDILAKKPRPSSTHRAKDDIIDSIKLYKFFKEKLFDNA*
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mRNA from alignment at D-herbacea_F_contig11:833897..834634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.845.1 ID=mRNA_D-herbacea_F_contig11.845.1|Name=mRNA_D-herbacea_F_contig11.845.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=738bp|location=Sequence derived from alignment at D-herbacea_F_contig11:833897..834634+ (Desmarestia herbacea DmunF female)
ATGACAGAAGAATCTGTCGTACCGTCTCGGAAGAGAATATCCAGCAATTA CGACAGATATAACCCGTGGTTTTGGGTTGACATGGAGACAACCGGACTGG ACCCTGACACGAGCGAAATATTAGAGGTAAATGTCGTTGTCACCAACACA AGACTTGAACCGTGGGATTCCATACACATCGTACTCCACCACCCAATGAA CATTTTGATGGTGAAATCTTCTTCTTGGTGCAAGCGCAAGTTCTCCTCTA TCTCTCACGGTGGAAACGGACTCTTCGAAGAGTGTCATTTCTCCAAAACG ACGCACGCCGATGCCAATATCATGTTGTGGAAATTCTTCGAATATTACTC GTCGCAAGAAGTGGGCATCGGACGCCCGGAACGGAACGATCTCTCTTTCT TCGACAAGACGATGGACACGAACGGCGCGAACCTTACAAGTTACGATGTC TCCTGCACAGCCTACACGTCAAAGTCTCCTCACAGACGTGTACTTCTAGC TGGGAGTACTGTGCATTTCGACAGGAGATTCCTTGTGACACACTTCCCAG ATCTTAAGCGATTTCTGAGCCACAAGAACGTCGACGTAACGACATTGCTC GAGACGGCGAAACGTTTTGGGTCGGACATTTTGGCCAAAAAGCCAAGGCC TTCTTCGACTCACAGAGCGAAGGACGACATTATCGATTCCATCAAATTAT ACAAATTCTTCAAAGAAAAGCTTTTTGACAATGCGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:833897..834634+

>mRNA_D-herbacea_F_contig11.845.1 ID=mRNA_D-herbacea_F_contig11.845.1|Name=mRNA_D-herbacea_F_contig11.845.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1476bp|location=Sequence derived from alignment at D-herbacea_F_contig11:833897..834634+ (Desmarestia herbacea DmunF female)
ATGACAGAAGAATCTGTCGTACCGTCTCGGAAGAGAATATCCAGCAATTA
CGACAGATATAACCCGTGGTTTTGGGTTGACATGGAGACAACCGGACTGG
ACCCTGACACGAGCGAAATATTAGAGGTAAATGTCGTTGTCACCAACACA
AGACTTGAACCGTGGGATTCCATACACATCGTACTCCACCACCCAATGAA
CATTTTGATGGTGAAATCTTCTTCTTGGTGCAAGCGCAAGTTCTCCTCTA
TCTCTCACGGTGGAAACGGACTCTTCGAAGAGTGTCATTTCTCCAAAACG
ACGCACGCCGATGCCAATATCATGTTGTGGAAATTCTTCGAATATTACTC
GTCGCAAGAAGTGGGCATCGGACGCCCGGAACGGAACGATCTCTCTTTCT
TCGACAAGACGATGGACACGAACGGCGCGAACCTTACAAGTTACGATGTC
TCCTGCACAGCCTACACGTCAAAGTCTCCTCACAGACGTGTACTTCTAGC
TGGGAGTACTGTGCATTTCGACAGGAGATTCCTTGTGACACACTTCCCAG
ATCTTAAGCGATTTCTGAGCCACAAGAACGTCGACGTAACGACATTGCTC
GAGACGGCGAAACGTTTTGGGTCGGACATTTTGGCCAAAAAGCCAAGGCC
TTCTTCGACTCACAGAGCGAAGGACGACATTATCGATTCCATCAAATTAT
ACAAATTCTTCAAAGAAAAGCTTTTTGACAATGCGTAAATGACAGAAGAA
TCTGTCGTACCGTCTCGGAAGAGAATATCCAGCAATTACGACAGATATAA
CCCGTGGTTTTGGGTTGACATGGAGACAACCGGACTGGACCCTGACACGA
GCGAAATATTAGAGGTAAATGTCGTTGTCACCAACACAAGACTTGAACCG
TGGGATTCCATACACATCGTACTCCACCACCCAATGAACATTTTGATGGT
GAAATCTTCTTCTTGGTGCAAGCGCAAGTTCTCCTCTATCTCTCACGGTG
GAAACGGACTCTTCGAAGAGTGTCATTTCTCCAAAACGACGCACGCCGAT
GCCAATATCATGTTGTGGAAATTCTTCGAATATTACTCGTCGCAAGAAGT
GGGCATCGGACGCCCGGAACGGAACGATCTCTCTTTCTTCGACAAGACGA
TGGACACGAACGGCGCGAACCTTACAAGTTACGATGTCTCCTGCACAGCC
TACACGTCAAAGTCTCCTCACAGACGTGTACTTCTAGCTGGGAGTACTGT
GCATTTCGACAGGAGATTCCTTGTGACACACTTCCCAGATCTTAAGCGAT
TTCTGAGCCACAAGAACGTCGACGTAACGACATTGCTCGAGACGGCGAAA
CGTTTTGGGTCGGACATTTTGGCCAAAAAGCCAAGGCCTTCTTCGACTCA
CAGAGCGAAGGACGACATTATCGATTCCATCAAATTATACAAATTCTTCA
AAGAAAAGCTTTTTGACAATGCGTAA
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