mRNA_D-herbacea_F_contig11.844.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.844.1
Unique NamemRNA_D-herbacea_F_contig11.844.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: B5LWG8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG8_9PHYC)

HSP 1 Score: 188 bits (478), Expect = 5.280e-58
Identity = 102/176 (57.95%), Postives = 126/176 (71.59%), Query Frame = 1
Query:   13 PFIGCSTTEGLSRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTL-QTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGKHRRANKSSSHTKSYSGKFKMVF 537
            PF+GC+ +  LS SD++LL SV+ WYN  S RV  FL IV+R NG+SLRVIDWLVTN+ KT  V L + DG PTDL RDYQK LSAYNK+NMDPFARR ++ I +FG +TR ST+GQLNFFRWFLKN +  F+H NK VVE+ MK    R   K R   K+ +  + +SGKF + F
Sbjct:    4 PFLGCTKSADLSDSDQLLLLSVLRWYNTNSKRVSGFLEIVERNNGLSLRVIDWLVTNYCKTTPVMLHRRDGPPTDLYRDYQKYLSAYNKKNMDPFARRKRVTITLFGKKTRKSTLGQLNFFRWFLKNKLEEFMHLNKAVVEDDMKRVADRVSQKKRHRKKAPT-ARVFSGKFLVEF 178          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: Q8QND8_ESV1K (EsV-1-141 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND8_ESV1K)

HSP 1 Score: 179 bits (454), Expect = 5.720e-54
Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query:   46 SRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMK 444
            SR DEVLL+SV+ W+NEE SRV  F  IV  KNG+SLR+IDWL+TNF+K+ +V +++DGLP +L RDY KNLSA+NK+N DPFARR +I I++FG E R ST+GQLNFFRWFL  N+ GFL  NK V+E HMK
Sbjct:   20 SRKDEVLLNSVLMWFNEEESRVQTFSDIVHHKNGLSLRIIDWLITNFTKSFSVAIESDGLPRNLRRDYHKNLSAHNKKNFDPFARRRRIHIVLFGEERRVSTIGQLNFFRWFLSKNLVGFLLENKSVIEKHMK 152          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: D8LPG7_ECTSI (EsV-1-141 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG7_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.580e-52
Identity = 83/136 (61.03%), Postives = 108/136 (79.41%), Query Frame = 1
Query:   46 SRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTE 453
            SR DEVLL+SV+ W+NEE SRV  F  IV  KNG+SLR+IDWL+TNF+++ +V +++DGLP +L RDY KNLSA+NK+N DPFARR +I I++FG+E R ST+GQLNFFRWFL  N+ GFL  NK  +E HMK ++
Sbjct:   26 SRKDEVLLNSVLLWFNEEKSRVQTFSDIVHHKNGLSLRIIDWLITNFTRSFSVAIESDGLPRNLRRDYHKNLSAHNKKNFDPFARRRRIQIVLFGNEERVSTIGQLNFFRWFLSKNLVGFLLENKSAIEKHMKDSD 161          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: Q6XM82_9PHYC (FirrV-1-A5 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM82_9PHYC)

HSP 1 Score: 157 bits (396), Expect = 1.230e-45
Identity = 81/175 (46.29%), Postives = 116/175 (66.29%), Query Frame = 1
Query:   16 FIGC-STTEGLSRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGKHRRANKSSSHTKSYSGKFKMVF 537
            F+ C  +  GL+ S+E+LL SV+ WYN+++ RV   +  ++R   +SLRVIDW VTN+S+   + ++ DGLP DL +DYQKNLS+Y K+ MDPFARR +I I++FG   R ST+GQLNFFRWFL +NI   L   K  VE+ MK +       +R  +K    T S++G+F++ F
Sbjct:    4 FLRCRKSAAGLTTSEELLLSSVLTWYNQDADRVKELMQFIERNKCLSLRVIDWFVTNYSRNTPIMMERDGLPRDLYKDYQKNLSSYKKKYMDPFARRKRITILMFGQTERTSTIGQLNFFRWFLGSNIRQLLDERKQAVEHEMKYSIF-----NRIKSKKKDRTCSFTGRFRVSF 173          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A2P6FTP1_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2P6FTP1_9RHOB)

HSP 1 Score: 97.1 bits (240), Expect = 3.380e-22
Identity = 52/144 (36.11%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   61 VLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGKHRRANKS 492
            +LL+S+++++ E    + + + I++ ++ +SLR+IDW VT FS+   +    +G P  +  +Y+  L AY+KR MDPF RR++I +   GSE   +T+GQ+NFFRW ++N I  +++ N DV+E  MK+   +     R+ N S
Sbjct:   11 LLLNSLLQYF-ENKVNMESLVEILQDRSLVSLRMIDWFVTKFSRVRNLQYDVNGKPFAVYSNYKSQLKAYSKRQMDPFCRRDRIVLRKHGSEL-TTTIGQMNFFRWAIENQILKYIYENYDVLEKEMKSENKQKTNLSRKKNNS 152          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A6C0D379_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D379_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 1.040e-20
Identity = 52/142 (36.62%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   55 DEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPT-DLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSE--TRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGK 471
            +++LL  +M +Y +E +  +  LSI+  ++ +SLR++DW  TN++K N  T   D  P   +  DY+  L AY+KR  DPF R ++I +  FG++  +  +T+GQLNFF+W ++N I  ++  N D++E  M T  + SK K
Sbjct:    7 NDLLLKKLMNYYGDEEN-FNKMLSIINGESKISLRIVDWFSTNYAKKNFTTYDLDTCPRFKIYNDYKLKLKAYSKRRFDPFCRWDRIKV-PFGNKEFSIETTIGQLNFFKWAIENKIIDYIEKNYDIIEEDMNTNNSISKSK 146          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A7C7JFF4_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JFF4_9FLAO)

HSP 1 Score: 93.2 bits (230), Expect = 1.580e-20
Identity = 48/139 (34.53%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   55 DEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGK 471
            +++LL +++++Y E  + + + LSI+  ++ +SLRV+DW  TN+SK N + ++ +G   ++  DY+ NL AY+KR  DPF R ++I I     +   +T+GQLNFFRW +   +  ++  N + +E  M T  + S+ K
Sbjct:   11 NKLLLKTLLDFYRENEA-LDDVLSIINGESPISLRVVDWFATNYSKQNFIVIEHNGKRVNVYTDYKLNLRAYSKRRFDPFCRWDRITIPYKDGKHIQTTIGQLNFFRWAIMRGVIDYIKPNLESIERDMNTRNSTSRRK 148          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A6C0CQ95_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CQ95_9ZZZZ)

HSP 1 Score: 92.0 bits (227), Expect = 3.910e-20
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   55 DEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGKHRRANKS 492
            + +LL++++++YN + + +   LSI+  ++ +SLR++DW  TN++K N    Q       +  DY+  L AY+K+  DPF R  +I I    ++   +T+GQLNFF+W L+NN+  ++  N D +EN M    + SK K    +KS
Sbjct:    9 NSLLLNNLLKFYNRDGN-LKKMLSIINGESKISLRIVDWFATNYAKQNFTIYQVKNKRFKVYVDYKLKLRAYSKKRFDPFCRWERITIPFEDNKYIQTTIGQLNFFKWALENNVIEYIEENYDDIENDMNKRNSTSKRKKHTTSKS 153          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A6C0C0F2_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0C0F2_9ZZZZ)

HSP 1 Score: 91.3 bits (225), Expect = 7.920e-20
Identity = 51/147 (34.69%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   31 TTEGLSRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTTEARSKGK 471
            +T   +  +E+LL S+M +YN +   + + +SI+  +  +SLR+IDW VTN++K   V    +     +  +Y+  L AY+K+  DPF R  +I I         +T+GQLNFFRW L+NNI  ++  N D +E  M +    S+ K
Sbjct:    2 STRYSTTQNELLLSSLMNFYNNKK-HLDSIISIINGEGKISLRIIDWFVTNYAKEKYVVYTLNNNRFKVFHEYKLKLKAYSKKRFDPFCRWERICIPYDDKHNMETTLGQLNFFRWALENNIIKYIEENYDDIEKDMNSRNTNSRKK 147          
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Match: A0A6G6XP86_9PHYC (Uncharacterized protein n=1 Tax=Dishui Lake phycodnavirus 4 TaxID=2704072 RepID=A0A6G6XP86_9PHYC)

HSP 1 Score: 89.7 bits (221), Expect = 9.130e-20
Identity = 45/131 (34.35%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   43 LSRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGMSLRVIDWLVTNFSKTNTVTLQT-DGLPTDLNRDYQKNLSAYNKRNMDPFARRNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVE 432
            +S+S ++LL S+ ++YNE++      L ++  + G+SLR I+W +TN++K+N     T DG    ++  Y+ +L  Y+KR  DPF R  +I  I+   +  ++TV QLNF RW + N+I  ++ +NK +++
Sbjct:    4 ISKSQQLLLHSLSQFYNEKNHS-EQLLDVINHRKGVSLRNIEWFITNYAKSNQTRYNTKDGKDFPVHIQYKASLDGYSKRAFDPFCRTERITFILSSGDEISTTVSQLNFLRWCIVNDIIKYIENNKHILK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWG8_9PHYC5.280e-5857.95Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QND8_ESV1K5.720e-5463.91EsV-1-141 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPG7_ECTSI1.580e-5261.03EsV-1-141 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q6XM82_9PHYC1.230e-4546.29FirrV-1-A5 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A2P6FTP1_9RHOB3.380e-2236.11Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
A0A6C0D379_9ZZZZ1.040e-2036.62Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7C7JFF4_9FLAO1.580e-2034.53Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A6C0CQ95_9ZZZZ3.910e-2034.25Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0C0F2_9ZZZZ7.920e-2034.69Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6G6XP86_9PHYC9.130e-2034.35Uncharacterized protein n=1 Tax=Dishui Lake phycod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:832455..832994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score182.2
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog654926.Q8QND8_ESV1K
Hectar predicted targeting categoryother localisation
EggNOG OGs4QFMQ@10239,4QZ1R@35237
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Exons1
Model size540
Cds size540
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.3444114-CDS-D-herbacea_F_contig11:832454..8329941622927506.3444114-CDS-D-herbacea_F_contig11:832454..832994Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 832455..832994 +
1690790206.1608665-CDS-D-herbacea_F_contig11:832454..8329941690790206.1608665-CDS-D-herbacea_F_contig11:832454..832994Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 832455..832994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.844.1prot_D-herbacea_F_contig11.844.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 832455..832994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.844.1

>prot_D-herbacea_F_contig11.844.1 ID=prot_D-herbacea_F_contig11.844.1|Name=mRNA_D-herbacea_F_contig11.844.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=180bp
MDPFPFIGCSTTEGLSRSDEVLLDSVMEWYNEESSRVHNFLSIVKRKNGM
SLRVIDWLVTNFSKTNTVTLQTDGLPTDLNRDYQKNLSAYNKRNMDPFAR
RNKIAIIVFGSETRNSTVGQLNFFRWFLKNNIGGFLHHNKDVVENHMKTT
EARSKGKHRRANKSSSHTKSYSGKFKMVF*
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mRNA from alignment at D-herbacea_F_contig11:832455..832994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.844.1 ID=mRNA_D-herbacea_F_contig11.844.1|Name=mRNA_D-herbacea_F_contig11.844.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=540bp|location=Sequence derived from alignment at D-herbacea_F_contig11:832455..832994+ (Desmarestia herbacea DmunF female)
ATGGATCCATTTCCGTTCATCGGTTGTTCCACTACAGAAGGTCTTTCACG TTCCGACGAGGTCTTATTGGATTCCGTCATGGAGTGGTACAACGAAGAAT CTTCGCGTGTCCACAACTTTTTGTCGATAGTTAAACGAAAGAACGGTATG AGTCTGAGGGTCATCGATTGGCTCGTCACGAACTTCAGCAAAACAAACAC CGTCACGCTGCAAACAGACGGGTTGCCCACGGACCTCAATAGGGATTACC AGAAAAACCTTTCGGCCTACAACAAACGAAATATGGACCCCTTCGCCAGG CGCAACAAGATAGCAATTATAGTATTCGGCTCGGAAACGCGTAACTCCAC CGTCGGTCAGCTGAATTTCTTCAGGTGGTTCCTTAAGAACAATATTGGCG GGTTCCTTCATCACAACAAAGACGTCGTCGAGAATCACATGAAAACTACG GAAGCTCGGTCAAAGGGGAAGCACCGAAGGGCAAATAAATCAAGCAGCCA CACAAAGTCGTACAGTGGTAAGTTTAAGATGGTGTTTTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:832455..832994+

>mRNA_D-herbacea_F_contig11.844.1 ID=mRNA_D-herbacea_F_contig11.844.1|Name=mRNA_D-herbacea_F_contig11.844.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1080bp|location=Sequence derived from alignment at D-herbacea_F_contig11:832455..832994+ (Desmarestia herbacea DmunF female)
ATGGATCCATTTCCGTTCATCGGTTGTTCCACTACAGAAGGTCTTTCACG
TTCCGACGAGGTCTTATTGGATTCCGTCATGGAGTGGTACAACGAAGAAT
CTTCGCGTGTCCACAACTTTTTGTCGATAGTTAAACGAAAGAACGGTATG
AGTCTGAGGGTCATCGATTGGCTCGTCACGAACTTCAGCAAAACAAACAC
CGTCACGCTGCAAACAGACGGGTTGCCCACGGACCTCAATAGGGATTACC
AGAAAAACCTTTCGGCCTACAACAAACGAAATATGGACCCCTTCGCCAGG
CGCAACAAGATAGCAATTATAGTATTCGGCTCGGAAACGCGTAACTCCAC
CGTCGGTCAGCTGAATTTCTTCAGGTGGTTCCTTAAGAACAATATTGGCG
GGTTCCTTCATCACAACAAAGACGTCGTCGAGAATCACATGAAAACTACG
GAAGCTCGGTCAAAGGGGAAGCACCGAAGGGCAAATAAATCAAGCAGCCA
CACAAAGTCGTACAGTGGTAAGTTTAAGATGGTGTTTTGAATGGATCCAT
TTCCGTTCATCGGTTGTTCCACTACAGAAGGTCTTTCACGTTCCGACGAG
GTCTTATTGGATTCCGTCATGGAGTGGTACAACGAAGAATCTTCGCGTGT
CCACAACTTTTTGTCGATAGTTAAACGAAAGAACGGTATGAGTCTGAGGG
TCATCGATTGGCTCGTCACGAACTTCAGCAAAACAAACACCGTCACGCTG
CAAACAGACGGGTTGCCCACGGACCTCAATAGGGATTACCAGAAAAACCT
TTCGGCCTACAACAAACGAAATATGGACCCCTTCGCCAGGCGCAACAAGA
TAGCAATTATAGTATTCGGCTCGGAAACGCGTAACTCCACCGTCGGTCAG
CTGAATTTCTTCAGGTGGTTCCTTAAGAACAATATTGGCGGGTTCCTTCA
TCACAACAAAGACGTCGTCGAGAATCACATGAAAACTACGGAAGCTCGGT
CAAAGGGGAAGCACCGAAGGGCAAATAAATCAAGCAGCCACACAAAGTCG
TACAGTGGTAAGTTTAAGATGGTGTTTTGA
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