mRNA_D-herbacea_F_contig11.840.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.840.1
Unique NamemRNA_D-herbacea_F_contig11.840.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig11.840.1 vs. uniprot
Match: B5LWH7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWH7_9PHYC)

HSP 1 Score: 107 bits (267), Expect = 1.780e-27
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 MRQPRDRRRKVRQRKYSKAEYTKSAESIQGCFRAFLRRRYANLCSNSSDDDCIMLEPVKMIPREALVVVDNIAFDSRSLLTWMERSGSHPLTRLPLAANLKEYCLEKVVVFMKREAKRNSRRK 369
            MR PR RR K R R +S  +Y KSA +IQ CF+ +L +RYA LC N +D +CI LEPV +IPR+ L+V+  + FD R+LL W+  S  +PLTR  L  + +  CL K+ VF+ R   R  RR+
Sbjct:    1 MRGPRLRRLKRRSRVHSGEKYEKSATAIQRCFQTYLAKRYAKLCRNYNDVECITLEPVSLIPRDVLIVIGGVGFDCRNLLQWLMTSNLNPLTRDVLPRDTRLVCLRKLHVFISRREPRGFRRR 123
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BLAST of mRNA_D-herbacea_F_contig11.840.1 vs. uniprot
Match: Q6XM74_9PHYC (FirrV-1-A13 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM74_9PHYC)

HSP 1 Score: 99.0 bits (245), Expect = 7.590e-24
Identity = 47/108 (43.52%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:   34 RQRKYSKAEYTKSAESIQGCFRAFLRRRYANLCSNSSDDDCIMLEPVKMIPREALVVVDNIAFDSRSLLTWMERSGSHPLTRLPLAANLKEYCLEKVVVFMKREAKRN 357
            +QR +++  Y  +A +IQ  FRA+L +RY  LC N +D +CI LEPV +IPR  LV++D  AFD+R L+ W+  S +HPLTR P+++ +   C+ K+ VF+ +  KR+
Sbjct:   33 KQRPHARTVYLAAAATIQRFFRAYLAKRYRALCRNHADPECITLEPVSLIPRPLLVILDGHAFDARGLVKWLMNSKTHPLTRQPISSGVFVSCMRKLHVFILQNEKRD 140
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWH7_9PHYC1.780e-2747.15Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM74_9PHYC7.590e-2443.52FirrV-1-A13 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:827296..827664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.1458488-CDS-D-herbacea_F_contig11:827295..8276641622927506.1458488-CDS-D-herbacea_F_contig11:827295..827664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 827296..827664 -
1690790206.0937095-CDS-D-herbacea_F_contig11:827295..8276641690790206.0937095-CDS-D-herbacea_F_contig11:827295..827664Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 827296..827664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.840.1prot_D-herbacea_F_contig11.840.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 827296..827664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.840.1

>prot_D-herbacea_F_contig11.840.1 ID=prot_D-herbacea_F_contig11.840.1|Name=mRNA_D-herbacea_F_contig11.840.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=123bp
MRQPRDRRRKVRQRKYSKAEYTKSAESIQGCFRAFLRRRYANLCSNSSDD
DCIMLEPVKMIPREALVVVDNIAFDSRSLLTWMERSGSHPLTRLPLAANL
KEYCLEKVVVFMKREAKRNSRRK
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mRNA from alignment at D-herbacea_F_contig11:827296..827664-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.840.1 ID=mRNA_D-herbacea_F_contig11.840.1|Name=mRNA_D-herbacea_F_contig11.840.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=369bp|location=Sequence derived from alignment at D-herbacea_F_contig11:827296..827664- (Desmarestia herbacea DmunF female)
ATGAGACAACCAAGGGATAGAAGACGCAAGGTCCGACAGCGCAAATACTC
CAAGGCCGAATATACTAAATCCGCCGAGTCTATTCAAGGATGCTTCCGTG
CTTTCCTGCGACGTCGGTATGCCAACCTTTGTTCGAATTCATCAGATGAC
GATTGTATCATGCTCGAGCCCGTCAAAATGATACCAAGGGAGGCATTAGT
CGTTGTTGACAATATCGCTTTCGATTCACGTTCTCTACTCACATGGATGG
AGAGGTCTGGGTCTCACCCGCTGACCAGGCTACCTTTAGCGGCCAACCTC
AAGGAATATTGCTTGGAGAAAGTGGTGGTGTTTATGAAACGAGAAGCAAA
GAGAAACTCTCGTAGGAAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:827296..827664-

>mRNA_D-herbacea_F_contig11.840.1 ID=mRNA_D-herbacea_F_contig11.840.1|Name=mRNA_D-herbacea_F_contig11.840.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=738bp|location=Sequence derived from alignment at D-herbacea_F_contig11:827296..827664- (Desmarestia herbacea DmunF female)
ATGAGACAACCAAGGGATAGAAGACGCAAGGTCCGACAGCGCAAATACTC
CAAGGCCGAATATACTAAATCCGCCGAGTCTATTCAAGGATGCTTCCGTG
CTTTCCTGCGACGTCGGTATGCCAACCTTTGTTCGAATTCATCAGATGAC
GATTGTATCATGCTCGAGCCCGTCAAAATGATACCAAGGGAGGCATTAGT
CGTTGTTGACAATATCGCTTTCGATTCACGTTCTCTACTCACATGGATGG
AGAGGTCTGGGTCTCACCCGCTGACCAGGCTACCTTTAGCGGCCAACCTC
AAGGAATATTGCTTGGAGAAAGTGGTGGTGTTTATGAAACGAGAAGCAAA
GAGAAACTCTCGTAGGAAGATGAGACAACCAAGGGATAGAAGACGCAAGG
TCCGACAGCGCAAATACTCCAAGGCCGAATATACTAAATCCGCCGAGTCT
ATTCAAGGATGCTTCCGTGCTTTCCTGCGACGTCGGTATGCCAACCTTTG
TTCGAATTCATCAGATGACGATTGTATCATGCTCGAGCCCGTCAAAATGA
TACCAAGGGAGGCATTAGTCGTTGTTGACAATATCGCTTTCGATTCACGT
TCTCTACTCACATGGATGGAGAGGTCTGGGTCTCACCCGCTGACCAGGCT
ACCTTTAGCGGCCAACCTCAAGGAATATTGCTTGGAGAAAGTGGTGGTGT
TTATGAAACGAGAAGCAAAGAGAAACTCTCGTAGGAAG
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