mRNA_D-herbacea_F_contig11.839.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.839.1
Unique NamemRNA_D-herbacea_F_contig11.839.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:823798..824283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-125
Ec32 orthologEc-06_005600.1
Exons1
Model size486
Cds size486
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.1004887-CDS-D-herbacea_F_contig11:823797..8242831622927506.1004887-CDS-D-herbacea_F_contig11:823797..824283Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 823798..824283 -
1690790206.081075-CDS-D-herbacea_F_contig11:823797..8242831690790206.081075-CDS-D-herbacea_F_contig11:823797..824283Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 823798..824283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.839.1prot_D-herbacea_F_contig11.839.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 823798..824283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.839.1

>prot_D-herbacea_F_contig11.839.1 ID=prot_D-herbacea_F_contig11.839.1|Name=mRNA_D-herbacea_F_contig11.839.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=162bp
MNIRSNDDVYLDWMSKWRLWKNAWCDCEDPVVEFYMKFISKGGTYSLRDH
ANFAASLGGTVGTARVDKHGYIEVRNRSMVTPTICVLCDPSERVREDRFG
IVSLKLGFFTRRDILKVALVLEGLGHGVLHDNGKIISALYDNAEKTPRKM
PCRDDPIWRIL*
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mRNA from alignment at D-herbacea_F_contig11:823798..824283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.839.1 ID=mRNA_D-herbacea_F_contig11.839.1|Name=mRNA_D-herbacea_F_contig11.839.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=486bp|location=Sequence derived from alignment at D-herbacea_F_contig11:823798..824283- (Desmarestia herbacea DmunF female)
ATGAATATCCGATCCAACGACGACGTGTACCTAGACTGGATGTCGAAGTG
GAGGTTGTGGAAAAACGCATGGTGCGATTGCGAAGACCCCGTGGTCGAAT
TCTACATGAAATTCATAAGCAAAGGAGGTACGTACTCGCTGAGAGATCAC
GCCAATTTCGCCGCTAGTCTGGGTGGCACTGTAGGCACGGCCAGGGTAGA
TAAACATGGATATATAGAGGTGAGAAATCGTTCAATGGTTACACCTACGA
TTTGTGTACTGTGTGACCCGTCAGAACGCGTTCGAGAAGATCGTTTTGGC
ATCGTCTCATTGAAACTGGGTTTCTTTACAAGAAGGGATATTTTGAAGGT
TGCGTTGGTACTAGAAGGACTAGGCCACGGTGTATTACACGACAACGGGA
AAATTATTTCCGCTCTATATGATAACGCCGAGAAGACACCCCGAAAGATG
CCCTGTCGGGATGACCCCATCTGGAGAATATTGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:823798..824283-

>mRNA_D-herbacea_F_contig11.839.1 ID=mRNA_D-herbacea_F_contig11.839.1|Name=mRNA_D-herbacea_F_contig11.839.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=972bp|location=Sequence derived from alignment at D-herbacea_F_contig11:823798..824283- (Desmarestia herbacea DmunF female)
ATGAATATCCGATCCAACGACGACGTGTACCTAGACTGGATGTCGAAGTG
GAGGTTGTGGAAAAACGCATGGTGCGATTGCGAAGACCCCGTGGTCGAAT
TCTACATGAAATTCATAAGCAAAGGAGGTACGTACTCGCTGAGAGATCAC
GCCAATTTCGCCGCTAGTCTGGGTGGCACTGTAGGCACGGCCAGGGTAGA
TAAACATGGATATATAGAGGTGAGAAATCGTTCAATGGTTACACCTACGA
TTTGTGTACTGTGTGACCCGTCAGAACGCGTTCGAGAAGATCGTTTTGGC
ATCGTCTCATTGAAACTGGGTTTCTTTACAAGAAGGGATATTTTGAAGGT
TGCGTTGGTACTAGAAGGACTAGGCCACGGTGTATTACACGACAACGGGA
AAATTATTTCCGCTCTATATGATAACGCCGAGAAGACACCCCGAAAGATG
CCCTGTCGGGATGACCCCATCTGGAGAATATTGTAAATGAATATCCGATC
CAACGACGACGTGTACCTAGACTGGATGTCGAAGTGGAGGTTGTGGAAAA
ACGCATGGTGCGATTGCGAAGACCCCGTGGTCGAATTCTACATGAAATTC
ATAAGCAAAGGAGGTACGTACTCGCTGAGAGATCACGCCAATTTCGCCGC
TAGTCTGGGTGGCACTGTAGGCACGGCCAGGGTAGATAAACATGGATATA
TAGAGGTGAGAAATCGTTCAATGGTTACACCTACGATTTGTGTACTGTGT
GACCCGTCAGAACGCGTTCGAGAAGATCGTTTTGGCATCGTCTCATTGAA
ACTGGGTTTCTTTACAAGAAGGGATATTTTGAAGGTTGCGTTGGTACTAG
AAGGACTAGGCCACGGTGTATTACACGACAACGGGAAAATTATTTCCGCT
CTATATGATAACGCCGAGAAGACACCCCGAAAGATGCCCTGTCGGGATGA
CCCCATCTGGAGAATATTGTAA
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