mRNA_D-herbacea_F_contig11.828.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig11.828.1
Unique NamemRNA_D-herbacea_F_contig11.828.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A6H5KVE2_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVE2_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 3.010e-106
Identity = 233/515 (45.24%), Postives = 286/515 (55.53%), Query Frame = 3 
Query:  318 AVAATLFFCGASVPTG-----------TSFSSALIT------STPPHTHVAGSRRMRRRLALRRV--FGSPTSSMDMLPGTAPALTA--HTEGELQDLTRRELQAMCKKLRLRAVGKTSELIDRLQQQQLPTSTSTSSHAARDDPSTLTTDEGSVPSPSPPIPPSGGTHQATGTVPLASAPSDE--VGESLLLPPISGEEVDNSNXXXXXXSDRQ--------------------LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGV---------------------------------DVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEP-----TGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRILEPGVGTDQSEG---GVQDRGYSSVFHFTSESLWNRTPVSAS 1610
            AV A L  C  S PTG           TS+SSA  +      ++      A +RR  R  + RR       +S + M    A A T   +T  +L+ L+R ELQ +CKKL LRAVGKTSEL+ R+ +        +  HA R+                     + GT  AT     +S+P DE  +GES +   +S  +   +N      S  +                    LE  R +FDELS EQWA+V QLG LL EWNG++NLISRKDI NVM RHV+PCLAMAKAL  E+G                                   VLDVGTGGGLPGLPLAIC+P V+FTL+DG GKKI AV DM +RLGLRNVR FH+RAEE+ E FD++MGRAVT LPKFVGFI+ NLK N  R+  P     +     LKRG+LYMRGEVSEEELAELGA+PSTVI LQR+LE   G D   G   G  DRGYSS+FHFTSE++WNR P+++S
Sbjct:    6 AVVAGLLLCACSAPTGESFHFPPSSRWTSWSSASSSHSGRSATSSADVPAATTRRSSRHHSPRRSRRISRRSSKIRMAEDGATAATQQQYTAQDLEALSRSELQGLCKKLNLRAVGKTSELLSRVLE--------SDDHARREK--------------------ALGTKPATTESTASSSPKDEAPMGESTMAELLSSVDDGGNNTNYSSGSQEKATPXXXXXXXXXAAPSTDFFLEDIRPVFDELSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDGTYGEMRGAGEDPSRTLPPDPQPPPRREYLPSLSWSVLDVGTGGGLPGLPLAICFPMVKFTLIDGRGKKIKAVADMADRLGLRNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNDGRTSNPADSSSSSSNNSLKRGILYMRGEVSEEELAELGARPSTVIPLQRVLEEA-GQDGDVGLGGGADDRGYSSIFHFTSEAIWNRVPIASS 491
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A7S2V0Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z1_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.220e-56
Identity = 102/200 (51.00%), Postives = 134/200 (67.00%), Query Frame = 3 
Query:  924 LSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRILEPGVGTDQS 1523
            LS++QWAQ+E+LG LL EWN +VNLISRKDI NVM+RH++PCLAMA ++ ++ G  V+DVGTGGGLPGLPLAIC P  QF LVD  GKKI AV DM ERLGL +V+A H R E+I EP D I+GR+VT LP+F+ +   NL    P             RG+ Y++G   E+EL  +  +P   I+L  +      +D++
Sbjct:   62 LSNDQWAQLEKLGDLLTEWNEKVNLISRKDIDNVMVRHILPCLAMAASIDIDPGWTVMDVGTGGGLPGLPLAICNPQTQFLLVDARGKKIEAVADMAERLGLAHVKALHTRVEDINEPCDLILGRSVTALPRFMMWTRKNLVHPGPPGSTKM-------RGIAYIKGGNFEDELGGIDLKPEKAIALNTVFSSLADSDKN 254
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A2D6WPG1_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D6WPG1_9BACT)

HSP 1 Score: 188 bits (478), Expect = 2.090e-51
Identity = 93/202 (46.04%), Postives = 131/202 (64.85%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRILE 1499
            L + + LF  +  E W ++E    LL+EWN ++NLISRKDI  +  RH++ CLA+   L+++    +LDVGTGGGLPGLP+AICYP  QFTL+D  GKKI AVQ +   LGL+NVRA  +RAE++ E FD+I GRAV  LP+F+ +I+NN ++    S         L  GLLY +G    +ELA  G  P+ +  L+++L+
Sbjct:    3 LAALKDLFPHIHPEAWFKLEYWCELLSEWNEKINLISRKDIDALAERHLVHCLAVTNILQIKGSARILDVGTGGGLPGLPMAICYPQAQFTLIDSVGKKIKAVQSIANTLGLKNVRACQMRAEQLGEHFDFITGRAVKNLPEFLSWIQNNARKGHKHS---------LANGLLYWKGGAYSDELAPTGYVPNRIYDLEKMLK 195
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BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A355SZU0_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Opitutae TaxID=414999 RepID=A0A355SZU0_9BACT)

HSP 1 Score: 185 bits (469), Expect = 5.010e-50
Identity = 89/198 (44.95%), Postives = 131/198 (66.16%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQ 1487
            +E  +  F  ++ E W  +++   LL EWN ++NLISRKDI ++  RH+  CLA+   LKL NG  ++DVGTGGG PG+ +AICYP  QFTL+D  GKKI  VQD++ +LGL+NV A   RAEE+++ FD++ GRAV  LP+F  +I+NN++R         G++  +  G+LY +G   ++EL  LG +P  VI+L+
Sbjct:    3 VEQLKQQFPNIAEETWPVLQKWSQLLREWNEKINLISRKDIEHLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKITVVQDLINQLGLKNVEAKQTRAEEVKKQFDFVTGRAVKNLPEFFMWIKNNVRR---------GEKNTIPNGVLYWKGGEMDDELEVLGIRPRKVINLE 191
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A2D7F536_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D7F536_9BACT)

HSP 1 Score: 182 bits (462), Expect = 4.060e-49
Identity = 89/201 (44.28%), Postives = 126/201 (62.69%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRIL 1496
            L  ++ LF  +  + W  +E+   LL EWN ++NLISRKDI  +  RH++ CLA+   L L  G  +LDVGTGGGLPGLP+AICYP  +FTL+D   KK+  VQ + + LGL+NV A  +RAE ++  FD++ GRAV  LP+F+ +I+NNL++    S         L  G++Y +G   E EL  LG Q  TV+ L+ +L
Sbjct:    3 LADYQQLFPNIPEDAWPVLERWAELLREWNTKINLISRKDIDALEERHLLHCLAITNVLILNKGARILDVGTGGGLPGLPMAICYPQAKFTLIDSIAKKVEVVQTIADELGLKNVVARQVRAEALKTQFDFVTGRAVKNLPEFLSWIQNNLEKGDXHS---------LPNGVIYWKGGSIEAELNPLGIQSKTVVELENVL 194
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A350ARR8_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350ARR8_9BACT)

HSP 1 Score: 181 bits (458), Expect = 1.470e-48
Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRIL 1496
            ++S R  F  +S E W  +E+   LL EWN ++NLISRKDI ++   H+  CL +   LKL NG  V+DVGTGGG PG+ +AICYP  QFTL+D  GKKI  VQD+V++LGL+NV A   RAE+I + FD+I GRAV  LP++  +I+ N+++ +  S         +  G+LY +G   ++EL  LG +P  VI+L++  
Sbjct:    1 MQSIRAQFPNVSDETWPILEKWAVLLREWNEKINLISRKDIEHLEEHHLSHCLEITNHLKLMNGARVMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKIKVVQDLVDQLGLKNVEAKQTRAEQINKEFDFITGRAVKNLPEYFSWIKGNVRKGQRNS---------IPNGVLYWKGGDMDDELDALGIRPRKVINLEKTF 192
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A2E1KUV1_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2E1KUV1_9BACT)

HSP 1 Score: 180 bits (456), Expect = 2.620e-48
Identity = 91/201 (45.27%), Postives = 125/201 (62.19%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRIL 1496
            L +F+ LF  +  + W  +E  G LL EWN ++NLISRKDI  +  RH++ CLA+   L+++     LDVGTGGGLPGLP+AICYP  QFTL+D  GKKI  V+ + + LGL+NV A  +RAE++ E FD+I GRAV  LP+F+ +I NN +         +G +  L  GLLY +G    EELA     P  ++ L  +L
Sbjct:    3 LAAFKDLFPHIHTDAWPVLEHWGELLREWNTKINLISRKDIDALNERHLVHCLAVTNILQIKGTAKFLDVGTGGGLPGLPMAICYPQAQFTLIDSVGKKIQVVRSIADALGLKNVSARQMRAEDLGERFDFITGRAVKNLPEFLSWIGNNAR---------SGHKHSLANGLLYWKGGAFAEELASTQYAPDQIVDLGAML 194
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: W7TNU2_9STRA (16s rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNU2_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.850e-48
Identity = 102/228 (44.74%), Postives = 141/228 (61.84%), Query Frame = 3 
Query:  915 FDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKAL-KLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKR--NKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAE-LGA-QPSTVISLQRILEPGVGTDQSEGGVQDRGYSSVFHFTSESL 1583
            F EL+  QW ++E+LG L+ EWN +VN+ISRKD+ NV+  HV+PC+ ++K L K   G  V+DVGTGGG PGLPLAIC P V+F LVD  GKK+  V DM  RLGL+NVR  H R EE+RE F+++ GR+VT +P+FVG++++ L    + P  G P         G+LY++G VS+E   E LG   P+    +  ++          GG    G  SV HF+ + L
Sbjct:   68 FPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVPDD-------GILYIKGGVSDETQEEDLGGWMPTGRYPIGELI----------GGDVYGGDKSVLHFSVQDL 278
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A6N4WUR2_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Lentimonas TaxID=417293 RepID=A0A6N4WUR2_9BACT)

HSP 1 Score: 180 bits (456), Expect = 3.240e-48
Identity = 87/198 (43.94%), Postives = 129/198 (65.15%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQ 1487
            +E  +  F  +S ++W  +E+   LL +WN ++NLISRKDI  +  RH+  CLA+   LKL NG  ++DVGTGGG PG+ +AICYP  QF L+D  GKKI  VQD++++LGL+NV A H RAE I + FD++ GRAV  LP++  +I+ N++R         G++  +  G+LY +G   ++EL  LG +P  VI+L+
Sbjct:    3 VEQLKEQFPNISEDKWPVLEKWAVLLRDWNSKINLISRKDIEYLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFLLIDAIGKKIKVVQDLIDQLGLKNVEAKHTRAEAITKQFDFVTGRAVKNLPEYFSWIKKNVRR---------GEKNTIPNGVLYWKGGDMDDELDTLGIRPRKVINLE 191
[Close]
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Match: A0A6N2CJC9_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A6N2CJC9_9BACT)

HSP 1 Score: 179 bits (455), Expect = 3.710e-48
Identity = 89/198 (44.95%), Postives = 125/198 (63.13%), Query Frame = 3 
Query:  894 LESFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPCLAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMAVQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLKRNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQ 1487
            +E+ +  F  +  + WA++E     L EWN ++NLISRKDI ++  RH+  CLA+   LKL NG  +LDVGTGGG PG+ +AICYP   FTL+D  GKKI  VQD++++LGL+N  A   RAE++ + FD+I GRAV  LP++  +I+ NL+R    S         L  G+LY +G   E+EL  LG +P   ISL+
Sbjct:    1 MEAIKNQFPNVDADAWARLEDWALRLREWNQKINLISRKDIDHLEGRHLAHCLAITNHLKLMNGARILDVGTGGGFPGIIMAICYPQAHFTLIDSIGKKITVVQDLIDQLGLKNAEARQCRAEQVNKQFDFITGRAVKNLPEYFSWIKGNLRRGARNS---------LPNGVLYWKGGELEDELQALGIRPRKTISLE 189
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig11.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVE2_9PHAE3.010e-10645.24SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V0Z1_9STRA4.220e-5651.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2D6WPG1_9BACT2.090e-5146.04Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A355SZU0_9BACT5.010e-5044.95Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A2D7F536_9BACT4.060e-4944.28Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A350ARR8_9BACT1.470e-4844.78Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A2E1KUV1_9BACT2.620e-4845.27Ribosomal RNA small subunit methyltransferase G n=... [more]
W7TNU2_9STRA2.850e-4844.7416s rrna methyltransferase n=1 Tax=Nannochloropsis... [more]
A0A6N4WUR2_9BACT3.240e-4843.94Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A6N2CJC9_9BACT3.710e-4844.95Ribosomal RNA small subunit methyltransferase G n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig11contigD-herbacea_F_contig11:672672..677066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score182.6
Seed ortholog evalue4.1e-43
Seed eggNOG ortholog583355.Caka_2145
Preferred namersmG
KEGG koko:K03501
Hectar predicted targeting categorysignal peptide
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.Specifically methylates the N7 position of a guanine in 16S rRNA
EggNOG OGs3K82P@414999,46VAP@74201,COG0357@1,COG0357@2
Ec32 ortholog descriptionrRNA small subunit methyltransferase G
Ec32 orthologEc-10_005240.1
EC2.1.1.170
COG Functional cat.J
Best tax levelOpitutae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Exons3
Model size2428
Cds size1341
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig11.828.1prot_D-herbacea_F_contig11.828.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig11 672971..676278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.5376325-UTR-D-herbacea_F_contig11:672671..6729701622927504.5376325-UTR-D-herbacea_F_contig11:672671..672970Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 672672..672970 +
1690790205.4383955-UTR-D-herbacea_F_contig11:672671..6729701690790205.4383955-UTR-D-herbacea_F_contig11:672671..672970Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 672672..672970 +
1622927504.5892437-UTR-D-herbacea_F_contig11:676278..6770661622927504.5892437-UTR-D-herbacea_F_contig11:676278..677066Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 676279..677066 +
1690790205.4748082-UTR-D-herbacea_F_contig11:676278..6770661690790205.4748082-UTR-D-herbacea_F_contig11:676278..677066Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig11 676279..677066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.5526805-CDS-D-herbacea_F_contig11:672970..6737631622927504.5526805-CDS-D-herbacea_F_contig11:672970..673763Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 672971..673763 +
1690790205.4507215-CDS-D-herbacea_F_contig11:672970..6737631690790205.4507215-CDS-D-herbacea_F_contig11:672970..673763Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 672971..673763 +
1622927504.5657253-CDS-D-herbacea_F_contig11:675461..6756341622927504.5657253-CDS-D-herbacea_F_contig11:675461..675634Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 675462..675634 +
1690790205.4578729-CDS-D-herbacea_F_contig11:675461..6756341690790205.4578729-CDS-D-herbacea_F_contig11:675461..675634Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 675462..675634 +
1622927504.5790074-CDS-D-herbacea_F_contig11:675903..6762781622927504.5790074-CDS-D-herbacea_F_contig11:675903..676278Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 675904..676278 +
1690790205.4659588-CDS-D-herbacea_F_contig11:675903..6762781690790205.4659588-CDS-D-herbacea_F_contig11:675903..676278Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig11 675904..676278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig11.828.1

>prot_D-herbacea_F_contig11.828.1 ID=prot_D-herbacea_F_contig11.828.1|Name=mRNA_D-herbacea_F_contig11.828.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=447bp
MRTTPGAVAATLFFCGASVPTGTSFSSALITSTPPHTHVAGSRRMRRRLA
LRRVFGSPTSSMDMLPGTAPALTAHTEGELQDLTRRELQAMCKKLRLRAV
GKTSELIDRLQQQQLPTSTSTSSHAARDDPSTLTTDEGSVPSPSPPIPPS
GGTHQATGTVPLASAPSDEVGESLLLPPISGEEVDNSNSSSSSSSDRQLE
SFRGLFDELSHEQWAQVEQLGHLLAEWNGRVNLISRKDIGNVMLRHVMPC
LAMAKALKLENGVDVLDVGTGGGLPGLPLAICYPNVQFTLVDGTGKKIMA
VQDMVERLGLRNVRAFHIRAEEIREPFDYIMGRAVTRLPKFVGFIENNLK
RNKPRSGEPTGKEPLLKRGLLYMRGEVSEEELAELGAQPSTVISLQRILE
PGVGTDQSEGGVQDRGYSSVFHFTSESLWNRTPVSASAVDDVGDRE*
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mRNA from alignment at D-herbacea_F_contig11:672672..677066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig11.828.1 ID=mRNA_D-herbacea_F_contig11.828.1|Name=mRNA_D-herbacea_F_contig11.828.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4395bp|location=Sequence derived from alignment at D-herbacea_F_contig11:672672..677066+ (Desmarestia herbacea DmunF female)
GCGGTGCTGCCTGCACTCTCTGTGTACACGTGTTGACGAGTGTGCATCTC
CTAAGAATATTCTCCGTGTCTGAAAGCGCAATTGGTACAGGGTATCGATC
AAGTGGCGTCGTGGAGCAAGGAGTTGCAGCCACACTATCTCTCATCTGAC
ACGAGACTGTCACATCTGTATGCTACGTACTACATGCTGTATACCTCTCC
CCAGATCTCCACTACACCGTATAGATAGGACACCCGCATTGGAGAGCAAG
GGCGCCCTCTCAGGCTGGCGTAGTCGACGTCTAAATCACAACTACCACCA
TGCGGACGACACCTGGAGCTGTGGCTGCGACTCTGTTCTTTTGTGGCGCT
AGCGTGCCCACTGGCACATCTTTCTCCTCTGCTCTTATCACATCGACTCC
TCCACACACACATGTCGCGGGCAGCAGGAGAATGCGACGAAGATTAGCAC
TGAGACGAGTTTTCGGTAGTCCGACTAGCTCTATGGACATGTTGCCCGGT
ACGGCACCGGCATTGACGGCACACACCGAAGGCGAGCTGCAAGATCTGAC
GCGTAGAGAGCTCCAAGCGATGTGTAAGAAGCTCAGATTGCGAGCGGTTG
GGAAAACGAGCGAGCTCATAGACCGACTGCAGCAGCAGCAGTTGCCAACG
TCAACATCAACATCGTCACATGCAGCCAGGGACGATCCATCGACGCTGAC
GACGGATGAGGGCTCGGTACCGAGTCCCTCGCCGCCAATACCACCATCAG
GTGGCACGCACCAGGCCACGGGAACCGTGCCGTTAGCATCGGCTCCCTCT
GATGAGGTGGGCGAATCGCTTCTACTACCGCCAATCTCTGGAGAGGAAGT
CGACAACAGCAACAGTAGTAGTAGTAGTAGTAGTGACCGTCAGCTGGAAA
GCTTCCGTGGGCTGTTCGACGAGCTCTCCCATGAACAGTGGGCGCAGGTG
GAGCAGTTGGGACACCTTCTGGCGGAGTGGAATGGGAGGGTCAATCTTAT
CTCAAGGAAGGACATCGGGAACGTTATGTTAAGGCATGTGATGCCGTGCC
TTGCAATGGCCAAGGCACTGAAGCTCGAGAATGGCGTGGACGGTGAGTGC
TAAGGGCCAGCGTGCAGTAGTAAATTATTGTGGTTTCGTTTTTCTTCCGT
CCGGTGGGATATTTGTTGTCACATGAAAGACTAATATCAGGCCTTCCTTA
GATGGAGTGGTTGATCTTATCCTGACGGCCACTGGAAACGAGCAAAAAGA
GAGATACACCGATACACGGTACAAGTACTCAAAATGTCTCCCGTGCCATG
CTGTACACGGCCTTTGGACCTCGAGGATGGCTTTGTGGTGATTCACGTGC
CTTTTGATAATGCGACGAGAGAAGAGAGAGATTGGGCAAATGAGGGGTCT
GATGTTTACGGAACGGAAATGATATCATATCAAAAGCTTTTCCGGCGACC
AGGTTTTGGTCGAACGAACGGAAAACTGCCCACTCCTGATACCCACTATC
GTACGGGTTGCCTTTTATCCTTTGCTGTCCTACTCATACTGTAGTAGTGT
CCACTATCATACTTTCAATAACTCTGTCTCCGCTCTCATTCCGGGAGCAG
TCTTGATCTGTGCCAGCTTCAACAATTCCAGCTTTCTGGGCGGAGCGAAG
TATGACAAAATTTGTTCCGGGAAGTGTGTTGCTAAACCGCCCTCAGCATT
ATTCTTGAACCCCCTCGCGTTTGTCTGTGTCAGCATGCATCGGTCGTCGT
GTCTCCTGCGAAGCGCGACGCATGTGTTGGCTCTTTTAAAGACAAGCAGT
GCGGCCATTCTATTGCACATTTACACTCCGTACTACTATTACTTCGTATA
GTATTAACCTACAGAGCGCCCTACTTGCTTGTGGTTAATTTGTATGGTGT
GCTCGTCTCTCTGGACGTACGCATGTGGGAGTTAGCGTTTTGCACCTTAG
CTCCCGATGAACGCCCCTGTATTATCGTTTTGTGGTCAGTGTATTTCCGT
CATCACGTTACCAATCATCTTCATCGATAGTCTGTTTCACGAGCTATCAT
GTCGCCGTTGCCTATTTCGGGGACTAAAGCACTACTGTACTCATCGTAGA
GCTCTAGGTGTACGTTATATTTTTTTGGTTGAAATACGGCTTTTTTCAAT
CGATTGCTTATATCATGGGTTCGTGACCACAAATAGAATAAAAACAGGCG
ATTAATTGGTCGAAATACAGCATTTTTCAATCGATTGCTTACGTCATCAT
GGGCTCATGACCGCAAAGTACAACATTATGGAGCAACTGGAGAGAGTTGC
CTCTGTAGAGCACAAAGAAAGCTGGCAAGGGCAGTTGCATGTGGAATATG
CGGAGGGGGCGTTGCGGTCGTATCCCCCCCCCCTTGTTGTCCCGCTTCAT
TAAGAGACACCGATAATGCCTCTTGTAAGAAGCTACGATGCCAGGGCCAT
ATTCAACACAGAGAACCTACCCTCCACTTTAGCCCGACAGCTTGCATTTG
TTGCAGCGAGAACCCCGCAAAACCGAAACCCGCAGAACGCTGCAGCACGA
AACCTGTACGAGTCTCGTAGTATAATAGCTTGTGATGGGCCTTGCTTCCT
ACGTCAACAACCGCTAGCACAACACGTGTGTACGGCACTGAAGGCAGAGA
CGGCAACGTTTTTTTGGCACGCGTCAATCTACAACACACTCGGCAGCAAA
AGCGTTACATGTACCTGCATCACGAAGAAGTTGGAAGTACCACGCACGGC
TGACTGTTGTCCCTCGCTACACATTCCCACATTCCCGCAGTTTTAGACGT
TGGTACGGGAGGCGGTCTGCCCGGGCTTCCTCTAGCCATCTGCTACCCGA
ACGTGCAATTCACGCTCGTCGATGGTACTGGCAAGAAAATCATGGCGGTG
CAGGACATGGTGGAACGGCTCGGTCTCAGGAATGTGCGGGCGTTTCACAT
CCGGGCGGAAGAAGTGAGTTGTAATGTGGTGATTGCGATGTATTTCAACT
GTCTTTTTGTGTGAGAGCATGGAAGAAAACATTGTTGGGAGCAACGCATG
CTTCCTGTGTGTTAAGATTGTTGTGTATGCCTCTTTTTTGCTGGAACCGA
TGAGGGTTCGGTTGAGACGTCAACCGTGAAACAATTTGTTTATCCCGATC
GTTGAAACTTTGAAAAACACCGCTTTTGTTGACGACCATTTTGGCCCCGA
CTGTCACCGCCTCTTGTCTTGTGATGGCGCAGATCCGCGAACCTTTTGAC
TACATCATGGGCAGGGCCGTAACACGGCTTCCGAAGTTTGTCGGCTTCAT
CGAAAACAACTTGAAGCGCAACAAGCCTCGATCGGGTGAGCCAACGGGCA
AGGAGCCGCTTCTAAAACGCGGCCTGTTGTACATGAGGGGCGAGGTGTCT
GAAGAGGAGTTGGCAGAGCTAGGGGCGCAGCCTTCAACGGTAATCTCGCT
TCAACGGATCTTGGAGCCGGGGGTGGGGACCGACCAATCGGAAGGCGGTG
TACAGGATAGGGGCTACTCTTCTGTGTTTCATTTCACGTCGGAATCTTTG
TGGAACAGAACACCCGTCTCCGCCAGCGCTGTTGATGATGTAGGAGACCG
AGAATAGCTTTCCCTCGTTTAGGTTGTAGGTTGTTGTGTGGGCACATACT
ATACGTACGAGTATATACTGCGGACTCTTCGTGCAAACAAACAAGTACCC
AGCGCGTTGTATCCCTAGCCCTCCGAGCGAGCAATTCGCGGCTTCAAATA
TTTTTGGGTCGGTGTTGTGAAGGGCGGGAGAGGATCGACGAGGGAGTGAA
CTAGAGCGACAACGACCGTGTTCTACTGTACTACTGTACTGTGTTGTACT
TTTAACTGGTTTTCATGTACTCATATGTACTACTGTGCTGCTTTGAACTG
TACCTTACCACGAAGTGGGAATTTGCCGATTGTATCGCGTATCGCGGCGT
CGGACGCGTGGACCAATCAAATCGCTCCTACGTCTATTTGTTGCCGGCCA
CAGCACTACCCGCGTGCAAAACCTGTCGCATATCCCGCTGCGTTATTTTG
AGCATACAGTAACTTATTGCAAGATGAAACGCGAACCCAACGTCTCCACA
ACACCGCGAGATTGGTCTCCAGATAATAAGATGCCTCGTACAAAAAACAA
AGCTGATCCGTGTATCTTGCTAGTGAGGTCGAGTCGGGGGCACTGCTAAC
TATGCAACAAGTGTCTGCAGTTTGCGAACCCGCCTACGGGCAATGGCTTG
TGTGAGCGGTGTTGTTTGCCGAGAATGAAAGTGAAAAGGTGAAAAACTGC
TCCACCGCGCAGCAGAGCGCATCAAACGCACAGCACAAATAAAAAAAGCA
AGCTTCAGCGGAGTGCTCGACCTATTCTCCTGACAAGGGGAGGCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig11:672672..677066+

>mRNA_D-herbacea_F_contig11.828.1 ID=mRNA_D-herbacea_F_contig11.828.1|Name=mRNA_D-herbacea_F_contig11.828.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2682bp|location=Sequence derived from alignment at D-herbacea_F_contig11:672672..677066+ (Desmarestia herbacea DmunF female)
ATGCGGACGACACCTGGAGCTGTGGCTGCGACTCTGTTCTTTTGTGGCGC
TAGCGTGCCCACTGGCACATCTTTCTCCTCTGCTCTTATCACATCGACTC
CTCCACACACACATGTCGCGGGCAGCAGGAGAATGCGACGAAGATTAGCA
CTGAGACGAGTTTTCGGTAGTCCGACTAGCTCTATGGACATGTTGCCCGG
TACGGCACCGGCATTGACGGCACACACCGAAGGCGAGCTGCAAGATCTGA
CGCGTAGAGAGCTCCAAGCGATGTGTAAGAAGCTCAGATTGCGAGCGGTT
GGGAAAACGAGCGAGCTCATAGACCGACTGCAGCAGCAGCAGTTGCCAAC
GTCAACATCAACATCGTCACATGCAGCCAGGGACGATCCATCGACGCTGA
CGACGGATGAGGGCTCGGTACCGAGTCCCTCGCCGCCAATACCACCATCA
GGTGGCACGCACCAGGCCACGGGAACCGTGCCGTTAGCATCGGCTCCCTC
TGATGAGGTGGGCGAATCGCTTCTACTACCGCCAATCTCTGGAGAGGAAG
TCGACAACAGCAACAGTAGTAGTAGTAGTAGTAGTGACCGTCAGCTGGAA
AGCTTCCGTGGGCTGTTCGACGAGCTCTCCCATGAACAGTGGGCGCAGGT
GGAGCAGTTGGGACACCTTCTGGCGGAGTGGAATGGGAGGGTCAATCTTA
TCTCAAGGAAGGACATCGGGAACGTTATGTTAAGGCATGTGATGCCGTGC
CTTGCAATGGCCAAGGCACTGAAGCTCGAGAATGGCGTGGACGATGCGGA
CGACACCTGGAGCTGTGGCTGCGACTCTGTTCTTTTGTGGCGCTAGCGTG
CCCACTGGCACATCTTTCTCCTCTGCTCTTATCACATCGACTCCTCCACA
CACACATGTCGCGGGCAGCAGGAGAATGCGACGAAGATTAGCACTGAGAC
GAGTTTTCGGTAGTCCGACTAGCTCTATGGACATGTTGCCCGGTACGGCA
CCGGCATTGACGGCACACACCGAAGGCGAGCTGCAAGATCTGACGCGTAG
AGAGCTCCAAGCGATGTGTAAGAAGCTCAGATTGCGAGCGGTTGGGAAAA
CGAGCGAGCTCATAGACCGACTGCAGCAGCAGCAGTTGCCAACGTCAACA
TCAACATCGTCACATGCAGCCAGGGACGATCCATCGACGCTGACGACGGA
TGAGGGCTCGGTACCGAGTCCCTCGCCGCCAATACCACCATCAGGTGGCA
CGCACCAGGCCACGGGAACCGTGCCGTTAGCATCGGCTCCCTCTGATGAG
GTGGGCGAATCGCTTCTACTACCGCCAATCTCTGGAGAGGAAGTCGACAA
CAGCAACAGTAGTAGTAGTAGTAGTAGTGACCGTCAGCTGGAAAGCTTCC
GTGGGCTGTTCGACGAGCTCTCCCATGAACAGTGGGCGCAGGTGGAGCAG
TTGGGACACCTTCTGGCGGAGTGGAATGGGAGGGTCAATCTTATCTCAAG
GAAGGACATCGGGAACGTTATGTTAAGGCATGTGATGCCGTGCCTTGCAA
TGGCCAAGGCACTGAAGCTCGAGAATGGCGTGGACGTTTTAGACGTTGGT
ACGGGAGGCGGTCTGCCCGGGCTTCCTCTAGCCATCTGCTACCCGAACGT
GCAATTCACGCTCGTCGATGGTACTGGCAAGAAAATCATGGCGGTGCAGG
ACATGGTGGAACGGCTCGGTCTCAGGAATGTGCGGGCGTTTCACATCCGG
GCGGAAGAATTTTAGACGTTGGTACGGGAGGCGGTCTGCCCGGGCTTCCT
CTAGCCATCTGCTACCCGAACGTGCAATTCACGCTCGTCGATGGTACTGG
CAAGAAAATCATGGCGGTGCAGGACATGGTGGAACGGCTCGGTCTCAGGA
ATGTGCGGGCGTTTCACATCCGGGCGGAAGAAATCCGCGAACCTTTTGAC
TACATCATGGGCAGGGCCGTAACACGGCTTCCGAAGTTTGTCGGCTTCAT
CGAAAACAACTTGAAGCGCAACAAGCCTCGATCGGGTGAGCCAACGGGCA
AGGAGCCGCTTCTAAAACGCGGCCTGTTGTACATGAGGGGCGAGGTGTCT
GAAGAGGAGTTGGCAGAGCTAGGGGCGCAGCCTTCAACGGTAATCTCGCT
TCAACGGATCTTGGAGCCGGGGGTGGGGACCGACCAATCGGAAGGCGGTG
TACAGGATAGGGGCTACTCTTCTGTGTTTCATTTCACGTCGGAATCTTTG
TGGAACAGAACACCCGTCTCCGCCAGCGCTGTTGATGATGTAGGAGACCG
AGAATAGATCCGCGAACCTTTTGACTACATCATGGGCAGGGCCGTAACAC
GGCTTCCGAAGTTTGTCGGCTTCATCGAAAACAACTTGAAGCGCAACAAG
CCTCGATCGGGTGAGCCAACGGGCAAGGAGCCGCTTCTAAAACGCGGCCT
GTTGTACATGAGGGGCGAGGTGTCTGAAGAGGAGTTGGCAGAGCTAGGGG
CGCAGCCTTCAACGGTAATCTCGCTTCAACGGATCTTGGAGCCGGGGGTG
GGGACCGACCAATCGGAAGGCGGTGTACAGGATAGGGGCTACTCTTCTGT
GTTTCATTTCACGTCGGAATCTTTGTGGAACAGAACACCCGTCTCCGCCA
GCGCTGTTGATGATGTAGGAGACCGAGAATAG
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