mRNA_D-herbacea_F_contig109.784.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig109.784.1
Unique NamemRNA_D-herbacea_F_contig109.784.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig109.784.1 vs. uniprot
Match: A0A6H5K8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.220e-31
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 3 
Query:    9 KRDILRWMDRLGIEVDWSLLAPEHSICHERLSNGEILCELAAAVDYAVSGGRGLPVSEVPSRPGRFVLRGTCRA 230
            +RDILRWMDRLG++VDWSLLA E   CH R S+GE+LCELAAAVDYA SGGRGLP+SE+PS PGRFVL+GTC A
Sbjct:  439 RRDILRWMDRLGVKVDWSLLAGEGPRCHHRFSSGEVLCELAAAVDYAASGGRGLPLSEIPSCPGRFVLKGTCGA 512
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8B2_9PHAE4.220e-3177.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig109contigD-herbacea_F_contig109:754254..758138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig109.784.1prot_D-herbacea_F_contig109.784.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig109 754254..758138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927494.1501083-CDS-D-herbacea_F_contig109:754253..7543031622927494.1501083-CDS-D-herbacea_F_contig109:754253..754303Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 754254..754303 +
1690790198.8113005-CDS-D-herbacea_F_contig109:754253..7543031690790198.8113005-CDS-D-herbacea_F_contig109:754253..754303Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 754254..754303 +
1622927494.1603227-CDS-D-herbacea_F_contig109:756066..7561721622927494.1603227-CDS-D-herbacea_F_contig109:756066..756172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 756067..756172 +
1690790198.8214638-CDS-D-herbacea_F_contig109:756066..7561721690790198.8214638-CDS-D-herbacea_F_contig109:756066..756172Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 756067..756172 +
1622927494.1714659-CDS-D-herbacea_F_contig109:758042..7581381622927494.1714659-CDS-D-herbacea_F_contig109:758042..758138Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 758043..758138 +
1690790198.8314593-CDS-D-herbacea_F_contig109:758042..7581381690790198.8314593-CDS-D-herbacea_F_contig109:758042..758138Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 758043..758138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig109.784.1

>prot_D-herbacea_F_contig109.784.1 ID=prot_D-herbacea_F_contig109.784.1|Name=mRNA_D-herbacea_F_contig109.784.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=84bp
WERSGTFSGGWIALGSRWTGPSWPRSTLSATSDCRMERYCASWLQLSTTL
FPVVEDFLCRRCRHALDDLCSAGRAALVLLVLRP
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mRNA from alignment at D-herbacea_F_contig109:754254..758138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig109.784.1 ID=mRNA_D-herbacea_F_contig109.784.1|Name=mRNA_D-herbacea_F_contig109.784.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3885bp|location=Sequence derived from alignment at D-herbacea_F_contig109:754254..758138+ (Desmarestia herbacea DmunF female)
TGGGAGAGAAGCGGGACATTCTCCGGTGGATGGATCGCCTTGGGATCGAG
GTTAGACGTTTCTGGAGTACTGTTCAGCTATCACACTGATATGATATTAT
ATATTGTTCTTGGAGACACCCTTCGACATCCATCATTGAAAGCGATATCA
ATGATTTTTCTTTCTATAGTGGATTTGGTTGGGAGGGTGTATATTGTTGG
CATTATATACTTCGAAGTATGGGAATTGTATCTGGATAGTTGATTTTCGA
AGGAGATTGTCCAAGTATAGCCCTATTGTCGTATATTATTTGGGACTGTC
GGGACGTAAGAGTTAGGAAGTTGTCTACTACACTATCACGAGGGCCCTTA
ATAAATAGGCCCGAAACCCTTATATTGACGTGTGTCTCGCGAGACAGGCG
TGGCGTGAACCGCGGATCTCGTGCATTTTTATCATGCGGTGGCAGTAGAC
TTATCAACCATGGTGATGCTACAGTTTCAGGGGGGGGGAAACGGGGAGGA
TGTTTGCTTCCCCTTTGTCACCTTGTTTTGGGGCTATTTGTTATGGGCCT
CTGTTGTAAGTATCAGTATCACAATAGGAATTGTCCGGACAATATATTTC
GGAGGAAGTTGTCTATTGAAGGGTATCGCCGGGACAACAGGTTGCAGAGG
GTGACGGTTAGTTGCAATGGTTGGGACAATATATTTCGGAGGTTACTGGT
GGCAGGAATTGTTGGGACGTAAGACGTTTTCGGACGGTGTCTACTACATT
TTTTTTTTTCCGTTCCATTTATTATCTTCGCCCGATTCTTTCTCTAGCTC
CATCCTCTCTTCGTAACTCAGTATCCGGGGTCACATAGCAGGCGCTCCTC
CCTCCCGCCTTCCCACTACGGTACGTGCCTACGTGTTTGTCTCGAGAAGA
GTGATTTCTTCCCTCGTCGACCTTCATCGAATTGTGCTTACTCACGCTCT
CGCGTTTTCCGCGACGGAAGATACATACTTCGAAGTATAGTATCATAATA
CGTAATACGAGGCGTCTGAACAATAGATGTCAGAGGTTGTCTATTCACAT
TTAATACAAAGTATAGACCCTAGAGTTACAGTATACTGTAGCTCTCATAT
GCTGTCGTAATGCAATGAAGAAATACCCCTACCCATTGGAAACAGTAGTC
CTACAACTCTGGTCGAAATTATAAATTATGAAACTATTATAAGCCCCGCT
CGAAATTCAGGGAATGTAATTGTTTTGAATATGTTTTAGAGTTCAAGCAG
GTTTTATCATTTCTAATTTCGATCAAAGTGGTAAGTATTTATTTATTGAT
TTGAATTTGGATACATTTCGTGTATATTTATGTTTTATACGTGTGACCAT
GTTGCTTCAAGGGTTAGGGTTGTGCGTCGCGCATCGGTTGATTGATCGAT
ACTGTATAGTCTATACAGCAAGCACGTTGATCGAGCATTTTTAGATTGCG
CCACTTATTGTGGAAAAACCGAATCGTGATAGATGGCTACTTGACGCAAG
TGTTGCACGGTACGACGTCATGCTATGCTTTGCAGGGATGTTCACTATTT
GTGAACCGAACCGCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCG
GTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCGGTTCG
GTTTCTTCGAAGATTCAATCGCTACGGGGCGGTCAAGTTCAGATTTGGTT
ATCGCCGGTAGGTATTTTTATCAACTCATAGAATATGGATATAGCCCATT
CCGTAACCTCCACCTTTGCCCCCCCCCCCCGACACACACACACACACATG
ACTGCAAGAGAAGGTGGACTGGTCCCTCCTGGCCCCGGAGCACTCTATCT
GCCACGAGCGACTGTCGAATGGAGAGATACTGTGCGAGCTGGCTGCAGCT
GTCGACTACGCTGTTTCCGGTGCGTCCGTCCCCGTGTGATTGTTGTGTTG
ATGTTGTTGTTGTTTTTTGTTATTTGGTATCCTCTGGCGGACGGGTAGAA
GCAAAGCTTGAGCTTGCCGCCAAATATGTTGGTTGACGGCAGCTATGCCC
CTTGACGGATGCACGGTCAGTCAAAGAAGCCGTATACTAAAAACAGTATA
GTAACGACGAGGAAGGCTGGTTGCACGGTTGCTTTCACGATTTTTGGCGA
GTCAACCGACATATATTATCTCGCCGCAGTTGTTTCACAGAAAGCTGTGC
ACGTTTGTGTGTTGATTTTCAACCCTGTTGCAGAGCACATTGCTCGATTT
GCTGCCGTTACGGCCGCGAGGGTGTGTTGGCCGCCCTGGTGCTCCCGCCG
TGTTGGTTGATATTGCTGCTGCTAGGGCGCCGGGGGCAAACAAACTACCC
GGGGAGGTGCAGGGTTTGCCCCCGGTGCCCTAGCAGCAGCAACTGGTGCT
CCCGCCGTGTTGGTTGATGTTGCTGCTGCTAGGGCGCCGGGGGCAAACAA
ACTACCCGGGGAGGTGTGGGGTTTGCCCAAGCCTACGCACTAAAATAAAT
CCGCCTTTGTATGCCGCCTTGCCTGCCGGACTCGGGACAACTTTACCGTT
TAGTCTACCCTACCCGTTCGGGTGTTGTGGTTGTGGTGGTGGTTGCGTGT
GGTTGTCTCATTTGTTCATGGCAACGGTTGGTTGCGGTTTGTCGGGACCG
TACGCGTTTTATGTTGACTAGTTATCGAGGTGGGAAATATGGTTTGCACA
GTGGGGTTCCCCTTCTCAAGTTTTGATGGCCTACGGTTTGCAAGATTCCT
GATAATTTTGGACATGACCCCTCCCCCTCCCCCCCCGATTGTCCTACCCC
ACCCCTCGGTATCCCTTAGAGACAGAGAGACCCCCCCCCCCCCCCCCCGG
GAGCACTGAATTTTTACGTTTTTGCCTTAAGCAATTTCCCGCGTTTGGAA
TGTTAAGAGCTAAAAGTGTAACACTAGGATAGTGGTCGGCTCTGCGCGAT
GCTTGTTTTGTGCGTGTCGTTCTCCCGTGCCGTCCATGGTGTTTTTGTGC
CAGTTGGTATGCGAGTAAATTTATACGGAGAATTTATTTTTTTTGGCTCC
TGGCATGTCGCAACACGACATACGGGAAACCACTAAATGAAGACGGAAGG
GACGCCGACGCACACTCGATAGCCATAAGTACTCGCCCGCCCACCCTCCC
GCCCGCTCCTCATCATAGCCTCGTGTACCGAGCCCACCCAACGACTTCGT
GTTCCCGTTGTTCAGCTCGCCCTCCTCTCCCCCTTTCCCGCCCCTTGCCA
TAGTCTCGCCTACAGAACCCACCCAACCAACCTATCCATCCGTGCAACCA
ACCGACCAACCAACCAACCGACCAATCAACCAATCAACCAACCAACCAAC
CAACCAGCCAGCCAGCCAACCAACTCACTAACTAACTAACTAACTAACTA
ACTAACTAACTAACTAACTAACTAACTAACTAAATTAACTAACTAACTAA
CTATCCAACTAACTAACTAACTAACTAACCAACCAACTAACTAACTAACT
AACTAACTAACTAATTAACTAGCTAACTAACTAACTAACTAACTAACTAA
CTAACTAACTAACTAACTAACTAACTAGCTAACTAACTAACTAACTAACC
AACCAACCTACCAACTGACCAACCAACCAACTAACCAATCAACTGACCAA
CCAACCAACCAACCAACCAACCAACGAAACCGACCCAAAGTATGTCCTCC
CTGTGTTGTCGTTCTTCCATCCATCCACACCACCCCCCCACCCCACCACC
CTCCGTCCCTCACTCCCCTTTTCAATCCCCTCGTCGAAGGTGGTAGAGGA
CTTCCTGTGTCGGAGGTGCCGTCACGCCCTGGACGATTTGTGCTCCGCGG
GACGTGCCGCGCTGGTGCTGCTGGTGCTCCGCCCA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig109:754254..758138+

>mRNA_D-herbacea_F_contig109.784.1 ID=mRNA_D-herbacea_F_contig109.784.1|Name=mRNA_D-herbacea_F_contig109.784.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=504bp|location=Sequence derived from alignment at D-herbacea_F_contig109:754254..758138+ (Desmarestia herbacea DmunF female)
TGGGAGAGAAGCGGGACATTCTCCGGTGGATGGATCGCCTTGGGATCGAG
TGGGAGAGAAGCGGGACATTCTCCGGTGGATGGATCGCCTTGGGATCGAG
GTGGACTGGTCCCTCCTGGCCCCGGAGCACTCTATCTGCCACGAGCGACT
GTCGAATGGAGAGATACTGTGCGAGCTGGCTGCAGCTGTCGACTACGCTG
TTTCCGGTGGACTGGTCCCTCCTGGCCCCGGAGCACTCTATCTGCCACGA
GCGACTGTCGAATGGAGAGATACTGTGCGAGCTGGCTGCAGCTGTCGACT
ACGCTGTTTCCGGTGGTAGAGGACTTCCTGTGTCGGAGGTGCCGTCACGC
CCTGGACGATTTGTGCTCCGCGGGACGTGCCGCGCTGGTGCTGCTGGTGC
TCCGCCCAGTGGTAGAGGACTTCCTGTGTCGGAGGTGCCGTCACGCCCTG
GACGATTTGTGCTCCGCGGGACGTGCCGCGCTGGTGCTGCTGGTGCTCCG
CCCA
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