mRNA_D-herbacea_F_contig109.778.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig109.778.1
Unique NamemRNA_D-herbacea_F_contig109.778.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig109.778.1 vs. uniprot
Match: D7G3H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-10
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:    1 RGAWAEDKALWTPEVLSRLRPR--SGPTTTAGGFDEEDTFWVSIEEAMEAFVAVGVCMLG----SSGVCR-YRKAFG---WAQEARRRVWFVPR 252
            RG W +D  LWT E L   +    + P  ++   +E   FWVSIEEA+ AFV VGVCM+     + G CR + +  G   WA E RRRV F  R
Sbjct:  483 RGKWTDDSPLWTQEALIAAQNSCPTHPGMSSYRLEEPGAFWVSIEEAVSAFVEVGVCMVPLPPRTGGDCRGHERILGGSRWAHEVRRRVVFKRR 576
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3H8_ECTSI1.200e-1042.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig109contigD-herbacea_F_contig109:653367..655154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue6.3e-09
Seed eggNOG ortholog2880.D7G3H8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size256
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927495.5919392-CDS-D-herbacea_F_contig109:653367..6535211622927495.5919392-CDS-D-herbacea_F_contig109:653367..653521Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 653368..653521 -
1690790199.8209953-CDS-D-herbacea_F_contig109:653367..6535211690790199.8209953-CDS-D-herbacea_F_contig109:653367..653521Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 653368..653521 -
1622927495.6016896-CDS-D-herbacea_F_contig109:655053..6551541622927495.6016896-CDS-D-herbacea_F_contig109:655053..655154Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 655054..655154 -
1690790199.8306649-CDS-D-herbacea_F_contig109:655053..6551541690790199.8306649-CDS-D-herbacea_F_contig109:655053..655154Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig109 655054..655154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig109.778.1prot_D-herbacea_F_contig109.778.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig109 653368..655154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig109.778.1

>prot_D-herbacea_F_contig109.778.1 ID=prot_D-herbacea_F_contig109.778.1|Name=mRNA_D-herbacea_F_contig109.778.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=85bp
RGAWAEDKALWTPEVLSRLRPRSGPTTTAGGFDEEDTFWVSIEEAMEAFV
AVGVCMLGSSGVCRYRKAFGWAQEARRRVWFVPRG
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mRNA from alignment at D-herbacea_F_contig109:653367..655154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig109.778.1 ID=mRNA_D-herbacea_F_contig109.778.1|Name=mRNA_D-herbacea_F_contig109.778.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1788bp|location=Sequence derived from alignment at D-herbacea_F_contig109:653367..655154- (Desmarestia herbacea DmunF female)
CGGGGGGCGTGGGCGGAAGATAAGGCCCTGTGGACGCCAGAGGTGCTGTC
GAGACTGAGACCACGCTCGGGACCCACGACGACGGCGGGAGGTTTTGATG
AGTGAGTGAGTAAGTGAGTCATTCATGCGCTCGTTGTGAGCGGTGGTAGA
GCTAGGAGGGCACTGAGACCAACTGCAATGAATAAGTTTGTTCTCGCTAT
TGATATGTTTTCTTCCAATTTTCAATCGGGTATCGCGAACTGCGAAGGGT
CGTACATGCTTAGAGGGTACTTTGCTTGCCGATGTAAGATACAGCCCTTT
CCGGATAACCGTGTTCGATGTCTCCCACCGCACGTGTTATCAATCACGAA
AGGAAAGAAGACCATAAAACGTCTTTTTTTAACTACACGACAAGATAGTA
CCCCTGGAGTTCCACGATAGGCTGTACAGGCATGAGTGACCTCATCGGGA
AGGGGTTTCGCTCGGGAAGGGGACACCATACCACGCGGCTCCTCGCGATC
CGATCCCATCTAGCCACACGAGCAATGTCGATCCTGCTATTATACATGCA
TTGTCCCCACTTTTTCGGAAAATGCATATAGGCAGTAGTAGCATAAATGT
ACCTGCTCCCATTTTCTTGCCGACGGACAGTGTGTCTTTGAATTTCGGCT
ACAGTAATTCTATTTGCTATTCGATCCTAAGGACTGCCGCCCTCCTGCCC
GTGGAATGGATAACGAGATCCCTAACTGGATTTGATCACGCGGTCGCGCC
AATTGAACATGTGCATCATTTTGGTAACCCGAGATGTCCCGCATATTGTG
AGCCCTTGCCAAATCGGTTTAACGCCGCAGATATCAACCATTGTACAACT
CAACCAAAGCTGGTAGAAGCCCATGCAAGGCCAATGGTTGATATATATAT
ATATGTATATCACATGAAATGCGTTATTGTTGGGGTGTAATCATTGTGAA
ACGTCACGTCAGCTCGCAAAAACCATGCACATCGTTCCGTCCTGGTATTA
TTGCACTGTTATGCACGCAAGGTCAATGGGTTGACACATATGGAAGGCGT
TATCATGGGTACAGTGGTTGATCCCGCGTCCCCCAAATGTTTTGAGGAGG
GTGATAGCGACAAGTGTCTTTAGGGAGGAAAACAAAACGCGTGCAAATAA
TGAAGTCATGCGGTGGGAGAATGAGAAGGGACGGGCGCGCGTTGATACAA
TCAACAAGCGAGGCTTTGAAGGCCGCGGGAGGGGGAGGGGGGGGTCACGT
TCGAATTTTAAATTGTAATATAAACATTGCGAGATGGGAGCAATGGTGAT
ACAGAGTAGATACTATAAAAATAGCTTGGGTAGTGACATGTAGCTTGAGA
GCAGAGAGGCTGGAATCATCCCGGTCGGCAGGTCACGAACATCCTTTCTT
CTGTTTTCATACCAAAGGTAGAGCGAAACACCTGTCGAAGCGAATGCCCA
TTTGATGATGGCTCCCGGTGTAAACCTTAGATCCCGTCGCCCCGAGGACG
TGGAGCTACAACAACAGTAAAATACTGTAGTGTTCTTACGCCTTAGGCAT
CCCAAAAATGTGAGTTACCTTCCACGTTGTCCACCCCGTATCCTCCCGTA
CAATCTCCCCTACCGGCCGAAAACCTTCAACAGGGAAGACACATTTTGGG
TTTCCATCGAGGAGGCCATGGAGGCGTTTGTGGCAGTCGGGGTATGCATG
TTGGGATCCTCCGGAGTTTGCAGATACCGGAAGGCGTTCGGATGGGCCCA
AGAAGCTAGGAGGCGTGTTTGGTTTGTGCCAAGGGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig109:653367..655154-

>mRNA_D-herbacea_F_contig109.778.1 ID=mRNA_D-herbacea_F_contig109.778.1|Name=mRNA_D-herbacea_F_contig109.778.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=510bp|location=Sequence derived from alignment at D-herbacea_F_contig109:653367..655154- (Desmarestia herbacea DmunF female)
CGGGGGGCGTGGGCGGAAGATAAGGCCCTGTGGACGCCAGAGGTGCTGTC
GAGACTGAGACCACGCTCGGGACCCACGACGACGGCGGGAGGTTTTGATG
ACGGGGGGCGTGGGCGGAAGATAAGGCCCTGTGGACGCCAGAGGTGCTGT
CGAGACTGAGACCACGCTCGGGACCCACGACGACGGCGGGAGGTTTTGAT
GAGGAAGACACATTTTGGGTTTCCATCGAGGAGGCCATGGAGGCGTTTGT
GGCAGTCGGGGTATGCATGTTGGGATCCTCCGGAGTTTGCAGATACCGGA
AGGCGTTCGGATGGGCCCAAGAAGCTAGGAGGCGTGTTTGGTTTGTGCCA
AGGGGGGGAAGACACATTTTGGGTTTCCATCGAGGAGGCCATGGAGGCGT
TTGTGGCAGTCGGGGTATGCATGTTGGGATCCTCCGGAGTTTGCAGATAC
CGGAAGGCGTTCGGATGGGCCCAAGAAGCTAGGAGGCGTGTTTGGTTTGT
GCCAAGGGGG
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