mRNA_D-herbacea_F_contig109.775.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig109.775.1 vs. uniprot
Match: A0A6H5KS89_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS89_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.770e-51 Identity = 209/566 (36.93%), Postives = 264/566 (46.64%), Query Frame = 3
Query: 2274 AAPVRWGKEGAEERANSRTPPE---RASSQSSDEALPPDLGPL------GYKGRAVAATAGAAQVGRQKLLRRAP--------VSGDDNGDPRSGDIKYDTPFFCGPMDAGADVMMAGGGR-------AAAARDAGNGPVVCASRSSDDRPTMNDRRD----GVARGNAAASVAAASGRG-AAR-------GDGLCALEESNGNGEGVAGDSMTQQQHQMKNR----RRIEEILANDTGEWSQAAPSGRWRIRW-PGRSRHVTIGTCLESPAVARVGGG------GGKMFNGRLSPSSSIPTTDCTTSGAGTAHLSEHESRIFFSSSSTNSSPAELTRVSRRSERRRRPS----------PQSLNPRAPQLSSSCSDTTQYKGHYSADNARGDGGGGGRRFRRWVAG-RIGGGGTAVPSEDLVRRWMLVVLGARAMLLADS-------------AVSLADGLRDGQVLVRLARAVGGARVAGMAEELEATTPMLQLVNVHAFTAAARAIGVPETSLFHPRHLVDAPSYGRCSTAVLKCVAALSEAVRRNASRDLPGDYYDGPLLGD 3758
AAPV+WG+EGA ER ++ E A S ++ PPD PL G A +T + GRQ+ ++GDDN +G ++ G ++ G + GR AA R A NG P+ D ++ GV A A VAAA G G AR DGL + ++ +G S + + + R RRIE L N+ GEW Q P R+R+ W PGR+RHV +G CL+SP VAR G G K F + DC G +A SE FSSS+ ++ R + R P+ N G+GGG R RRWV G R +PSE LV +W+ VLG RA+ L + L + L+DG++LVRLA AVGGAR A AE+LEATTPMLQLVNVHAF AAARAIGVP TSLFH + LVD P G CS AVLKC++ALS+A RRNAS D PG YDGPLLGD
Sbjct: 743 AAPVKWGREGAAER-RAKAAAEGSGNAGSPGAEGDEPPDFSPLASHRRSGGSSTAGFSTTSGSSSGRQQWHAYGKGGGNSTKSINGDDNNAAFNGRLET------GDIEQGEERER---GRRWTTETAAAEYRGAANGGESTVPPP----PSYTDAQEAEWLGVLPHAAWAEVAAAGGTGETARLQHKRRSSDGLVSFQDDGSGADGGTPRSSSLRTLGQRRRGGGGRRIEVFLDNEEGEWGQT-PRSRFRLFWWPGRNRHVPVGVCLDSPNVARSSWGSKDAKEGAKRF---AWDTEGEGDADCN--GGHSAVGSERRIDARFSSSTESALLCSEVAAQRGATTGRNPTNGQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAGEGGGK-NRLRRWVHGKRHTSEADGIPSEQLVEKWIRAVLGPRALGLVEEKRDYDDDGPVGSGGRGLGEELKDGRLLVRLAHAVGGARAASCAEDLEATTPMLQLVNVHAFMAAARAIGVPATSLFHAKDLVDGPPGGPCSPAVLKCLSALSDAARRNASIDPPGTAYDGPLLGD 1287
BLAST of mRNA_D-herbacea_F_contig109.775.1 vs. uniprot
Match: D7G3I0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I0_ECTSI) HSP 1 Score: 187 bits (476), Expect = 1.960e-44 Identity = 143/350 (40.86%), Postives = 173/350 (49.43%), Query Frame = 3
Query: 2835 RRIEEILANDTGEWSQAAPSGRWRIRW-PGRSRHVTIGTCLESPAVARVGGG------GGKMFNGRLSPSSSIPTTDCTTSGAGTAHLSEHESRIFFSSSSTNS---SPAELTRVSRRSERRRRPSPQSLNPRAPQLSSSCSDTTQYKGHYSADNARGDGGGGG----------------RRFRRWVAG-RIGGGGTAVPSEDLVRRWMLVVLGARAMLLADS-------------AVSLADGLRDGQVLVRLARAVGGARVAGMAEELEATTPMLQLVNVHAFTAAARAIGVPETSLFHPRHLVDAPSYGRCSTAVLKCVAALSEAVRRNASRDLPGDYYDGPLLGDQQ 3764
RR+E L N+ GEW Q P R+R+ W PGR+RHV +G CL+SP VAR G G K F DC G G+ SE FSSS+ ++ S T +R +R RRWV G R +PSE +V++W+ VLG RA+ L + L + L+DG++LVRLA AVGGAR AG AE+LEATTPMLQLVNVHAF AAARAIGVP T LFH + LVD P G CS AVLKC+AALS+A RRNAS D PG YDGPLLGD++
Sbjct: 905 RRMEVFLDNEEGEWGQT-PRSRFRLFWWPGRNRHVPVGVCLDSPNVARSSRGSKDAEEGAKRFAWDTEDGGDA---DCN--GGGSVVGSERRIEARFSSSTESALLCSEVVGTFHTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVXXXXXXKKRLRRWVHGKRYTNEADGIPSEQMVKKWVRAVLGPRALGLVEEDGDDDDDGPVGSGGRGLGEELKDGRLLVRLAHAVGGARAAGCAEDLEATTPMLQLVNVHAFMAAARAIGVPATYLFHAKDLVDGPPGGPCSPAVLKCIAALSDAARRNASTDPPGTAYDGPLLGDEE 1248 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig109.775.1 >prot_D-herbacea_F_contig109.775.1 ID=prot_D-herbacea_F_contig109.775.1|Name=mRNA_D-herbacea_F_contig109.775.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=555bp MPAMPLVVPSVPAVLPSVPLVPSVGATEPQSHQPKSASAELATLVGTSDVback to top mRNA from alignment at D-herbacea_F_contig109:590980..623559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig109.775.1 ID=mRNA_D-herbacea_F_contig109.775.1|Name=mRNA_D-herbacea_F_contig109.775.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=32580bp|location=Sequence derived from alignment at D-herbacea_F_contig109:590980..623559+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig109:590980..623559+ >mRNA_D-herbacea_F_contig109.775.1 ID=mRNA_D-herbacea_F_contig109.775.1|Name=mRNA_D-herbacea_F_contig109.775.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=3330bp|location=Sequence derived from alignment at D-herbacea_F_contig109:590980..623559+ (Desmarestia herbacea DmunF female)back to top |