mRNA_D-herbacea_F_contig109.774.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE) HSP 1 Score: 171 bits (433), Expect = 3.960e-45 Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = 3
Query: 723 EWIQAECSREMSNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EWI+ C++++SN +VG LLYR+ + R GRIKIPPL + R ARIRR LVE + A+ QE++ AVIVYMDESFCHQLHGSAYSYF T+ +GVV+DGMGRTSGKG RMIMVHAITK G + A + FP+P+ +F
Sbjct: 201 EWIKERCNKDLSNRAVGGLLYRIGYRRRGGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWF 334
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 175 bits (444), Expect = 6.710e-45 Identity = 87/134 (64.93%), Postives = 107/134 (79.85%), Query Frame = 3
Query: 723 EWIQAECSREMSNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EWI+ C++++SN +VG LLYR+ + RRGRIKIPPL + R ARIRR LVE + A+ QE++ AVIVYMDESFCHQLHGSAYSYF T+ DGVV+DGMGRTSGKG RMIMVHAITK G + A + FP+P+ +F
Sbjct: 201 EWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKIPPLNDDRKARIRRFLVEMSAALTQEEKEEAVIVYMDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITKGGALAAVDENNFPIPEGWF 334
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5JWS3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS3_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.500e-42 Identity = 89/147 (60.54%), Postives = 104/147 (70.75%), Query Frame = 3
Query: 687 RAGIKSSDGQWLEWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
+AG + S EW+ C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P+ + +F
Sbjct: 95 QAGRQVSRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLPIEEGWF 240
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE) HSP 1 Score: 158 bits (400), Expect = 8.210e-42 Identity = 86/135 (63.70%), Postives = 100/135 (74.07%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ + C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P+ + +F
Sbjct: 65 EWMHSTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLPIEEGWF 198
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5KU97_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU97_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.800e-40 Identity = 84/129 (65.12%), Postives = 94/129 (72.87%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFP 1106
EW+ C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE R ED G AVIVYMDESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P
Sbjct: 71 EWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMPKRAEDTGIAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLP 198
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.580e-40 Identity = 86/135 (63.70%), Postives = 100/135 (74.07%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ C+ E SN S G LL R+ CK RRGRIK PPL RLARIRR LVE A R ED G AVIVY+DESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P+ + +F
Sbjct: 268 EWMHRTCNMEQPSNGSAGGLLSRLGCKRRRGRIKTPPLKAERLARIRRFLVEMVMAKRAEDAGLAVIVYVDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLPIEEGWF 401
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.440e-39 Identity = 87/135 (64.44%), Postives = 101/135 (74.81%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ C+ E SN SVG LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS YSYFP++ +GVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DGFP+ + +F
Sbjct: 236 EWVHRTCNMEQPSNRSVGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKFCDGFPIEEGWF 369
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.720e-39 Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P+ + +F
Sbjct: 85 EWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLPIEEGWF 218
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 158 bits (400), Expect = 7.060e-39 Identity = 86/135 (63.70%), Postives = 99/135 (73.33%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS YSYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK DG P+ + +F
Sbjct: 202 EWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCDGLPIEEGWF 335
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE) HSP 1 Score: 153 bits (386), Expect = 6.210e-38 Identity = 85/135 (62.96%), Postives = 98/135 (72.59%), Query Frame = 3
Query: 723 EWIQAECSREM-SNLSVGRLLYRVRCKHRRGRIKIPPLTEARLARIRRILVEFADAIRQEDEGTAVIVYMDESFCHQLHGSAYSYFPTNGDGVVEDGMGRTSGKGQRMIMVHAITKYGPVVAKGADGFPMPKVFF 1124
EW+ C+ E SN S G LL R+ K RRGRIK PPL RLARIRR LVE A R ED G AVIVYMDESF HQ HGS SYFP++ DGVV+DG+GRT+GKG RMIMVHAITK+GP+ AK GFP+ + +F
Sbjct: 175 EWMHRTCNMEQPSNRSAGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPCSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPL-AKLCYGFPIEEGWF 308 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig109.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig109.774.1 >prot_D-herbacea_F_contig109.774.1 ID=prot_D-herbacea_F_contig109.774.1|Name=mRNA_D-herbacea_F_contig109.774.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=166bp MPSVSSFPRSSSASTRAGIKSSDGQWLEWIQAECSREMSNLSVGRLLYRVback to top mRNA from alignment at D-herbacea_F_contig109:232950..234735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig109.774.1 ID=mRNA_D-herbacea_F_contig109.774.1|Name=mRNA_D-herbacea_F_contig109.774.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1786bp|location=Sequence derived from alignment at D-herbacea_F_contig109:232950..234735- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig109:232950..234735- >mRNA_D-herbacea_F_contig109.774.1 ID=mRNA_D-herbacea_F_contig109.774.1|Name=mRNA_D-herbacea_F_contig109.774.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=996bp|location=Sequence derived from alignment at D-herbacea_F_contig109:232950..234735- (Desmarestia herbacea DmunF female)back to top |