mRNA_D-herbacea_F_contig1077.700.1 (mRNA) Desmarestia herbacea DmunF female
|
Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 528 bits (1359), Expect = 5.240e-182 Identity = 270/432 (62.50%), Postives = 316/432 (73.15%), Query Frame = 1
Query: 100 EDGGCGTMTDLYNSRVESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAP-DASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNTFKDAGSDLCYKN 1392
E GC T+TDLYN R+ESDG + KGPI+ LDD+ + + +P ++ KWLLT++L + G++FYCRG+ IGGDCDELRIQSTG TDFHEVR HGGS+YFE+T+VTSWDTPNK+PQ Y GRSF+NCVSE + E C GQ QN+ GECRMDII SE+GYLG+FDSESYGLTWKVRGFC D SNP+VFDTTNVYG++ SDIHH YYG YSYG QGGVW NN+MHDNHQYGFDPHDDSDYLT +GG A GIFLHRSSD V+DNVVHDMQDAGMA++ES +ADI++N F++VK+GIR+SLG N+V++N+F+ S GLYTYQGSD P D SDGRPSDN F N I N GVKI E DDTVIT DN FTGTS LEF DAQ W NT +C KN
Sbjct: 83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVY------------DGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVIT-DNVFTGTSELEFFDAQNTRWKGNTLPQG---VCIKN 497
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 518 bits (1334), Expect = 2.730e-173 Identity = 256/441 (58.05%), Postives = 310/441 (70.29%), Query Frame = 1
Query: 46 KASTRWASATGLNGRIYLEDGGCGTMTDLYNSR-VESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNTFKD 1365
+ S R+A+++G+ GR+Y E GC TMTDLYN R E+DG + KGP+Y+LDD+ + P+ +T WLL ++L++ G +FYC+GT GGDC++LRIQSTGS DFHEVRGHGGSLYFE+T+VTSWDTPNK PQ+ YENGRSF+NCVSE + + CEG +N+ GECRMDII SE+ YLG+FDSESYG+TWKVRGFC D SNPEVF+ TNVYGD+ SDIHH+YYG YSYG QGGVWTNNKMHDN QYGFDPHDDSDYLTIA +GG+ A GIFLHRSSD V+DN + +MQDAG+A++ESFDA I+ N KYGIR+SLG GNN VY N F S+YGLYTY+GSD PD S DGRPS N N + + GVKI E DD NTF EF ++ +WS N D
Sbjct: 427 RPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEF-YQNTFINVDAFEFPESTNTMWSGNDIGD 864
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 488 bits (1257), Expect = 2.070e-167 Identity = 252/441 (57.14%), Postives = 308/441 (69.84%), Query Frame = 1
Query: 100 EDGGCGTMTDLYNSR-VESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNTFKDAGSDLCYKN 1392
E GC T+TDLYN R E+DG + KGP+Y+LD + + +PTSVT KWLL ++L+V G+IFYC G++ GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWDTPNK PQ+ YE GRSF+NCVSE + ETC+G +ND GECRMDII SEMGY+G+FDSESYGLTWKVR GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYG QGGVWTNN+MHDNHQY +A +GG AVGIFLHRSSD+ EVY N + +M DAG+A++ESF+ADIHDN V++GIR+SLG G N+VYDN F+ CS +GLYTY GSD PD S+ GRP+ N+F N ++N+ GVK +D+ V+T +N FTGT LEF DAQ WS N+ S +C N
Sbjct: 18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVT-NNEFTGTEELEFYDAQATTWSGNSLP---SGVCIDN 440
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 458 bits (1178), Expect = 1.040e-155 Identity = 230/420 (54.76%), Postives = 289/420 (68.81%), Query Frame = 1
Query: 100 EDGGCGTMTDLYNSRVESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEY-ESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNT 1356
+ GGC T++DLY + + KGP+++LD ND + + T+ TGKWLLT+DLFV G+ YCRG +GG+C ELRI+ST +DF E+RGHGG+LYFE+T+VTSWD + PQ+ Y++GRSFI CVSE ++TC N+ GECRMDII SEMGYLG+ SE+YG+TWKVRGFC+D SNP+VFD NVYGD+K SDIHHMYYGMYS+G QGGVWTNN MHDNHQYGFDPHDDSDYL IA +GG+ A GIFLHRS D EVY N + +M DAG+A++E+ DIHDN ++GIR+ LG NN V+DNVF G++TY GSD P GRP DN FY NTI T TGVKI E+D+ IT +N F+GT+ +EF +A ++VWS N+
Sbjct: 7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG-GRPCDNEFYNNTIQATETGVKIKESDNISIT-NNAFSGTTEIEFNNAIDIVWSGNS 421
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 427 bits (1098), Expect = 5.900e-145 Identity = 209/348 (60.06%), Postives = 249/348 (71.55%), Query Frame = 1
Query: 121 MTDLYNSR-VESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSK 1137
MTDLYN R E DG + KGP+Y+LDD+ + P+ +T WLL ++L++ G +FYC+GT GGDC++LRIQSTGS DFHEVRGHGGSLYFE+T+VTSWDTPNK PQ+ YE GRSF+NCVSE + + CEG +N+ GECRMDII SE+ YLG+FDSESYG+TWK VRGFC D SNPEVFD TNVYGD+ SDIHH+YYG YSYG QGGVWTNNKMHDN QYGFDPHDDSDYLT +GG+ AVGIFLHRSSD V+DN + +MQDAG+A++E+FDA I+ NT KYGIR+SLG GNN VY N F S+
Sbjct: 1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVR------------DGGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 423 bits (1088), Expect = 6.100e-137 Identity = 226/441 (51.25%), Postives = 290/441 (65.76%), Query Frame = 1
Query: 85 GRIYLEDGGCGTMTDLYNSRVESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESD--ETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSD--GRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLE--FKDAQEMVWSSNTFKDAGSDLCYK 1389
G+ Y+ GGC T+TD+Y ++ G GP+++LD ND+++ S TG WLL D+ V +GS+ G D GGD LRIQSTGS D++E+RGHGGSL F +T VTSWDT K +Y+ RSFI CVSE +D +TC+G N GECRMDII SEMG +G+ +ESYG++WKVRG+C++ NPEVF+ T V GDI +SDI+ MYYG YS+G GG+WT NKMHDN QYGFDPHDDSD L IA +GG AVGIFLHRSSD CEV+ N V+DM+DAGMAIMES A IHDNTFTNVKYGIR+S+G N V +N F +C +YG+YTYQG+D P+AS D G DN+F+ NT+ GVKI +A+ V T +N + +S E F+D +++VW++N D D+C K
Sbjct: 398 GKNYIRGGGCATLTDIYTAQG---GHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVEG---GVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPD---DICLK 827
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 9.520e-137 Identity = 230/403 (57.07%), Postives = 270/403 (67.00%), Query Frame = 1
Query: 184 ILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNTFKDAGSDLCYKN 1392
+LDD+ + + SPTSVT KWLL S+L+V G+IFYC G++ GGDCDELRIQSTG D++EVRGHGGS+YF +T+VTSWDTPNK PQ+ YE GRSF+NCVSE + ETC+G+ +ND GECRMDII SEMGY+G+FD+ESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYG QGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX +GG +AVGIFLHRSSD+ EVY G DAPD S+ GRP+ N+F N I+NT GVKI +D+ VI ++N FTGT LEF DAQ WS N+ S +C N
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVSN-GRPNGNTFNNNKITNTAGGVKIKNSDNIVI-SNNDFTGTEELEFFDAQATTWSDNSLP---SGVCIDN 343
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 3.570e-135 Identity = 225/432 (52.08%), Postives = 284/432 (65.74%), Query Frame = 1
Query: 94 YLEDGGCGTMTDLYNSRVESDGWTPKGPIYILDDNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEYESDET--CEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKS------NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDA-SSDGRPSDNSFYGNTISNTGT--GVKIAEADDTVITADNTFTGTSLLEFKDAQEMVWSSNT 1356
Y E GGCGT+T +Y ++ E DG P+Y+LD+N+D++ + TG WLL +L V+ GS GT GD D LR+ ST S DF EVRG+GG+L+F++T VTSWDT N ++ +GRSFINCV++++ C+G+ ++GECRMDII S MG +GWFD+ESYGLTWKVRG C N E+F+ NVYGDI NS+I+ MYYG YSYG QGGVW +N M DN QYGFDPHDDSD LTI+ +GG AVGIFLHRSSD EV+DNVV++MQDAGMA+MES+DA+I+DN+FTN +YGIR+SLG G N + +N+F ++YGLYTY GSD PD +S+GRPSDN F GNTI G GV I E D V DN FTG S EF+D+ + W NT
Sbjct: 192 YFEGGGCGTLTQMYEAQ-EGDG-----PLYVLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLST-SDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVF-IDNVFTGVSTYEFEDSSDTTWVDNT 613
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 369 bits (947), Expect = 6.520e-120 Identity = 218/470 (46.38%), Postives = 273/470 (58.09%), Query Frame = 1
Query: 1 SPIQIMTIPDTCTGTKASTRWASATGLNGRIYLED------GGCGTMTDLYNSRVESDGWTPKGPIYILD-DNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEY--ESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTF-TGTS---LLEFKDAQEMVWSSNTFKDAG 1371
SP ++ PD + + S R+A G R+YLE GGC T+ ++ SR K P+Y +D D+ D+ + T G WLLT +L+V G GTD GGD DELR+ ST T + +R HGGSL F T V SWDT SP +D +GRS+I+ VSE + DETCEG +N GE RMDI SE+GYLG+ DSESYGLTWKVRGFC DKSNPE+FD NVYG++ +SDIHH+ +G+Y+YG Q G W NKMHDN YGFDPHDDSD+LTI G + GIFLHRSSD V N VHD DAG+A++ESF+AD+ +NTF N KYG+R+S+G +N +N+ SKY YTY GSD PD S GR +N F N+ S +KI EAD T DN F G + ++ F DA V NT D G
Sbjct: 33 SPNDPISKPDCDSDIEVSIRYA---GTTKRLYLESADGETRGGCATLGQIWESRAG------KAPLYAVDPDSGDVSETET---GTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQF-LDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEG 488
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 363 bits (931), Expect = 1.470e-117 Identity = 208/446 (46.64%), Postives = 264/446 (59.19%), Query Frame = 1
Query: 76 GLNGRIYLED-------GGCGTMTDLYNSRVESDGWTPKGPIYILD-DNDDIMYSPTSVTGKWLLTSDLFVLKGSIFYCRGTDIGGDCDELRIQSTGSTDFHEVRGHGGSLYFENTLVTSWDTPNKSPQDDYENGRSFINCVSEY--ESDETCEGQPQNDYGECRMDIIGSEMGYLGWFDSESYGLTWKVRGFCADKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGQQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGSQAVGIFLHRSSDSCEVYDNVVHDMQDAGMAIMESFDADIHDNTFTNVKYGIRISLGGGNNNVYDNVFDQCSKYGLYTYQGSDAPDASSDGRPSDNSFYGNTISNTGTGVKIAEADDTVITADNTF-TGTS---LLEFKDAQEMVWSSNTFKDAG 1371
G R+YLE GGC T+ ++ SR KGP+Y +D D+ ++ TS TG WLLT +L+V G G++ GGD DELR+ ST T F +R HGGSL F +T V SWDT SP +D +GRS+I+ +SE + DETCEG +N GE RMDI SE+GYLG++DSESYGLTWKVRGFC DKSNPEVFD NVYG++ +SDIHHM +G+Y+YG Q G W NKMHDN YGFDPHDDSD+LTI G + GIFLHRSSD V N VHD DAG+A++ESF+AD+ +NTF N KYG+R S+G +N +N ++Y Y+Y G+D PD S GR +N F N+ S +KI EAD T DN F G + ++ F +A E + NT D G
Sbjct: 50 GTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNVS---TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQF-LDNVFEVGDADGLVVRFDNATENLMQGNTGLDDG 484 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1077.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1077.700.1 >prot_D-herbacea_F_contig1077.700.1 ID=prot_D-herbacea_F_contig1077.700.1|Name=mRNA_D-herbacea_F_contig1077.700.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=460bp MTIPDTCTGTKASTRWASATGLNGRIYLEDGGCGTMTDLYNSRVESDGWTback to top mRNA from alignment at D-herbacea_F_contig1077:57301..60361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1077.700.1 ID=mRNA_D-herbacea_F_contig1077.700.1|Name=mRNA_D-herbacea_F_contig1077.700.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3061bp|location=Sequence derived from alignment at D-herbacea_F_contig1077:57301..60361- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1077:57301..60361- >mRNA_D-herbacea_F_contig1077.700.1 ID=mRNA_D-herbacea_F_contig1077.700.1|Name=mRNA_D-herbacea_F_contig1077.700.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2760bp|location=Sequence derived from alignment at D-herbacea_F_contig1077:57301..60361- (Desmarestia herbacea DmunF female)back to top |