mRNA_D-herbacea_F_contig1074.696.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A6H5JV26_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV26_9PHAE) HSP 1 Score: 105 bits (261), Expect = 7.560e-24 Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 7 DDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWC--GRNLLGQTLESARDILR 348
DDV+LFW S FSQWT S F V V Y+ IVL G+ AKF+QN++++ LL+TG R LAEASP D +WGIG+ AC P AS W G+NLLG+ L R +LR
Sbjct: 76 DDVLLFWKSPSVFSQWTPSAFDVLGVRYSCE----------IVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMFACFPEASVSSKWAASGKNLLGKALMEVRRLLR 181
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: UPI00137870CE (NADAR family protein n=1 Tax=Streptomyces boluensis TaxID=1775135 RepID=UPI00137870CE) HSP 1 Score: 99.8 bits (247), Expect = 8.270e-24 Identity = 61/145 (42.07%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 37 SAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILR 348
S SQW QSPFTVD VEY E +MMA+KA IV++G++ KF + E+R LL TGDR L EASP D +WGIGL+A DPRA P W G NLLG L AR LR
Sbjct: 52 SCLSQWWQSPFTVDGVEYATAEHWMMAAKARLFDDPEAERMATAATSPGAAKKAGRLVRGFDESRWERERFGIVVEGSVHKFGAHPELRDYLLGTGDRVLVEASPRDRIWGIGLTATDPRAEHPSQWRGTNLLGFALMEARGRLR 196
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A6H5KC07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC07_9PHAE) HSP 1 Score: 102 bits (254), Expect = 6.940e-23 Identity = 60/137 (43.80%), Postives = 73/137 (53.28%), Query Frame = 1
Query: 7 DDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIV---------------------LQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWC----------GRNLLGQTL 324
DDV+LFW P SAFSQWT S F V Y+ EQFMM KA + G+ AKFSQN++++ LL+TG R LAEASP D +WGIG+SAC P AS W G +L+G TL
Sbjct: 555 DDVLLFWKPPSAFSQWTPSAFDALGVRYSCGEQFMMPEKAKLFGDITSYDKIIAATDPKTHKDRAVGSYAKFSQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPEASVSSKWAASDQPPLLEHGPDLVGGTL 691
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A023BT90_9FLAO (NADAR domain-containing protein n=1 Tax=Aquimarina atlantica TaxID=1317122 RepID=A0A023BT90_9FLAO) HSP 1 Score: 95.1 bits (235), Expect = 3.810e-22 Identity = 56/149 (37.58%), Postives = 72/149 (48.32%), Query Frame = 1
Query: 34 RSAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQDL 357
+S FSQW +S F VD V Y E +MMA KA IV QG + KFSQ NE++ LL TG R + EASP D +WGIG+S + +A +P+ W G+NLLG L RD L+Q+L
Sbjct: 36 KSCFSQWWESSFKVDNVNYKTAEHWMMAEKARLFNDIEIIEEIIKSSHPMEAKQLGRKVKNFDPKVWDEHKFEIVKQGNIYKFSQKNELKDFLLNTGKRIIVEASPRDRIWGIGMSENNEKAENPNLWRGQNLLGFALMEVRDELKQEL 184
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1Q9U2V4_9ACTN (NADAR domain-containing protein n=1 Tax=Actinomadura sp. CNU-125 TaxID=1904961 RepID=A0A1Q9U2V4_9ACTN) HSP 1 Score: 89.0 bits (219), Expect = 7.320e-20 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 130 IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
IV++G AKF+Q+ ++R L TG+R LAEASP D +WGIGL+A DPRA PD+W GRNLLGQ L + R L
Sbjct: 101 IVVRGNAAKFAQHPDLRTFLAGTGERVLAEASPRDRIWGIGLTADDPRAERPDAWRGRNLLGQALMAVRSSL 172
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1G9E2G0_9ACTN (NADAR domain-containing protein n=1 Tax=Glycomyces sambucus TaxID=380244 RepID=A0A1G9E2G0_9ACTN) HSP 1 Score: 88.6 bits (218), Expect = 8.950e-20 Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILR 348
+T++ A + IV++G + KF Q+ E+ LL TGDR L EASP D +WGIGL+ DPRA+SPD+W G NLLG+ L AR+ LR
Sbjct: 82 FTQEAWEAERYGIVVRGNVLKFGQDPELLAFLLGTGDRVLVEASPVDRIWGIGLADDDPRAASPDTWRGLNLLGKALVEARERLR 166
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A8J3Z948_9ACTN (NADAR domain-containing protein n=2 Tax=Virgisporangium aurantiacum TaxID=175570 RepID=A0A8J3Z948_9ACTN) HSP 1 Score: 88.6 bits (218), Expect = 9.170e-20 Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQD 354
+ E +A++ IV+ G++AKF Q++++R LL TGDR L EASP D +WGIGL+A D RA SP+ W G NLLG L AR LR+D
Sbjct: 80 FDEDRWVAARYDIVVAGSVAKFGQHDDLRAYLLGTGDRVLVEASPLDRVWGIGLTADDERARSPERWEGLNLLGYALMDARTKLRED 166
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1H9VKP3_9PSEU (NADAR domain-containing protein n=2 Tax=Actinokineospora TaxID=39845 RepID=A0A1H9VKP3_9PSEU) HSP 1 Score: 88.2 bits (217), Expect = 1.360e-19 Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 130 IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
IVL G++AKF QN ++R LL TG R L EASP D +WGIGL+A DPRA P W G NLLG+ L ARDIL
Sbjct: 97 IVLAGSVAKFEQNPDLRAYLLGTGQRVLVEASPLDAVWGIGLTADDPRAEDPTQWPGLNLLGRALGQARDIL 168
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A7X0LRQ6_9ACTN (NADAR domain-containing protein n=2 Tax=Streptomyces candidus TaxID=67283 RepID=A0A7X0LRQ6_9ACTN) HSP 1 Score: 87.8 bits (216), Expect = 2.850e-19 Identity = 55/144 (38.19%), Postives = 69/144 (47.92%), Query Frame = 1
Query: 37 SAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
S FSQW +SPFTVD V Y E +MMA KA IV++G + KF+++ ++ LL TG R L EASP D +WGIGL+A DPRA+ P W G NLLG L R+ L
Sbjct: 36 SVFSQWWESPFTVDGVRYATAEHWMMARKAELFGDEEARRAALEATSPAAAKKAGRLVRGFDDALWQDRRFDIVVEGNVHKFTRHPDLGAYLLGTGGRVLVEASPVDRVWGIGLTADDPRAADPAQWRGHNLLGFALMEVRNRL 179
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A7W7T502_9PSEU (NADAR domain-containing protein n=2 Tax=Saccharothrix violaceirubra TaxID=413306 RepID=A0A7W7T502_9PSEU) HSP 1 Score: 87.8 bits (216), Expect = 2.850e-19 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQ 351
++++ + + IV+ G++AKF Q +++R LL TGDR L EASP D +WGIGL+A DPRA+ P W G NLLG+ L AR +LR+
Sbjct: 101 FSDEVWVEHRYGIVVDGSVAKFGQRDDLRAFLLGTGDRVLVEASPVDPVWGIGLAADDPRATDPARWPGLNLLGRALGDARTLLRE 186 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1074.696.1 >prot_D-herbacea_F_contig1074.696.1 ID=prot_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=121bp ICDDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIVLQGTLback to top mRNA from alignment at D-herbacea_F_contig1074:43289..43651- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1074.696.1 ID=mRNA_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=363bp|location=Sequence derived from alignment at D-herbacea_F_contig1074:43289..43651- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1074:43289..43651- >mRNA_D-herbacea_F_contig1074.696.1 ID=mRNA_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=726bp|location=Sequence derived from alignment at D-herbacea_F_contig1074:43289..43651- (Desmarestia herbacea DmunF female)back to top |