mRNA_D-herbacea_F_contig1074.696.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1074.696.1
Unique NamemRNA_D-herbacea_F_contig1074.696.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A6H5JV26_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV26_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.560e-24
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    7 DDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWC--GRNLLGQTLESARDILR 348
            DDV+LFW   S FSQWT S F V  V Y+            IVL G+ AKF+QN++++  LL+TG R LAEASP D +WGIG+ AC P AS    W   G+NLLG+ L   R +LR
Sbjct:   76 DDVLLFWKSPSVFSQWTPSAFDVLGVRYSCE----------IVLTGSYAKFAQNHDMKHHLLETGTRLLAEASPFDRVWGIGMFACFPEASVSSKWAASGKNLLGKALMEVRRLLR 181          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: UPI00137870CE (NADAR family protein n=1 Tax=Streptomyces boluensis TaxID=1775135 RepID=UPI00137870CE)

HSP 1 Score: 99.8 bits (247), Expect = 8.270e-24
Identity = 61/145 (42.07%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   37 SAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILR 348
            S  SQW QSPFTVD VEY   E +MMA+KA                                          IV++G++ KF  + E+R  LL TGDR L EASP D +WGIGL+A DPRA  P  W G NLLG  L  AR  LR
Sbjct:   52 SCLSQWWQSPFTVDGVEYATAEHWMMAAKARLFDDPEAERMATAATSPGAAKKAGRLVRGFDESRWERERFGIVVEGSVHKFGAHPELRDYLLGTGDRVLVEASPRDRIWGIGLTATDPRAEHPSQWRGTNLLGFALMEARGRLR 196          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A6H5KC07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC07_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.940e-23
Identity = 60/137 (43.80%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    7 DDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIV---------------------LQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWC----------GRNLLGQTL 324
            DDV+LFW P SAFSQWT S F    V Y+  EQFMM  KA +                        G+ AKFSQN++++  LL+TG R LAEASP D +WGIG+SAC P AS    W           G +L+G TL
Sbjct:  555 DDVLLFWKPPSAFSQWTPSAFDALGVRYSCGEQFMMPEKAKLFGDITSYDKIIAATDPKTHKDRAVGSYAKFSQNHDMKHHLLETGTRLLAEASPFDRVWGIGMSACFPEASVSSKWAASDQPPLLEHGPDLVGGTL 691          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A023BT90_9FLAO (NADAR domain-containing protein n=1 Tax=Aquimarina atlantica TaxID=1317122 RepID=A0A023BT90_9FLAO)

HSP 1 Score: 95.1 bits (235), Expect = 3.810e-22
Identity = 56/149 (37.58%), Postives = 72/149 (48.32%), Query Frame = 1
Query:   34 RSAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQDL 357
            +S FSQW +S F VD V Y   E +MMA KA                                          IV QG + KFSQ NE++  LL TG R + EASP D +WGIG+S  + +A +P+ W G+NLLG  L   RD L+Q+L
Sbjct:   36 KSCFSQWWESSFKVDNVNYKTAEHWMMAEKARLFNDIEIIEEIIKSSHPMEAKQLGRKVKNFDPKVWDEHKFEIVKQGNIYKFSQKNELKDFLLNTGKRIIVEASPRDRIWGIGMSENNEKAENPNLWRGQNLLGFALMEVRDELKQEL 184          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1Q9U2V4_9ACTN (NADAR domain-containing protein n=1 Tax=Actinomadura sp. CNU-125 TaxID=1904961 RepID=A0A1Q9U2V4_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 7.320e-20
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  130 IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
            IV++G  AKF+Q+ ++R  L  TG+R LAEASP D +WGIGL+A DPRA  PD+W GRNLLGQ L + R  L
Sbjct:  101 IVVRGNAAKFAQHPDLRTFLAGTGERVLAEASPRDRIWGIGLTADDPRAERPDAWRGRNLLGQALMAVRSSL 172          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1G9E2G0_9ACTN (NADAR domain-containing protein n=1 Tax=Glycomyces sambucus TaxID=380244 RepID=A0A1G9E2G0_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 8.950e-20
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILR 348
            +T++   A +  IV++G + KF Q+ E+   LL TGDR L EASP D +WGIGL+  DPRA+SPD+W G NLLG+ L  AR+ LR
Sbjct:   82 FTQEAWEAERYGIVVRGNVLKFGQDPELLAFLLGTGDRVLVEASPVDRIWGIGLADDDPRAASPDTWRGLNLLGKALVEARERLR 166          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A8J3Z948_9ACTN (NADAR domain-containing protein n=2 Tax=Virgisporangium aurantiacum TaxID=175570 RepID=A0A8J3Z948_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 9.170e-20
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQD 354
            + E   +A++  IV+ G++AKF Q++++R  LL TGDR L EASP D +WGIGL+A D RA SP+ W G NLLG  L  AR  LR+D
Sbjct:   80 FDEDRWVAARYDIVVAGSVAKFGQHDDLRAYLLGTGDRVLVEASPLDRVWGIGLTADDERARSPERWEGLNLLGYALMDARTKLRED 166          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A1H9VKP3_9PSEU (NADAR domain-containing protein n=2 Tax=Actinokineospora TaxID=39845 RepID=A0A1H9VKP3_9PSEU)

HSP 1 Score: 88.2 bits (217), Expect = 1.360e-19
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  130 IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
            IVL G++AKF QN ++R  LL TG R L EASP D +WGIGL+A DPRA  P  W G NLLG+ L  ARDIL
Sbjct:   97 IVLAGSVAKFEQNPDLRAYLLGTGQRVLVEASPLDAVWGIGLTADDPRAEDPTQWPGLNLLGRALGQARDIL 168          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A7X0LRQ6_9ACTN (NADAR domain-containing protein n=2 Tax=Streptomyces candidus TaxID=67283 RepID=A0A7X0LRQ6_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 2.850e-19
Identity = 55/144 (38.19%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   37 SAFSQWTQSPFTVDLVEYNYTEQFMMASKAL-----------------------------------------IVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDIL 345
            S FSQW +SPFTVD V Y   E +MMA KA                                          IV++G + KF+++ ++   LL TG R L EASP D +WGIGL+A DPRA+ P  W G NLLG  L   R+ L
Sbjct:   36 SVFSQWWESPFTVDGVRYATAEHWMMARKAELFGDEEARRAALEATSPAAAKKAGRLVRGFDDALWQDRRFDIVVEGNVHKFTRHPDLGAYLLGTGGRVLVEASPVDRVWGIGLTADDPRAADPAQWRGHNLLGFALMEVRNRL 179          
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Match: A0A7W7T502_9PSEU (NADAR domain-containing protein n=2 Tax=Saccharothrix violaceirubra TaxID=413306 RepID=A0A7W7T502_9PSEU)

HSP 1 Score: 87.8 bits (216), Expect = 2.850e-19
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   94 YTEQFMMASKALIVLQGTLAKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCGRNLLGQTLESARDILRQ 351
            ++++  +  +  IV+ G++AKF Q +++R  LL TGDR L EASP D +WGIGL+A DPRA+ P  W G NLLG+ L  AR +LR+
Sbjct:  101 FSDEVWVEHRYGIVVDGSVAKFGQRDDLRAFLLGTGDRVLVEASPVDPVWGIGLAADDPRATDPARWPGLNLLGRALGDARTLLRE 186          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1074.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV26_9PHAE7.560e-2449.14Reverse transcriptase domain-containing protein (F... [more]
UPI00137870CE8.270e-2442.07NADAR family protein n=1 Tax=Streptomyces boluensi... [more]
A0A6H5KC07_9PHAE6.940e-2343.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A023BT90_9FLAO3.810e-2237.58NADAR domain-containing protein n=1 Tax=Aquimarina... [more]
A0A1Q9U2V4_9ACTN7.320e-2058.33NADAR domain-containing protein n=1 Tax=Actinomadu... [more]
A0A1G9E2G0_9ACTN8.950e-2051.76NADAR domain-containing protein n=1 Tax=Glycomyces... [more]
A0A8J3Z948_9ACTN9.170e-2051.72NADAR domain-containing protein n=2 Tax=Virgispora... [more]
A0A1H9VKP3_9PSEU1.360e-1961.11NADAR domain-containing protein n=2 Tax=Actinokine... [more]
A0A7X0LRQ6_9ACTN2.850e-1938.19NADAR domain-containing protein n=2 Tax=Streptomyc... [more]
A0A7W7T502_9PSEU2.850e-1948.84NADAR domain-containing protein n=2 Tax=Saccharoth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1074contigD-herbacea_F_contig1074:43289..43651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D7FYJ3
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.8711295-CDS-D-herbacea_F_contig1074:43288..436511622927482.8711295-CDS-D-herbacea_F_contig1074:43288..43651Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1074 43289..43651 -
1690790194.7642221-CDS-D-herbacea_F_contig1074:43288..436511690790194.7642221-CDS-D-herbacea_F_contig1074:43288..43651Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1074 43289..43651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1074.696.1prot_D-herbacea_F_contig1074.696.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1074 43289..43651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1074.696.1

>prot_D-herbacea_F_contig1074.696.1 ID=prot_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=121bp
ICDDVVLFWYPRSAFSQWTQSPFTVDLVEYNYTEQFMMASKALIVLQGTL
AKFSQNNEIRFALLQTGDRRLAEASPHDNLWGIGLSACDPRASSPDSWCG
RNLLGQTLESARDILRQDLNT
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mRNA from alignment at D-herbacea_F_contig1074:43289..43651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1074.696.1 ID=mRNA_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=363bp|location=Sequence derived from alignment at D-herbacea_F_contig1074:43289..43651- (Desmarestia herbacea DmunF female)
ATCTGTGATGATGTCGTCCTTTTCTGGTATCCCCGTTCGGCCTTCTCCCA ATGGACGCAATCACCGTTCACCGTAGACCTCGTCGAATATAATTACACTG AACAGTTCATGATGGCCTCAAAAGCACTCATTGTATTACAGGGGACCCTA GCAAAATTCTCCCAAAACAACGAGATACGCTTCGCCCTCCTCCAAACCGG CGACCGCCGCCTCGCCGAAGCAAGCCCTCACGATAACCTGTGGGGCATCG GACTGAGCGCCTGCGACCCGCGCGCCTCTTCCCCTGATTCCTGGTGCGGT AGAAATCTGCTCGGTCAGACCTTAGAGAGCGCCCGCGACATTCTTCGCCA AGATTTAAATACA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1074:43289..43651-

>mRNA_D-herbacea_F_contig1074.696.1 ID=mRNA_D-herbacea_F_contig1074.696.1|Name=mRNA_D-herbacea_F_contig1074.696.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=726bp|location=Sequence derived from alignment at D-herbacea_F_contig1074:43289..43651- (Desmarestia herbacea DmunF female)
ATCTGTGATGATGTCGTCCTTTTCTGGTATCCCCGTTCGGCCTTCTCCCA
ATGGACGCAATCACCGTTCACCGTAGACCTCGTCGAATATAATTACACTG
AACAGTTCATGATGGCCTCAAAAGCACTCATTGTATTACAGGGGACCCTA
GCAAAATTCTCCCAAAACAACGAGATACGCTTCGCCCTCCTCCAAACCGG
CGACCGCCGCCTCGCCGAAGCAAGCCCTCACGATAACCTGTGGGGCATCG
GACTGAGCGCCTGCGACCCGCGCGCCTCTTCCCCTGATTCCTGGTGCGGT
AGAAATCTGCTCGGTCAGACCTTAGAGAGCGCCCGCGACATTCTTCGCCA
AGATTTAAATACAATCTGTGATGATGTCGTCCTTTTCTGGTATCCCCGTT
CGGCCTTCTCCCAATGGACGCAATCACCGTTCACCGTAGACCTCGTCGAA
TATAATTACACTGAACAGTTCATGATGGCCTCAAAAGCACTCATTGTATT
ACAGGGGACCCTAGCAAAATTCTCCCAAAACAACGAGATACGCTTCGCCC
TCCTCCAAACCGGCGACCGCCGCCTCGCCGAAGCAAGCCCTCACGATAAC
CTGTGGGGCATCGGACTGAGCGCCTGCGACCCGCGCGCCTCTTCCCCTGA
TTCCTGGTGCGGTAGAAATCTGCTCGGTCAGACCTTAGAGAGCGCCCGCG
ACATTCTTCGCCAAGATTTAAATACA
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