mRNA_D-herbacea_F_contig1073.693.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1073.693.1
Unique NamemRNA_D-herbacea_F_contig1073.693.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1073.693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1073contigD-herbacea_F_contig1073:40443..41104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size480
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.9227355-UTR-D-herbacea_F_contig1073:40442..406241622927481.9227355-UTR-D-herbacea_F_contig1073:40442..40624Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1073 40443..40624 +
1690790194.3299448-UTR-D-herbacea_F_contig1073:40442..406241690790194.3299448-UTR-D-herbacea_F_contig1073:40442..40624Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1073 40443..40624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.9361823-CDS-D-herbacea_F_contig1073:40624..411041622927481.9361823-CDS-D-herbacea_F_contig1073:40624..41104Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1073 40625..41104 +
1690790194.3417785-CDS-D-herbacea_F_contig1073:40624..411041690790194.3417785-CDS-D-herbacea_F_contig1073:40624..41104Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1073 40625..41104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1073.693.1prot_D-herbacea_F_contig1073.693.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1073 40625..41104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1073.693.1

>prot_D-herbacea_F_contig1073.693.1 ID=prot_D-herbacea_F_contig1073.693.1|Name=mRNA_D-herbacea_F_contig1073.693.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=160bp
MFCVVQCYSVVCATSRSCCVASVKKNFCVFFQLRSGNVFFVLCYDISFRR
ETVYCFCCTILPEDMRKNGAGKGENGVGLEKRGYYVEERSTAHVEMVLLW
LSVVLVLAVVARVSACCGWAGLVVMAVATTQPEIRQWLSARDDVISGLFF
AYRRLLLWRE
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mRNA from alignment at D-herbacea_F_contig1073:40443..41104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1073.693.1 ID=mRNA_D-herbacea_F_contig1073.693.1|Name=mRNA_D-herbacea_F_contig1073.693.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=662bp|location=Sequence derived from alignment at D-herbacea_F_contig1073:40443..41104+ (Desmarestia herbacea DmunF female)
GGTGAGCTAGCTCATGGGGAACGAAAATAGCAGGCGTGCCGAATCATTTT
TAGCTCTCGTCTAGAGCTCTAGTTTAAACAAGCCGACTTTTTTGGCTCCG
TATCACCGTTAGTCTGATTTTCCCGGTATGATATTATGTCCCTGCGTATT
GATTGGTTGGCGGGATCGAAACCCCGTGCTGAATGTTTTGTGTCGTACAA
TGTTATTCAGTTGTTTGCGCAACCAGCCGTTCCTGCTGTGTTGCTTCCGT
GAAGAAAAACTTTTGTGTGTTCTTTCAGCTACGTAGCGGAAACGTATTTT
TTGTTTTGTGCTATGATATATCGTTTCGAAGAGAGACAGTGTACTGTTTT
TGCTGTACGATACTTCCTGAAGACATGCGTAAAAACGGCGCTGGTAAGGG
GGAAAATGGCGTAGGGCTGGAAAAACGGGGATACTACGTCGAAGAGAGGA
GTACCGCACATGTCGAGATGGTATTATTGTGGCTCTCGGTAGTGCTGGTG
TTGGCTGTTGTGGCACGCGTCTCTGCTTGTTGCGGCTGGGCGGGCCTGGT
CGTTATGGCGGTGGCAACGACCCAGCCAGAAATACGTCAATGGTTGTCAG
CGCGGGATGATGTTATTAGTGGGTTGTTTTTCGCATACCGAAGATTGTTG
TTGTGGCGGGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1073:40443..41104+

>mRNA_D-herbacea_F_contig1073.693.1 ID=mRNA_D-herbacea_F_contig1073.693.1|Name=mRNA_D-herbacea_F_contig1073.693.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=960bp|location=Sequence derived from alignment at D-herbacea_F_contig1073:40443..41104+ (Desmarestia herbacea DmunF female)
ATGTTTTGTGTCGTACAATGTTATTCAGTTGTTTGCGCAACCAGCCGTTC
CTGCTGTGTTGCTTCCGTGAAGAAAAACTTTTGTGTGTTCTTTCAGCTAC
GTAGCGGAAACGTATTTTTTGTTTTGTGCTATGATATATCGTTTCGAAGA
GAGACAGTGTACTGTTTTTGCTGTACGATACTTCCTGAAGACATGCGTAA
AAACGGCGCTGGTAAGGGGGAAAATGGCGTAGGGCTGGAAAAACGGGGAT
ACTACGTCGAAGAGAGGAGTACCGCACATGTCGAGATGGTATTATTGTGG
CTCTCGGTAGTGCTGGTGTTGGCTGTTGTGGCACGCGTCTCTGCTTGTTG
CGGCTGGGCGGGCCTGGTCGTTATGGCGGTGGCAACGACCCAGCCAGAAA
TACGTCAATGGTTGTCAGCGCGGGATGATGTTATTAGTGGGTTGTTTTTC
GCATACCGAAGATTGTTGTTGTGGCGGGAGATGTTTTGTGTCGTACAATG
TTATTCAGTTGTTTGCGCAACCAGCCGTTCCTGCTGTGTTGCTTCCGTGA
AGAAAAACTTTTGTGTGTTCTTTCAGCTACGTAGCGGAAACGTATTTTTT
GTTTTGTGCTATGATATATCGTTTCGAAGAGAGACAGTGTACTGTTTTTG
CTGTACGATACTTCCTGAAGACATGCGTAAAAACGGCGCTGGTAAGGGGG
AAAATGGCGTAGGGCTGGAAAAACGGGGATACTACGTCGAAGAGAGGAGT
ACCGCACATGTCGAGATGGTATTATTGTGGCTCTCGGTAGTGCTGGTGTT
GGCTGTTGTGGCACGCGTCTCTGCTTGTTGCGGCTGGGCGGGCCTGGTCG
TTATGGCGGTGGCAACGACCCAGCCAGAAATACGTCAATGGTTGTCAGCG
CGGGATGATGTTATTAGTGGGTTGTTTTTCGCATACCGAAGATTGTTGTT
GTGGCGGGAG
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