mRNA_D-herbacea_F_contig107.688.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.688.1
Unique NamemRNA_D-herbacea_F_contig107.688.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:858378..861870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size692
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.688.1prot_D-herbacea_F_contig107.688.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 858379..861870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927481.7259555-CDS-D-herbacea_F_contig107:858378..8586041622927481.7259555-CDS-D-herbacea_F_contig107:858378..858604Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 858379..858604 -
1690790194.2143972-CDS-D-herbacea_F_contig107:858378..8586041690790194.2143972-CDS-D-herbacea_F_contig107:858378..858604Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 858379..858604 -
1622927481.736568-CDS-D-herbacea_F_contig107:859058..8591551622927481.736568-CDS-D-herbacea_F_contig107:859058..859155Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 859059..859155 -
1690790194.2238297-CDS-D-herbacea_F_contig107:859058..8591551690790194.2238297-CDS-D-herbacea_F_contig107:859058..859155Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 859059..859155 -
1622927481.7482934-CDS-D-herbacea_F_contig107:861503..8618701622927481.7482934-CDS-D-herbacea_F_contig107:861503..861870Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 861504..861870 -
1690790194.232786-CDS-D-herbacea_F_contig107:861503..8618701690790194.232786-CDS-D-herbacea_F_contig107:861503..861870Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 861504..861870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.688.1

>prot_D-herbacea_F_contig107.688.1 ID=prot_D-herbacea_F_contig107.688.1|Name=mRNA_D-herbacea_F_contig107.688.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=230bp
PQTANPKLSCSCLRTSRKNMAESLLLHMSLSAKYIINLLLEGHAKGQVSQ
KELLQQTQNVVCVYVCLGIKASCMLSFKDDEEAAAVSLKDVVVPGFLKWC
EEHECTLPDWHTQKRMGRSTLKGDPVLFMEGKKAWEMFTTAMRSMEKDYN
YIWDKFVRGRIRRHGPSRQSDEDSCKCLLDHLYWLSRKQAIIKSASVDRR
GKELVGELNSKDPAASGKENKGEGGSVENG
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mRNA from alignment at D-herbacea_F_contig107:858378..861870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.688.1 ID=mRNA_D-herbacea_F_contig107.688.1|Name=mRNA_D-herbacea_F_contig107.688.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3493bp|location=Sequence derived from alignment at D-herbacea_F_contig107:858378..861870- (Desmarestia herbacea DmunF female)
CCACAAACAGCAAACCCAAAGCTCAGCTGTAGCTGTTTGCGGACCTCAAG
GAAGAATATGGCTGAATCTCTGCTGCTGCACATGAGCCTCTCCGCGAAGT
ACATCATTAACCTCCTTCTCGAAGGACATGCAAAAGGACAGGTCTCGCAA
AAAGAGCTTCTCCAACAGACGCAGAATGTAGTGTGTGTCTACGTCTGCCT
TGGGATCAAGGCCAGCTGCATGTTGTCGTTCAAGGACGACGAAGAAGCGG
CAGCCGTGAGTCTTAAAGACGTCGTGGTGCCTGGGTTCCTCAAATGGTGT
GAGGAACACGAGTGTACGCTCCCTGATTGGCACACCCAGAAAAGGATGGG
CCGCTCCACGTTAAAAGGTGAGGGAAAGGGACATCTACTACTTGTACAGA
GACAGCAGAAACGAACAGCAGCGAGTGGTGCTGTTACACGGTGGTGGTCG
TTAGTCGTTACGTAGTCGTTGGTAGCGGACAACATCCCATCCGTACTGTT
GTACTGCCCCTACCCTGAGTAGTGATATGTATGGGGAAAGATCTTCAGCG
TGATGGGGCATGAGCCTGTGTAGCGCCTGATACAGAGCAGTGCGGACATG
CCGGTGTGAACGTGAACGATATATGTGTGGTTGGTGTGGCCATACACGTA
TCTGTCTGCTACTGCTACTACTACTGTAACTGTTGCTGCTACCTCGTATC
GTACTGCTGCTACTGCCGCTGGTGCGGTGACTGCACGAATTGTAGACTGC
TGTGTCGAAAACGATTGCTGTAATAAGCAGTGAACTATGAAAGTACCATG
GCGCTAGGTATGGTCCTGCCCTCGTTTTGACGCCAGTCTGTGATATTTTT
GCTTTCCGTGAAGGTTCAACGCTTGCCAACTCTATTTCAAGTCAAGCCTT
CTTCCTTTCGCAACACAAAAATTTAAAATGTACCAAGAAGGTCAAACTCA
GCTTTTGCTGTTTGATAAATATCCAAGAACGGACCAATTCTCGATTTCCT
TTTTGCAAGTAGGTAGCAACACTTAAATCAAAATAAAGTTTCGTCTTTTC
GGAACGCTAAAAAAAAGCCAAGTCAAAACTTATCATAGCTTGACACAAAC
ATTCACAGTTCAAGAAGGGAACAACCGAACAACACTCCTTTGAAAACTTC
ATGCGGCGGGACCTCTCTCTTAACAAGATACGAAGTACACAGCCATGTTG
GATTGTCAAAATCACACAACCTCTGATCAAAAACGAACACAGAAAAGCAC
ACAAGAACGATGCCCGAAACACAAACGCGGACCAGGCCCGCCCACAGAAC
CATGCAGCACACAGGGGTGGTTTGGGCGCCGCACGCCGCTCCTGGCCCGA
GCAATGACAAACGCGAAATGCAAGCGCTATATCAGCATATAATATGGTGC
AAGCGGAACTTTGCGGACTATGATACTCCCGCCGCACGGCGAACACATGA
CACTATAATCACAAAACCACATCACAAGAGCACAAAAGGAGACTCAAATC
ACATCGTCATAGATCCACACCGCGCGGCGCTCGCGAGGGGTCAGCCTCCT
CCAAGGTCGAGACGCAGCGAGAAACAAAGCAACACACACAACTGTAGTAG
CATACGAATTCATGTTCCGGTCAACTTGGAGGAATTTCCAACAAGGTGTG
TATGTTACTTGAAAAAAGCATTTCGATTAGCATATCATTTGCCTCTTCTT
ACTTGTTTACTGTTTTTCCTGCTGTTTTTACCACACACAGCAGCCCCACC
TATCCCAATACTAATACTACTATCATACTTCTACTACTAATGTTGTATAG
TAGGTATTTATGTATTGTAGCTGACGAGTGGGAAACTGTAGGGAGGGCAA
GCTGTATTCTACATGCAACACCACGCCGTGAATTCGTTTTTTCAGTATGT
ACCACGAGACTACGAGTGAGTGATCATGTGCAGGATACAACAGCAGCGCA
GTACTACTGCAGCAGTAGTATATAGTAGAGTATGTACAGGATACAATAGC
AGCGCAATACTACTGTAGTTCAAGTATAAATAGCAGTTGTATTATATAGT
AGTGGTAGTAGTAAAATATGCGCGTTTTGTTATCGTGTTGGGCGTCGGGC
TTGGATCTTACATCACAACGGGTTCTAAGCGCAACAGCCAACGTTGAGTT
CGTGTTTTTTACACGCATGCAGCACACACAACAAACGCTCCTCCTCCTCA
CGCACACCAGCACCGCCAGCACCACTATGGATGGAGCGCACTGCTGACGA
GGTTGGGTTGGGTTGGGTTGGGTTAGGATGTCACTCACCCTTCGAGGGCA
CACTGCACGGGCAACGCCGTGGTTGCCCACTGGTAACATACTTCTACATA
CTTGTCACGAGGGCCCCTAATAAATAGACCCAAAACGCTGATTGACGCGT
GTATTGCGAGACAGACACCGCGTGAATCCCGGACCTCATTCGTTTTTACC
ATGCGGCGGCAACAGTACAATGCTACATTTTCATTCTGGGGGGGGGGGGG
GGGGGGTAGGATACTTGCACTCCCGTTGCTCCTCCTTGTTTTGGGCCTAT
TTATTATGGGCCTCTGTAAAATAGTGATATCATGTACCAGGTACAGGATA
GAGTACGAAGTACATGCTTGTGAGAACGACTTGTGCTCTTCAAATGCACA
GAAGGTATACACGCTGACATGATGTATTCGCCGATCCCGAAACGTAACTT
GGCTTCGCCGCGCAGGCGACCCCGTACTGTTCATGGAGGGAAAGAAGGCG
TGGGAAATGTTTACCACGGCGATGCGAAGTATGGAGAAGGACTACAACTA
TATCTGGGACAAGTAAGTTTTTAACACAATCAAACGGGCGTCCGTACCGT
GTCATTGCGCACAGATATGGCGCCGTCGCATTTTTTTTGTTCTGGGATCT
CGAGGAAACGCGTGGCTAGGAGTTTCGTTCCCCCGACAGTACAGTGGCAG
GAGATACATAGGTTAGCAGGTTGCGTTATGAACACCTGCTGTAGCTGTAT
AAGTATATTTCTGTAGAGAACAGCACGACAGTGGAGCCGAATTTTGTATA
CGAGTGAAGTTAGGTGACATATTGATGATGCCGCTGGTATTGCCGGGGTT
CTCTTCCACCTCGACCGTCACCCAGCTCGCCTTCAAAGTGCTTTGTTCGT
CACTCGTACGGAAACTGAATAGTTCAGAGTGGCGTGGACGTCAACCGGGT
TGTGTGAAAAAAAATATATGTGTAGTCAGAGTCCTCCTTCATTTTTGCCC
GGCCCTCCCTATCCAGGTTCGTCCGAGGCCGTATCAGACGTCACGGTCCG
TCAAGACAAAGTGACGAAGATTCTTGCAAGTGCCTCCTGGACCACCTCTA
CTGGTTGTCAAGAAAACAAGCGATAATCAAGTCGGCATCAGTGGACAGGA
GGGGAAAAGAGTTAGTCGGAGAGCTAAATTCTAAGGACCCAGCGGCGTCA
GGGAAGGAAAACAAGGGAGAAGGGGGGTCCGTGGAGAATGGGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:858378..861870-

>mRNA_D-herbacea_F_contig107.688.1 ID=mRNA_D-herbacea_F_contig107.688.1|Name=mRNA_D-herbacea_F_contig107.688.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1380bp|location=Sequence derived from alignment at D-herbacea_F_contig107:858378..861870- (Desmarestia herbacea DmunF female)
CCACAAACAGCAAACCCAAAGCTCAGCTGTAGCTGTTTGCGGACCTCAAG
GAAGAATATGGCTGAATCTCTGCTGCTGCACATGAGCCTCTCCGCGAAGT
ACATCATTAACCTCCTTCTCGAAGGACATGCAAAAGGACAGGTCTCGCAA
AAAGAGCTTCTCCAACAGACGCAGAATGTAGTGTGTGTCTACGTCTGCCT
TGGGATCAAGGCCAGCTGCATGTTGTCGTTCAAGGACGACGAAGAAGCGG
CAGCCGTGAGTCTTAAAGACGTCGTGGTGCCTGGGTTCCTCAAATGGTGT
GAGGAACACGAGTGTACGCTCCCTGATTGGCACACCCAGAAAAGGATGGG
CCGCTCCACGTTAAAAGCCACAAACAGCAAACCCAAAGCTCAGCTGTAGC
TGTTTGCGGACCTCAAGGAAGAATATGGCTGAATCTCTGCTGCTGCACAT
GAGCCTCTCCGCGAAGTACATCATTAACCTCCTTCTCGAAGGACATGCAA
AAGGACAGGTCTCGCAAAAAGAGCTTCTCCAACAGACGCAGAATGTAGTG
TGTGTCTACGTCTGCCTTGGGATCAAGGCCAGCTGCATGTTGTCGTTCAA
GGACGACGAAGAAGCGGCAGCCGTGAGTCTTAAAGACGTCGTGGTGCCTG
GGTTCCTCAAATGGTGTGAGGAACACGAGTGTACGCTCCCTGATTGGCAC
ACCCAGAAAAGGATGGGCCGCTCCACGTTAAAAGGCGACCCCGTACTGTT
CATGGAGGGAAAGAAGGCGTGGGAAATGTTTACCACGGCGATGCGAAGTA
TGGAGAAGGACTACAACTATATCTGGGACAAGCGACCCCGTACTGTTCAT
GGAGGGAAAGAAGGCGTGGGAAATGTTTACCACGGCGATGCGAAGTATGG
AGAAGGACTACAACTATATCTGGGACAAGTTCGTCCGAGGCCGTATCAGA
CGTCACGGTCCGTCAAGACAAAGTGACGAAGATTCTTGCAAGTGCCTCCT
GGACCACCTCTACTGGTTGTCAAGAAAACAAGCGATAATCAAGTCGGCAT
CAGTGGACAGGAGGGGAAAAGAGTTAGTCGGAGAGCTAAATTCTAAGGAC
CCAGCGGCGTCAGGGAAGGAAAACAAGGGAGAAGGGGGGTCCGTGGAGAA
TGGGGTTCGTCCGAGGCCGTATCAGACGTCACGGTCCGTCAAGACAAAGT
GACGAAGATTCTTGCAAGTGCCTCCTGGACCACCTCTACTGGTTGTCAAG
AAAACAAGCGATAATCAAGTCGGCATCAGTGGACAGGAGGGGAAAAGAGT
TAGTCGGAGAGCTAAATTCTAAGGACCCAGCGGCGTCAGGGAAGGAAAAC
AAGGGAGAAGGGGGGTCCGTGGAGAATGGG
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