mRNA_D-herbacea_F_contig107.676.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig107.676.1
Unique NamemRNA_D-herbacea_F_contig107.676.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig107.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig107contigD-herbacea_F_contig107:382712..383533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927476.424944-CDS-D-herbacea_F_contig107:382713..3830071622927476.424944-CDS-D-herbacea_F_contig107:382713..383007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 382714..383007 -
1690790191.7361317-CDS-D-herbacea_F_contig107:382713..3830071690790191.7361317-CDS-D-herbacea_F_contig107:382713..383007Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 382714..383007 -
1622927476.438703-CDS-D-herbacea_F_contig107:383461..3835331622927476.438703-CDS-D-herbacea_F_contig107:383461..383533Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 383462..383533 -
1690790191.7473252-CDS-D-herbacea_F_contig107:383461..3835331690790191.7473252-CDS-D-herbacea_F_contig107:383461..383533Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig107 383462..383533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig107.676.1prot_D-herbacea_F_contig107.676.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig107 382714..383533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig107.676.1

>prot_D-herbacea_F_contig107.676.1 ID=prot_D-herbacea_F_contig107.676.1|Name=mRNA_D-herbacea_F_contig107.676.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=122bp
AFCAYCGGRLVAASANFCAYCGQRVIRSPDIVTERGMSPPPNSGLGLPHA
AQQQQQQQQQSAMSRAGVVAPHHHPGPIGGERGQQSGTVVVVVGGSGGMI
GQEQQPQQQPPLPAGGSSAATA
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mRNA from alignment at D-herbacea_F_contig107:382712..383533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig107.676.1 ID=mRNA_D-herbacea_F_contig107.676.1|Name=mRNA_D-herbacea_F_contig107.676.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=822bp|location=Sequence derived from alignment at D-herbacea_F_contig107:382712..383533- (Desmarestia herbacea DmunF female)
GCGTTTTGCGCGTACTGTGGGGGAAGGCTTGTGGCAGCCTCCGCTAACTT
CTGCGCGTATTGCGGGCAGCGGGTGAGAACTGATTTAAAGCGAACTGATT
TAAAGCGAAGGCTGTGTAGGGGGTGGGGGGTGTACGCATTTCATGCATGG
CCGAGGTCGTATGACCATAGACCCTCGCATCCCTACAATGCCTGGCTGGA
CGGAACACGCCGGGTTTTCACCGACCAGGCAGGGGGAGGGGGGGGGGGCA
CGATTTGCTGGTAAAGTAATGTTAAGAGAGCTAGTCAGCACAGCTTTGGG
GGAAAATTTTTTGTGTTACTTCGTAGCAAATGATTGACCACACCCCGTAG
ATGCACACTTTCTTGTCGTTTTTTGTTGGTCTACGAAGTATGCGTTTTTA
CGTGGGATACGAGATGAGGGAAAGAGGGAGAGCGAGAGAAATCATCGTCG
TTTATGGGCTGTGGGATGACCATGGGGGTGAGCGGGTAATCACTTTTCTG
CCGTCTCCCCGGCCCCCATCTCGCAGGTGATCCGAAGCCCGGACATTGTG
ACAGAGCGTGGCATGTCTCCTCCCCCTAACTCCGGCCTAGGTCTTCCCCA
CGCCGCACAGCAGCAGCAGCAACAACAACAACAATCCGCCATGTCCCGCG
CAGGGGTCGTCGCACCACATCACCACCCCGGTCCCATTGGAGGGGAGCGC
GGCCAACAATCGGGGACGGTTGTCGTTGTTGTCGGTGGTAGCGGCGGCAT
GATAGGCCAAGAGCAACAGCCACAGCAACAGCCACCCCTACCGGCCGGCG
GATCTTCCGCCGCCACCGCCGC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig107:382712..383533-

>mRNA_D-herbacea_F_contig107.676.1 ID=mRNA_D-herbacea_F_contig107.676.1|Name=mRNA_D-herbacea_F_contig107.676.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=732bp|location=Sequence derived from alignment at D-herbacea_F_contig107:382712..383533- (Desmarestia herbacea DmunF female)
GCGTTTTGCGCGTACTGTGGGGGAAGGCTTGTGGCAGCCTCCGCTAACTT
CTGCGCGTATTGCGGGCAGCGGGCGTTTTGCGCGTACTGTGGGGGAAGGC
TTGTGGCAGCCTCCGCTAACTTCTGCGCGTATTGCGGGCAGCGGGTGATC
CGAAGCCCGGACATTGTGACAGAGCGTGGCATGTCTCCTCCCCCTAACTC
CGGCCTAGGTCTTCCCCACGCCGCACAGCAGCAGCAGCAACAACAACAAC
AATCCGCCATGTCCCGCGCAGGGGTCGTCGCACCACATCACCACCCCGGT
CCCATTGGAGGGGAGCGCGGCCAACAATCGGGGACGGTTGTCGTTGTTGT
CGGTGGTAGCGGCGGCATGATAGGCCAAGAGCAACAGCCACAGCAACAGC
CACCCCTACCGGCCGGCGGATCTTCCGCCGCCACCGCCGTGATCCGAAGC
CCGGACATTGTGACAGAGCGTGGCATGTCTCCTCCCCCTAACTCCGGCCT
AGGTCTTCCCCACGCCGCACAGCAGCAGCAGCAACAACAACAACAATCCG
CCATGTCCCGCGCAGGGGTCGTCGCACCACATCACCACCCCGGTCCCATT
GGAGGGGAGCGCGGCCAACAATCGGGGACGGTTGTCGTTGTTGTCGGTGG
TAGCGGCGGCATGATAGGCCAAGAGCAACAGCCACAGCAACAGCCACCCC
TACCGGCCGGCGGATCTTCCGCCGCCACCGCC
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