mRNA_D-herbacea_F_contig1068.656.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1068.656.1
Unique NamemRNA_D-herbacea_F_contig1068.656.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1068.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1068contigD-herbacea_F_contig1068:4409..5696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size242
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1068.656.1prot_D-herbacea_F_contig1068.656.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1068 4409..5695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.1658988-CDS-D-herbacea_F_contig1068:4408..45011622927475.1658988-CDS-D-herbacea_F_contig1068:4408..4501Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 4409..4501 +
1690790191.0059056-CDS-D-herbacea_F_contig1068:4408..45011690790191.0059056-CDS-D-herbacea_F_contig1068:4408..4501Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 4409..4501 +
1622927475.1837535-CDS-D-herbacea_F_contig1068:5155..52631622927475.1837535-CDS-D-herbacea_F_contig1068:5155..5263Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 5156..5263 +
1690790191.0193722-CDS-D-herbacea_F_contig1068:5155..52631690790191.0193722-CDS-D-herbacea_F_contig1068:5155..5263Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 5156..5263 +
1622927475.198863-CDS-D-herbacea_F_contig1068:5656..56951622927475.198863-CDS-D-herbacea_F_contig1068:5656..5695Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 5657..5695 +
1690790191.0363662-CDS-D-herbacea_F_contig1068:5656..56951690790191.0363662-CDS-D-herbacea_F_contig1068:5656..5695Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1068 5657..5695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1068.656.1

>prot_D-herbacea_F_contig1068.656.1 ID=prot_D-herbacea_F_contig1068.656.1|Name=mRNA_D-herbacea_F_contig1068.656.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=80bp
DDEIDRVATLKTERLHIRLKAEAAAYIDGDKKAATEALDTLKRESSQELT
EMKSRGDKATADNAANVEKIAKLDRRLARQ
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mRNA from alignment at D-herbacea_F_contig1068:4409..5696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1068.656.1 ID=mRNA_D-herbacea_F_contig1068.656.1|Name=mRNA_D-herbacea_F_contig1068.656.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1288bp|location=Sequence derived from alignment at D-herbacea_F_contig1068:4409..5696+ (Desmarestia herbacea DmunF female)
GACGATGAGATTGACCGCGTGGCTACGCTGAAGACGGAAAGGTTGCACAT
CCGATTGAAGGCAGAGGCAGCCGCTTATATCGATGGCGATAAGGTGCTTC
TACCTTGCGTCTGATAGAGTTCCGTGTTGGCGTGCCGTGCCACGGTGGTG
GTGGTTGGTGTACGCAAGGACCCGGAGCACCTTGTTAGGCCCAAGATTTT
CGAGTTTTGATGGGCGACCTGAAATGTGGAATCACAGCGATTCGGCGCAT
CATGAGAGCCCTGAAGATCGTGCCCAGGGTGTTGATGTTGCTGCATTCGC
CCTTCTCGAACTTAGCAGTCAGTCGCCCAAACTAGGTTTCGACAAATGCC
TGTCCCAGGCAGTGGCTTGTTGCCTCAGACGCAAAGGTTGCTACGGCAAT
ACTGGGGTGATTAAAGCGCACTGTGCCTAGTCGTGTGACCGATGGCAGTC
TCGTTAGGTGCTATGATACCTACATGTGCAGCTGAAATGCCGCCGCCTGT
GAGCCTGTCGGAAAAAACGCACAGGCAGCATTCCATAGTGGGTGGAATGA
AACACAGCATATCTAGTGTGCAGGGTAAAACATGTACAGTAGTATTCTTG
ATCAACGTAGCCTGTCCTTAGGTAGTGCCCGCGTCGTAGGCTCGTGTCGC
CCCCCCCTCCCCCCCGTAGTCTTTGTGCAAACGCCCGGCGATACTTTCCG
CTGCTTCTTGTCTAACACCAATTTCACCCCACCCTCCCTGCTTGCAGAAA
GCGGCCACGGAGGCGCTGGATACATTGAAGAGGGAATCATCTCAAGAGCT
GACCGAAATGAAAAGCAGGGGCGACAAAGCTACAGCCGATAATGCGGCGA
ATGTGGTATGCCCGTAGTTGCTGTTGCTGTCCCTGATGCTGAGAGTGCTC
TGCTTCTTGCCTTGTCTCTGACCGTTAATTGCCGTGGAGGGTGGCAACGG
TCATAGGTGTTGTCAATAACGGTTTCAATATCTTTCTGTCGAATAGCCCC
AGCCAGGTGTCTGGCTCCGAAGACAGAGCTGATCGAATCAAAAAATATTT
GGCACCGACATTTTCCCTATCCAGCAAAATAGCGCAACTACTGCAGAATA
CGGAACATTCGATAGCCGTGTTAACTCGAAGAACCCTGCCTCTGATGGTG
CTTGGCGCTTTCTCTGAAGGCACCGTTCCACGATCCCTGAAACGTGTATC
ATAGCTATTGTGTGTGCCATTCCTGCTGCCCTCATATCACCCCTCCAGGA
GAAAATAGCAAAGTTGGATCGGCGTCTGGCGCGGCAGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1068:4409..5696+

>mRNA_D-herbacea_F_contig1068.656.1 ID=mRNA_D-herbacea_F_contig1068.656.1|Name=mRNA_D-herbacea_F_contig1068.656.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=480bp|location=Sequence derived from alignment at D-herbacea_F_contig1068:4409..5696+ (Desmarestia herbacea DmunF female)
GACGATGAGATTGACCGCGTGGCTACGCTGAAGACGGAAAGGTTGCACAT
CCGATTGAAGGCAGAGGCAGCCGCTTATATCGATGGCGATAAGGACGATG
AGATTGACCGCGTGGCTACGCTGAAGACGGAAAGGTTGCACATCCGATTG
AAGGCAGAGGCAGCCGCTTATATCGATGGCGATAAGAAAGCGGCCACGGA
GGCGCTGGATACATTGAAGAGGGAATCATCTCAAGAGCTGACCGAAATGA
AAAGCAGGGGCGACAAAGCTACAGCCGATAATGCGGCGAATGTGAAAGCG
GCCACGGAGGCGCTGGATACATTGAAGAGGGAATCATCTCAAGAGCTGAC
CGAAATGAAAAGCAGGGGCGACAAAGCTACAGCCGATAATGCGGCGAATG
TGGAGAAAATAGCAAAGTTGGATCGGCGTCTGGCGCGGCAGGAGAAAATA
GCAAAGTTGGATCGGCGTCTGGCGCGGCAG
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