mRNA_D-herbacea_F_contig1067.655.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1067.655.1
Unique NamemRNA_D-herbacea_F_contig1067.655.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1067.655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1067contigD-herbacea_F_contig1067:71407..75023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1067.655.1prot_D-herbacea_F_contig1067.655.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1067 71407..74895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.011095-CDS-D-herbacea_F_contig1067:71406..715531622927475.011095-CDS-D-herbacea_F_contig1067:71406..71553Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 71407..71553 -
1690790190.9478257-CDS-D-herbacea_F_contig1067:71406..715531690790190.9478257-CDS-D-herbacea_F_contig1067:71406..71553Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 71407..71553 -
1622927475.031532-CDS-D-herbacea_F_contig1067:74838..748951622927475.031532-CDS-D-herbacea_F_contig1067:74838..74895Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 74839..74895 -
1690790190.9578478-CDS-D-herbacea_F_contig1067:74838..748951690790190.9578478-CDS-D-herbacea_F_contig1067:74838..74895Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 74839..74895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.0509892-UTR-D-herbacea_F_contig1067:74895..750231622927475.0509892-UTR-D-herbacea_F_contig1067:74895..75023Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1067 74896..75023 -
1690790190.9666936-UTR-D-herbacea_F_contig1067:74895..750231690790190.9666936-UTR-D-herbacea_F_contig1067:74895..75023Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1067 74896..75023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1067.655.1

>prot_D-herbacea_F_contig1067.655.1 ID=prot_D-herbacea_F_contig1067.655.1|Name=mRNA_D-herbacea_F_contig1067.655.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=68bp
MCCWIFFGPTLHSIRVVQQDNEVIDVSRSDAAIFPAGAGEDVEDACPSYV
CADGGVYLGVPWRLRKE*
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mRNA from alignment at D-herbacea_F_contig1067:71407..75023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1067.655.1 ID=mRNA_D-herbacea_F_contig1067.655.1|Name=mRNA_D-herbacea_F_contig1067.655.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=3617bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:71407..75023- (Desmarestia herbacea DmunF female)
GGCGGTGACGACGAGGCTCTAGCTGGAACGACGACAAGAAGTAAGGGAAG
CAACGACGAACACGTCGCTTGGAAGGGCGCGTTGTGCGGCGCTGGCTTGG
AAATGTCGGACAGGAAGCACGATGCGTGATGTGCTGCTGGATCTTCTTTG
GACCAACACTTCACAGCATACGAGTAGTACAGCAGGTAAAAAAGACGTCA
CAACATTTGTACTCCGTGTTTACCATAATTAATTCATTGATTATTTTAGT
CCCTGTCTATTGAAAATAATTAGTATGGTACGAGTAGTGGTATTCACTAG
TAAGTACATTGGTACTATAGATGTAGGTGTTGTTTCATTTTTTCGTACAT
TTTGATGTTATTGTGTGATCACGTGAGTACTTACGTACTTCCTACGTATT
ACTTATTAATAGTGTTTGTTTATAGAATTCGATGTGGGTGCACACAATGC
AATAATAGGAATCTCTACTCGTATAATTGATGGCAAATCTAACCGAAATG
AACCCTTGTGTTGATAGTGAGTAAGAACGTTCTAAGAAATTGCAATCTAT
ATCTCGAATATGTAGTGATGTGCTGACTAGTAGTAGTAGTAGTAGTACAG
TACGGTGATACTACAGACTGTAGCTACGATTTACATATAAAACATATCGA
TTTATGTTTATTTTAATTTTTATTTTCCGTCACATTAGCCCGATCGCGCG
GACCCGTGGTCACAAAAGTAGGCACCTTTACTTTACCGAATAAAACCGAC
CCCACCGGCCCCTCTCCACAAACACACTCCATCTACCCCCACTGATTTAA
TATCATCATGACTTGGGAGATAACAGTGGCTAAGAGAACAGGGATGCACA
AAAAAAATAAATAAATAAAAAAAACGAGTAAAACGAACAAAACCGAAACA
CAACCAGAGCACAAATAAAACGAAGACACCGGACAGGTACTACGGATTGC
AATCCACCCCCTCCCACCGATTCTATCTTGTCCGTGTCTGGGAGAAAAGC
ATGAGGGCTAAGAGAACAGAAAAACACGAACAACAGAAAACAAGCATACA
CGAAGACAGCGAAGACAATTAACATTGGGTACGTGTTTCACAAGGGTGCG
GGTGCTTAGTGCGTCTTAGGAGGCGTACGGCAACACAGCGAACAGTTCAC
GCGCGTGTCGTTCGCGTGTCTCGCGGCTCTTCGCTGCGAACCACTCGGCC
ATATACCTAGTGGCTCCTTCCTCTACGGTAGTACGCCACCCCCCTCTACG
AGCTGCCTCCATCCAAGATTTCTCCTCTATCCCAAAATCGCGGAGGTATT
CCTTGACGCAGTCCTGTAGTTGCCGCGGGGGTCTGCCAGCCGTTCGCGCT
CCCCCGACCAGTTCCCCGCGCATGACGATGTTCGGGAGTCGGTAATCGCC
CATGCACGCGACGCGGCCCGCGTATAGCAGGGTGCGCCTCCTCACGGTGG
CTTCGATGCTCTCGCAGCCGGTCTTCACGAGTGCGTCGCGGTACGACATT
TGGCGGAAATCAGCGGGAGTGCCTGTTCTTTTCCGGTACTCGCCGATGCA
CCGCTGCAGAAGCCCTCGGTGGCACTCTCGCAGCTTCGCGAAGTCGTTGG
GGGCAAGGGTCCATGTCACGCAGCCGTATAACAGGATCTCGAGCGCTTCC
GCGTTGAGCAGGCGGATCTTGTCTGCAAGTGGTACCTCTACGTTGTTGTA
CACCTGTCTGTTGTACTTTTTCAGGCTGCCCCATGCGAAACGGACGCGCC
GCTTCAGCTCCGGTTGGATGTCGGCCATACTGCTGATGGCGCCTCCAAGA
TACACAAACTTGTCGGTTTGTTTGTATGTCTGTCCCGCCGCTTCGATTAC
AAGAGCCTGCTCGGCGGCACCCGGATAATGCAGGTACACGGTCTCCGTCT
CCCTCTCAGCCACAGTGAGGCCAAACCCTTCGCACACCCTGACGATTGCC
GTCATCATCTTCGCTAAACTTGTCGCCGATTTCGAAACGACGCCAGCATC
GTCGGCGTAAAGCATCGCCCAGAGTTCCTTCCCCCTATCCTTGCCGCCCT
GTCCGCGAGCGGCGATGTATACGAAGTCGCTCCGCACATCTTCCTCGGCC
GCAAAGCGGTCGTACGCCACCCCTAAGACTGTCGTGCAGAAGATGTTGAA
GAGCAGTGGCGCAAGCACACAGCCTTGGCGGAGACCTTGCTCCACGTTGA
ACCACTCTGATGTCTCCCCACTGTCCAACCGCACGCATGCCCTCATACCG
TCGTGAAACTCGCGAATGACGGATATCATCTTAGCTGGTATGCCATATCG
TGCTAGCAGGTCCCACAAGAGAGTACGGTCGACGGAGTCGTACGCCTTCT
GCAGGTCAATGAAGCATGCGTATAGCGGCACCTTCTTTTCTCGAGCCAAC
TCTTGCAGTCTACGAACGACGTACATCATGTCGACCGTCGATCGCCCTGG
TCGGAATCCGCACTGTGCCTCGGGCAGAAATCGATATAAATTATTCATCG
TTTTTAGGTTATGAGGGCCATGTCGTGTCAGAAAAAAAGGTGACACCATC
AAGGTTCGAACTCACACCAAAAAAGAAAAAGAGTACGTACCCCACACACA
ATAACTATATAGGCAGTAATAGTGAATATTCGTATACACGCAGCGTTTTG
GCCCACGAATCAAGCAAGGACGCGGGCTTTAATATCGAGAGACAGAAGCT
ACGACGGGAACTGAAAGTTGGCTACGCCTGACTATGGGTACCGCAGCGTT
TAGAACTCGTCACTGTAGGCCGTATGGTTGGAAGTTGTAGACGAAATAAT
TAAATAATAGGGCGGTGTCGTGTCAGCCAAAAAGGAAACACGCCAGCAAG
GCTAACCCTTTTTTTTTTTTTTCCGTCCCATTTATTATCTTCGCCCTAGT
CTTTCTCTAGCTCCATCTCTCTTCGTAACTCAGATCCGGGGTCACATAGT
AGGCGCTCCCCCCTCCTTCCCACTACGCTACGTGCGCACATTTTTATGGC
GACAAGAGTGCAGCACTTTCTTCCCTCGTCGACTTTCATCAAATTGTGCT
TACTCGCGCTCTTGTTGCGTTTTCCGCGACGGAAAATGACACAGAAAAGT
GCCACCGGGAATCGAACCCTCAACTTCCGCCAACAGAGGAAATACCCTAG
CCGTTTGACCACTGGGCCACCCCCTCCTGAAAAAAAGAAAAAGTACATGC
GCGCTGGTCCAGCCTACTACTGTACTGTACACGTTATTTGTGGTGTTGTC
AGCATTTGGTGACCCCGTTTTGTCGAATTTGCAACGGAATGTTTGGCATG
AGTTGTATGTGATTGTGATAAAGCTCGACCCTTGACCATTATTTATTTTT
TTCGTGCGATACTTGACAGTTCATCCCGGACTCGTATGCAGTGCCGGTAT
ACCCCCCGGACTGCGTACCAATACTCGCTCCTAGTATCTAACTTCCGTAT
CGTGCGTGGTTTATTGCAAGGACAACGAGGTCATAGACGTATCACGAAGT
GATGCTGCTATTTTCCCAGCGGGAGCTGGCGAGGACGTCGAGGATGCTTG
CCCCAGTTACGTTTGCGCTGACGGAGGAGTTTACCTCGGAGTACCCTGGC
GGTTGCGGAAGGAGTAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1067:71407..75023-

>mRNA_D-herbacea_F_contig1067.655.1 ID=mRNA_D-herbacea_F_contig1067.655.1|Name=mRNA_D-herbacea_F_contig1067.655.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=408bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:71407..75023- (Desmarestia herbacea DmunF female)
ATGTGCTGCTGGATCTTCTTTGGACCAACACTTCACAGCATACGAGTAGT
ACAGCAGATGTGCTGCTGGATCTTCTTTGGACCAACACTTCACAGCATAC
GAGTAGTACAGCAGGACAACGAGGTCATAGACGTATCACGAAGTGATGCT
GCTATTTTCCCAGCGGGAGCTGGCGAGGACGTCGAGGATGCTTGCCCCAG
TTACGTTTGCGCTGACGGAGGAGTTTACCTCGGAGTACCCTGGCGGTTGC
GGAAGGAGTAGGACAACGAGGTCATAGACGTATCACGAAGTGATGCTGCT
ATTTTCCCAGCGGGAGCTGGCGAGGACGTCGAGGATGCTTGCCCCAGTTA
CGTTTGCGCTGACGGAGGAGTTTACCTCGGAGTACCCTGGCGGTTGCGGA
AGGAGTAG
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