mRNA_D-herbacea_F_contig1067.654.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1067.654.1
Unique NamemRNA_D-herbacea_F_contig1067.654.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1067.654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1067contigD-herbacea_F_contig1067:48102..49082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1067.654.1prot_D-herbacea_F_contig1067.654.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1067 48102..49082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927475.0968592-CDS-D-herbacea_F_contig1067:48101..483081622927475.0968592-CDS-D-herbacea_F_contig1067:48101..48308Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48102..48308 -
1690790190.9772081-CDS-D-herbacea_F_contig1067:48101..483081690790190.9772081-CDS-D-herbacea_F_contig1067:48101..48308Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48102..48308 -
1622927475.112007-CDS-D-herbacea_F_contig1067:48543..486461622927475.112007-CDS-D-herbacea_F_contig1067:48543..48646Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48544..48646 -
1690790190.9867074-CDS-D-herbacea_F_contig1067:48543..486461690790190.9867074-CDS-D-herbacea_F_contig1067:48543..48646Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48544..48646 -
1622927475.1258938-CDS-D-herbacea_F_contig1067:48969..490821622927475.1258938-CDS-D-herbacea_F_contig1067:48969..49082Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48970..49082 -
1690790190.9949508-CDS-D-herbacea_F_contig1067:48969..490821690790190.9949508-CDS-D-herbacea_F_contig1067:48969..49082Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 48970..49082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1067.654.1

>prot_D-herbacea_F_contig1067.654.1 ID=prot_D-herbacea_F_contig1067.654.1|Name=mRNA_D-herbacea_F_contig1067.654.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=141bp
GFGISLTARGEPKSGTTWLGTVITHLAVTLCGSSTNRWCHMGGLQIHPNF
PAPWYHFEMLHAQNGTLFMSFKGQSKHQIPGLQIENGCNRGGEFHRDTFE
TNSPCKSGGPLTRGRLLGCLPDTSPSCLQNLRPIDPSIRR*
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mRNA from alignment at D-herbacea_F_contig1067:48102..49082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1067.654.1 ID=mRNA_D-herbacea_F_contig1067.654.1|Name=mRNA_D-herbacea_F_contig1067.654.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=981bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:48102..49082- (Desmarestia herbacea DmunF female)
GGATTTGGAATATCGCTAACTGCACGCGGGGAGCCAAAATCGGGCACGAC
TTGGCTGGGAACGGTCATTACCCACCTCGCCGTTACTTTATGCGGGAGTT
CGACCAATCGATGGTATGAGTTTGAGCAGGGATTGGTGTGTCGATATTTT
ACGTTTGGCGCCTAAACTCGTACGGTTCATGTACACACTCGTGAACAGGT
TTCCCTACGCTACTGTAGGTCAAAACTCTCGCGTGCCGCGGAGAGAGCCT
CCTCTAAGGTTTTTATTTGCCAGAGTGAGGAACGGAGTACCTAGGACGGG
CTTTATTGGCCATAGACGAGCTTGCTTCATTCTGTGCCTCGAATCGGTTT
TGCCTCATAAGTGGTTCCATGTCGCCAAAGGACGAATGCTCATGGACTGT
GAATTTTCTGTTGGCCGATTATACCCCAAATCGCAGGTGTCACATGGGGG
GACTGCAAATACATCCAAACTTCCCAGCTCCTTGGTATCATTTCGAGATG
CTCCATGCCCAAAATGGGACCCTTTTCATGAGCTTCAAGGTGAAGCTTAA
TTTTGGAATGGTGTATCATCACTTTTTTCGCATAGAAGAAGCAATTTTGT
ACGCGTAAATTGCATTTTTAGAGATATAACTATTGTCTTCGCGAACAGGT
TAGTGTGCCGGTGCAAACTAATATTTATAGTGATCAATTCACCCGTCAGA
AGTGTCTACTACCCACGATGGCCATATTTCTGCTGAATCGGCCGCCATCC
TGAAATTGTTTTTGACGTCCGTAGGGTCAATCAAAACACCAAATTCCAGG
GCTCCAAATCGAGAATGGATGCAACCGTGGTGGTGAATTTCATCGAGACA
CTTTCGAGACAAACTCTCCGTGCAAGTCAGGCGGCCCTCTAACACGTGGT
CGACTTCTTGGCTGCCTTCCAGATACATCCCCTTCGTGCCTGCAAAATTT
GCGCCCTATAGATCCGAGTATTCGCCGGTAA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1067:48102..49082-

>mRNA_D-herbacea_F_contig1067.654.1 ID=mRNA_D-herbacea_F_contig1067.654.1|Name=mRNA_D-herbacea_F_contig1067.654.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=846bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:48102..49082- (Desmarestia herbacea DmunF female)
GGATTTGGAATATCGCTAACTGCACGCGGGGAGCCAAAATCGGGCACGAC
TTGGCTGGGAACGGTCATTACCCACCTCGCCGTTACTTTATGCGGGAGTT
CGACCAATCGATGGGATTTGGAATATCGCTAACTGCACGCGGGGAGCCAA
AATCGGGCACGACTTGGCTGGGAACGGTCATTACCCACCTCGCCGTTACT
TTATGCGGGAGTTCGACCAATCGATGGTGTCACATGGGGGGACTGCAAAT
ACATCCAAACTTCCCAGCTCCTTGGTATCATTTCGAGATGCTCCATGCCC
AAAATGGGACCCTTTTCATGAGCTTCAAGGTGTCACATGGGGGGACTGCA
AATACATCCAAACTTCCCAGCTCCTTGGTATCATTTCGAGATGCTCCATG
CCCAAAATGGGACCCTTTTCATGAGCTTCAAGGGTCAATCAAAACACCAA
ATTCCAGGGCTCCAAATCGAGAATGGATGCAACCGTGGTGGTGAATTTCA
TCGAGACACTTTCGAGACAAACTCTCCGTGCAAGTCAGGCGGCCCTCTAA
CACGTGGTCGACTTCTTGGCTGCCTTCCAGATACATCCCCTTCGTGCCTG
CAAAATTTGCGCCCTATAGATCCGAGTATTCGCCGGTAAGGTCAATCAAA
ACACCAAATTCCAGGGCTCCAAATCGAGAATGGATGCAACCGTGGTGGTG
AATTTCATCGAGACACTTTCGAGACAAACTCTCCGTGCAAGTCAGGCGGC
CCTCTAACACGTGGTCGACTTCTTGGCTGCCTTCCAGATACATCCCCTTC
GTGCCTGCAAAATTTGCGCCCTATAGATCCGAGTATTCGCCGGTAA
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