mRNA_D-herbacea_F_contig1067.653.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1067.653.1
Unique NamemRNA_D-herbacea_F_contig1067.653.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1067.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1067contigD-herbacea_F_contig1067:14642..15927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.9479597-CDS-D-herbacea_F_contig1067:14643..148331622927474.9479597-CDS-D-herbacea_F_contig1067:14643..14833Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 14644..14833 -
1690790190.930982-CDS-D-herbacea_F_contig1067:14643..148331690790190.930982-CDS-D-herbacea_F_contig1067:14643..14833Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 14644..14833 -
1622927474.9641252-CDS-D-herbacea_F_contig1067:15844..159271622927474.9641252-CDS-D-herbacea_F_contig1067:15844..15927Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 15845..15927 -
1690790190.9389477-CDS-D-herbacea_F_contig1067:15844..159271690790190.9389477-CDS-D-herbacea_F_contig1067:15844..15927Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1067 15845..15927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1067.653.1prot_D-herbacea_F_contig1067.653.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1067 14644..15927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1067.653.1

>prot_D-herbacea_F_contig1067.653.1 ID=prot_D-herbacea_F_contig1067.653.1|Name=mRNA_D-herbacea_F_contig1067.653.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=91bp
EKSEPTKKSSCLPSPAVIPRGRARHEGVTRPPEGRYNAGHSVPYLFESTM
RRQVGCTGQGIQCGRGPCFARTTDMFSGGNIEGCRNITATQ
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mRNA from alignment at D-herbacea_F_contig1067:14642..15927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1067.653.1 ID=mRNA_D-herbacea_F_contig1067.653.1|Name=mRNA_D-herbacea_F_contig1067.653.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1286bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:14642..15927- (Desmarestia herbacea DmunF female)
GAGAAGAGCGAGCCCACAAAGAAAAGCTCTTGCTTACCGTCTCCAGCAGT
CATTCCTCGTGGTCGAGCTAGACATGAAGGTGTGTGAGATCTTGGTCATC
GACATATACTATCATATGAGAGATGCCTTACATGTAGAGAAGCAACCAAG
CCGAGGCTGTAAAAGCAACAGTACTGCCAAGGGGTATACGCTCGTGCATC
TGGTACTACTACTACTACTACTACTAGTGGAAGAAGGAGTGTTTGTTCTT
TACACTATATAGTACGTGCAGCACCTAGCTGCGGCTAGGTTTGTTTTACG
AGCACAACAGACGTAGTAGTTCAATTACAGTAGTAGTACACCAACATACT
GGTATAAATAGTATGATTGATATTATAGTACGTATTACAGATTTTTTTTT
TTTTCCGTTCCATTTATTGTCGCATCACCCTATTCTTTTTCTAGCCCCAT
CTCTCTTCGTAACTCAGATCCGGGGTCACATGGTAGGCAATCCTCCCTCC
TTCCCGCTACGGTACATGCCTACATTTTTATCGCGAGAAGAGTGCAGCAC
TTTCTTCCCTCGTCGAGTTTCATCAAATTGTGCTTACTCACGCTCTCACG
TTTTCCGCGACGGAAGATTGCACAGAAAAGTGCCACCGGGAATCGAACCC
CCAACTTCCGCCAACAGAGGCAACACCCAAACCATTAGACCACTGCGCCA
CCCCTACACTATGTGTCGAATTATAGCAAGTACGTGGCGTCGATACATCA
ACAGTTGTACAGAACGCCCTCCCCAAAGAGCAACCGACATCTCCCAAGCT
TATAGGTCACCTTAGGACATGACTCCCGGTACAGTCAGTAGGTATGATAC
ATGATACACAACTTGTACCGTAGGAGATACGATACTATATTGCGAGCTAC
TAGAACAGACTATATTTCTGTTTTTGTACTATTATAATACTGTCTGTTGT
ACAACTGGAAGAGTAGTATGACTACAAGTTGCAGTACTTGTAGTACTCAT
ATACGTATATCCGTGCTGGCGAATAGTAAATATATGATAGTGGAACACAA
ACGCACAACCTCTCTGTACCCCCCCCCCCCCCCTGCCTGGGGAGTACTCG
ACCGCCGGAAGGAAGGTACAACGCAGGCCATAGCGTTCCCTATCTCTTCG
AAAGCACGATGCGGAGGCAGGTTGGGTGTACGGGGCAGGGTATCCAGTGC
GGGCGTGGACCGTGCTTTGCACGCACTACGGATATGTTCTCAGGCGGAAA
CATTGAGGGTTGCAGAAACATTACCGCGACGCAGAT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1067:14642..15927-

>mRNA_D-herbacea_F_contig1067.653.1 ID=mRNA_D-herbacea_F_contig1067.653.1|Name=mRNA_D-herbacea_F_contig1067.653.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=546bp|location=Sequence derived from alignment at D-herbacea_F_contig1067:14642..15927- (Desmarestia herbacea DmunF female)
GAGAAGAGCGAGCCCACAAAGAAAAGCTCTTGCTTACCGTCTCCAGCAGT
CATTCCTCGTGGTCGAGCTAGACATGAAGGTGTGAGAAGAGCGAGCCCAC
AAAGAAAAGCTCTTGCTTACCGTCTCCAGCAGTCATTCCTCGTGGTCGAG
CTAGACATGAAGGTGTTACTCGACCGCCGGAAGGAAGGTACAACGCAGGC
CATAGCGTTCCCTATCTCTTCGAAAGCACGATGCGGAGGCAGGTTGGGTG
TACGGGGCAGGGTATCCAGTGCGGGCGTGGACCGTGCTTTGCACGCACTA
CGGATATGTTCTCAGGCGGAAACATTGAGGGTTGCAGAAACATTACCGCG
ACGCAGTACTCGACCGCCGGAAGGAAGGTACAACGCAGGCCATAGCGTTC
CCTATCTCTTCGAAAGCACGATGCGGAGGCAGGTTGGGTGTACGGGGCAG
GGTATCCAGTGCGGGCGTGGACCGTGCTTTGCACGCACTACGGATATGTT
CTCAGGCGGAAACATTGAGGGTTGCAGAAACATTACCGCGACGCAG
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