mRNA_D-herbacea_F_contig1062.649.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1062.649.1
Unique NamemRNA_D-herbacea_F_contig1062.649.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.050e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -1
Query:   25 PEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 138
            P+AQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   17 PKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 62.8 bits (151), Expect = 4.360e-12
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = -3
Query:    8 GSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQR 136
            GSARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R
Sbjct:    7 GSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYR 49          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 4.850e-12
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = -1
Query:   25 PEAQDAFKILMIHWILQVARRIAFRCVLHRCGSQDIRR 138
            PEAQ AFKILMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   82 PEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 65.5 bits (158), Expect = 1.350e-11
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = -3
Query:   14 GSARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 136
            GSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL
Sbjct:  128 GSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVL 168          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A2H3J453_WOLCO (Uncharacterized protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3J453_WOLCO)

HSP 1 Score: 60.8 bits (146), Expect = 2.850e-11
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = -3
Query:   14 ARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 130
            ARCVQ FDDSLDSA   TYRISLRSSS+ EPR PSL+V+
Sbjct:    9 ARCVQRFDDSLDSAIHITYRISLRSSSMREPRDPSLRVV 47          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: R7SKF8_DICSQ (Uncharacterized protein n=1 Tax=Dichomitus squalens (strain LYAD-421) TaxID=732165 RepID=R7SKF8_DICSQ)

HSP 1 Score: 60.5 bits (145), Expect = 3.430e-11
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = -3
Query:    8 SARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQR 133
            SARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R
Sbjct:    8 SARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYR 49          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: UPI001BF7CBFD (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF7CBFD)

HSP 1 Score: 62.0 bits (149), Expect = 3.740e-11
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 PYNVVKLSATDVLAPTTMKNAAKCDTSCDLQNPVNHQNFERILR 132
            P N V+  ATD+LA  +MKN AKCDT C+LQNP NHQ FER LR
Sbjct:   34 PGNGVRAVATDILALASMKNVAKCDTWCELQNPANHQVFERKLR 77          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A0P9EDQ3_RHOGW (Uncharacterized protein n=2 Tax=Basidiomycota TaxID=5204 RepID=A0A0P9EDQ3_RHOGW)

HSP 1 Score: 60.5 bits (145), Expect = 3.860e-11
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = -3
Query:    5 SARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRY 133
            SARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL  Y
Sbjct:    8 SARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLFCY 50          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A1Y2ACV0_9TREE (Uncharacterized protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2ACV0_9TREE)

HSP 1 Score: 60.5 bits (145), Expect = 3.950e-11
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = -3
Query:    2 ARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRYM 130
            ARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL  Y+
Sbjct:    9 ARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLLDYI 51          
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Match: A0A8K0JE16_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JE16_9TREE)

HSP 1 Score: 60.8 bits (146), Expect = 5.010e-11
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = -3
Query:    5 SARCVQNFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQRY 133
            SARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKVL  Y
Sbjct:    8 SARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVLLCY 50          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1062.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA4.050e-1276.32Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
K5UIC4_PHACS4.360e-1274.42Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A524MI88_9PROT4.850e-1278.95Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A0E9NCQ7_SAICN1.350e-1178.05Uncharacterized protein n=1 Tax=Saitoella complica... [more]
A0A2H3J453_WOLCO2.850e-1176.92Uncharacterized protein n=1 Tax=Wolfiporia cocos (... [more]
R7SKF8_DICSQ3.430e-1173.81Uncharacterized protein n=1 Tax=Dichomitus squalen... [more]
UPI001BF7CBFD3.740e-1165.91Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
A0A0P9EDQ3_RHOGW3.860e-1174.42Uncharacterized protein n=2 Tax=Basidiomycota TaxI... [more]
A0A1Y2ACV0_9TREE3.950e-1172.09Uncharacterized protein n=1 Tax=Naematelia encepha... [more]
A0A8K0JE16_9TREE5.010e-1174.42Uncharacterized protein n=1 Tax=Filobasidium flori... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1062contigD-herbacea_F_contig1062:32003..32140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog4155.Migut.A01090.1.p
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CYIR@1,2S4NT@2759,37W8S@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.7818837-CDS-D-herbacea_F_contig1062:32002..321401622927474.7818837-CDS-D-herbacea_F_contig1062:32002..32140Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1062 32003..32140 +
1690790190.8443592-CDS-D-herbacea_F_contig1062:32002..321401690790190.8443592-CDS-D-herbacea_F_contig1062:32002..32140Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1062 32003..32140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1062.649.1prot_D-herbacea_F_contig1062.649.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1062 32003..32140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1062.649.1

>prot_D-herbacea_F_contig1062.649.1 ID=prot_D-herbacea_F_contig1062.649.1|Name=mRNA_D-herbacea_F_contig1062.649.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=46bp
PYNVVKLSATDVLAPTTMKNAAKCDTSCDLQNPVNHQNFERILRFR
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mRNA from alignment at D-herbacea_F_contig1062:32003..32140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1062.649.1 ID=mRNA_D-herbacea_F_contig1062.649.1|Name=mRNA_D-herbacea_F_contig1062.649.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=138bp|location=Sequence derived from alignment at D-herbacea_F_contig1062:32003..32140+ (Desmarestia herbacea DmunF female)
CCATATAACGTTGTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAAC GATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAG TGAATCATCAAAATTTTGAACGCATCTTGCGCTTCCGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1062:32003..32140+

>mRNA_D-herbacea_F_contig1062.649.1 ID=mRNA_D-herbacea_F_contig1062.649.1|Name=mRNA_D-herbacea_F_contig1062.649.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=276bp|location=Sequence derived from alignment at D-herbacea_F_contig1062:32003..32140+ (Desmarestia herbacea DmunF female)
CCATATAACGTTGTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAAC
GATGAAGAACGCAGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAG
TGAATCATCAAAATTTTGAACGCATCTTGCGCTTCCGGCCATATAACGTT
GTAAAACTTTCAGCGACGGATGTCTTGGCTCCCACAACGATGAAGAACGC
AGCGAAATGCGATACGTCTTGCGACTTGCAGAATCCAGTGAATCATCAAA
ATTTTGAACGCATCTTGCGCTTCCGG
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