mRNA_D-herbacea_F_contig106.644.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.644.1
Unique NamemRNA_D-herbacea_F_contig106.644.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
[Close]
BLAST of mRNA_D-herbacea_F_contig106.644.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.710e-10
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 ASGRSRRPPQSKLKVRFKNRTLIRARSIILPLPAASRPRPLLSGPAAVAIARRSSFGVRRSAPGTGFVATGAPTNFVRSGKYGMAIRR 298
            A+GRSR+ P+SK  VRFKNRTLIRARS+   LP         +     A+ARR+SFG      G G  A  + TNFVR GK+GMAIRR
Sbjct:  550 AAGRSRKAPRSK-HVRFKNRTLIRARSL---LPQQRGAAMTTAATILGAVARRASFGATSRFAGLGGTAASS-TNFVRGGKHGMAIRR 632
[Close]
BLAST of mRNA_D-herbacea_F_contig106.644.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.040e-7
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:   35 ASGRSRRPPQSKLKVRFKNRTLIRARSIILPLPAASRPRPLLSGPAAVAIARRSSFGVRRSAPGTGFVATGAPTNFVRSGKYGMAIRR 298
            A+GRSR+ P+SK  VRFKNRTLIRARS+   LP         +     A+ARR+SFG        G  A  + T FVR GK+GMAIRR
Sbjct:  521 AAGRSRQAPRSK-HVRFKNRTLIRARSL---LPQQRGAAMTTAATILGAVARRASFGATSRFAKLGGTAASS-TKFVRGGKHGMAIRR 603
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC32_9PHAE9.710e-1052.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB82_ECTSI1.040e-750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:907292..907589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.536048-UTR-D-herbacea_F_contig106:907291..9073221622927474.536048-UTR-D-herbacea_F_contig106:907291..907322Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 907292..907322 +
1690790190.7559788-UTR-D-herbacea_F_contig106:907291..9073221690790190.7559788-UTR-D-herbacea_F_contig106:907291..907322Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 907292..907322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927474.5485692-CDS-D-herbacea_F_contig106:907322..9075891622927474.5485692-CDS-D-herbacea_F_contig106:907322..907589Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 907323..907589 +
1690790190.7648542-CDS-D-herbacea_F_contig106:907322..9075891690790190.7648542-CDS-D-herbacea_F_contig106:907322..907589Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 907323..907589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.644.1prot_D-herbacea_F_contig106.644.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 907323..907589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.644.1

>prot_D-herbacea_F_contig106.644.1 ID=prot_D-herbacea_F_contig106.644.1|Name=mRNA_D-herbacea_F_contig106.644.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=89bp
MASGRSRRPPQSKLKVRFKNRTLIRARSIILPLPAASRPRPLLSGPAAVA
IARRSSFGVRRSAPGTGFVATGAPTNFVRSGKYGMAIRR
back to top

mRNA from alignment at D-herbacea_F_contig106:907292..907589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.644.1 ID=mRNA_D-herbacea_F_contig106.644.1|Name=mRNA_D-herbacea_F_contig106.644.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=298bp|location=Sequence derived from alignment at D-herbacea_F_contig106:907292..907589+ (Desmarestia herbacea DmunF female)
CGCTTCCTGGAGGGGTGGACGCGGCGGGTTAATGGCCTCCGGCCGTTCTC
GTCGCCCACCGCAGTCGAAACTGAAGGTGCGGTTCAAGAACCGAACTCTG
ATTCGGGCCCGAAGTATCATCCTTCCTCTGCCCGCAGCTTCGAGACCGCG
ACCACTTCTATCGGGTCCTGCCGCTGTCGCCATCGCTCGGCGGTCCTCGT
TCGGCGTACGACGCTCCGCCCCTGGGACTGGGTTCGTGGCTACGGGCGCA
CCGACAAATTTTGTCCGTAGCGGCAAGTATGGTATGGCGATCAGGCGC
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig106:907292..907589+

>mRNA_D-herbacea_F_contig106.644.1 ID=mRNA_D-herbacea_F_contig106.644.1|Name=mRNA_D-herbacea_F_contig106.644.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=534bp|location=Sequence derived from alignment at D-herbacea_F_contig106:907292..907589+ (Desmarestia herbacea DmunF female)
ATGGCCTCCGGCCGTTCTCGTCGCCCACCGCAGTCGAAACTGAAGGTGCG
GTTCAAGAACCGAACTCTGATTCGGGCCCGAAGTATCATCCTTCCTCTGC
CCGCAGCTTCGAGACCGCGACCACTTCTATCGGGTCCTGCCGCTGTCGCC
ATCGCTCGGCGGTCCTCGTTCGGCGTACGACGCTCCGCCCCTGGGACTGG
GTTCGTGGCTACGGGCGCACCGACAAATTTTGTCCGTAGCGGCAAGTATG
GTATGGCGATCAGGCGCATGGCCTCCGGCCGTTCTCGTCGCCCACCGCAG
TCGAAACTGAAGGTGCGGTTCAAGAACCGAACTCTGATTCGGGCCCGAAG
TATCATCCTTCCTCTGCCCGCAGCTTCGAGACCGCGACCACTTCTATCGG
GTCCTGCCGCTGTCGCCATCGCTCGGCGGTCCTCGTTCGGCGTACGACGC
TCCGCCCCTGGGACTGGGTTCGTGGCTACGGGCGCACCGACAAATTTTGT
CCGTAGCGGCAAGTATGGTATGGCGATCAGGCGC
back to top