mRNA_D-herbacea_F_contig106.643.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.643.1
Unique NamemRNA_D-herbacea_F_contig106.643.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:906450..907221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size772
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.576069-CDS-D-herbacea_F_contig106:906449..9072201622927469.576069-CDS-D-herbacea_F_contig106:906449..907220Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 906450..907220 +
1690790187.5099175-CDS-D-herbacea_F_contig106:906449..9072201690790187.5099175-CDS-D-herbacea_F_contig106:906449..907220Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 906450..907220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.643.1prot_D-herbacea_F_contig106.643.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 906450..907220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.643.1

>prot_D-herbacea_F_contig106.643.1 ID=prot_D-herbacea_F_contig106.643.1|Name=mRNA_D-herbacea_F_contig106.643.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=257bp
GSSAGITAPAFSRIETSSSAGASSAMTKVKRLAPRGGSSGGGVTAVPGDV
KSVSRYSSSARRAPGAGLGAAVGNRVGPVSHGDAGAGGVAGAGAASGGAK
SVSRYSGSAKRAPGATFTAVGDRVGPVSRFSGSTRSWHLSRKSTAINSNG
VVGAPSFSCQQKGVGQVARYSGARGATAAVAAQGKRKPPPQFAKHVVGGR
GMGAWRGGRVAPSGGRMVSSGSYYRASLGARSNYAAWQAGQTWGGYVRGG
RGVRPFP
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mRNA from alignment at D-herbacea_F_contig106:906450..907221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.643.1 ID=mRNA_D-herbacea_F_contig106.643.1|Name=mRNA_D-herbacea_F_contig106.643.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=772bp|location=Sequence derived from alignment at D-herbacea_F_contig106:906450..907221+ (Desmarestia herbacea DmunF female)
GGGAGCTCCGCCGGCATCACAGCTCCTGCTTTTTCACGAATAGAAACGAG
TTCATCGGCTGGTGCGTCGAGCGCCATGACGAAGGTGAAAAGGCTTGCGC
CCCGTGGTGGCAGTTCTGGTGGCGGTGTTACTGCTGTGCCAGGTGATGTT
AAATCAGTTTCGCGGTATTCCAGCTCAGCGAGACGTGCCCCCGGTGCCGG
CTTGGGTGCAGCTGTTGGTAATCGCGTAGGCCCGGTCTCGCACGGCGATG
CTGGTGCTGGTGGTGTAGCTGGTGCTGGTGCTGCGTCAGGTGGTGCTAAA
TCGGTTTCGCGGTATTCCGGGTCGGCGAAACGTGCCCCCGGTGCCACCTT
CACTGCTGTTGGTGACCGCGTAGGCCCGGTCTCGAGATTTTCCGGGTCGA
CCAGGAGCTGGCACTTATCACGTAAAAGTACCGCAATCAATAGCAATGGC
GTTGTTGGCGCGCCGTCCTTTTCTTGTCAGCAGAAAGGTGTCGGGCAGGT
CGCGAGGTACTCTGGGGCGCGCGGCGCCACCGCCGCTGTCGCTGCTCAGG
GGAAGAGGAAGCCCCCTCCTCAATTCGCTAAGCACGTGGTTGGAGGGCGG
GGCATGGGCGCTTGGCGAGGAGGGAGGGTAGCACCATCAGGTGGAAGGAT
GGTGAGCAGCGGGAGTTATTATCGTGCATCACTGGGTGCTCGTAGCAACT
ATGCCGCGTGGCAGGCGGGGCAAACGTGGGGTGGCTATGTAAGAGGAGGA
CGAGGCGTCAGGCCGTTTCCAC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:906450..907221+

>mRNA_D-herbacea_F_contig106.643.1 ID=mRNA_D-herbacea_F_contig106.643.1|Name=mRNA_D-herbacea_F_contig106.643.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1542bp|location=Sequence derived from alignment at D-herbacea_F_contig106:906450..907221+ (Desmarestia herbacea DmunF female)
GGGAGCTCCGCCGGCATCACAGCTCCTGCTTTTTCACGAATAGAAACGAG
TTCATCGGCTGGTGCGTCGAGCGCCATGACGAAGGTGAAAAGGCTTGCGC
CCCGTGGTGGCAGTTCTGGTGGCGGTGTTACTGCTGTGCCAGGTGATGTT
AAATCAGTTTCGCGGTATTCCAGCTCAGCGAGACGTGCCCCCGGTGCCGG
CTTGGGTGCAGCTGTTGGTAATCGCGTAGGCCCGGTCTCGCACGGCGATG
CTGGTGCTGGTGGTGTAGCTGGTGCTGGTGCTGCGTCAGGTGGTGCTAAA
TCGGTTTCGCGGTATTCCGGGTCGGCGAAACGTGCCCCCGGTGCCACCTT
CACTGCTGTTGGTGACCGCGTAGGCCCGGTCTCGAGATTTTCCGGGTCGA
CCAGGAGCTGGCACTTATCACGTAAAAGTACCGCAATCAATAGCAATGGC
GTTGTTGGCGCGCCGTCCTTTTCTTGTCAGCAGAAAGGTGTCGGGCAGGT
CGCGAGGTACTCTGGGGCGCGCGGCGCCACCGCCGCTGTCGCTGCTCAGG
GGAAGAGGAAGCCCCCTCCTCAATTCGCTAAGCACGTGGTTGGAGGGCGG
GGCATGGGCGCTTGGCGAGGAGGGAGGGTAGCACCATCAGGTGGAAGGAT
GGTGAGCAGCGGGAGTTATTATCGTGCATCACTGGGTGCTCGTAGCAACT
ATGCCGCGTGGCAGGCGGGGCAAACGTGGGGTGGCTATGTAAGAGGAGGA
CGAGGCGTCAGGCCGTTTCCAGGGAGCTCCGCCGGCATCACAGCTCCTGC
TTTTTCACGAATAGAAACGAGTTCATCGGCTGGTGCGTCGAGCGCCATGA
CGAAGGTGAAAAGGCTTGCGCCCCGTGGTGGCAGTTCTGGTGGCGGTGTT
ACTGCTGTGCCAGGTGATGTTAAATCAGTTTCGCGGTATTCCAGCTCAGC
GAGACGTGCCCCCGGTGCCGGCTTGGGTGCAGCTGTTGGTAATCGCGTAG
GCCCGGTCTCGCACGGCGATGCTGGTGCTGGTGGTGTAGCTGGTGCTGGT
GCTGCGTCAGGTGGTGCTAAATCGGTTTCGCGGTATTCCGGGTCGGCGAA
ACGTGCCCCCGGTGCCACCTTCACTGCTGTTGGTGACCGCGTAGGCCCGG
TCTCGAGATTTTCCGGGTCGACCAGGAGCTGGCACTTATCACGTAAAAGT
ACCGCAATCAATAGCAATGGCGTTGTTGGCGCGCCGTCCTTTTCTTGTCA
GCAGAAAGGTGTCGGGCAGGTCGCGAGGTACTCTGGGGCGCGCGGCGCCA
CCGCCGCTGTCGCTGCTCAGGGGAAGAGGAAGCCCCCTCCTCAATTCGCT
AAGCACGTGGTTGGAGGGCGGGGCATGGGCGCTTGGCGAGGAGGGAGGGT
AGCACCATCAGGTGGAAGGATGGTGAGCAGCGGGAGTTATTATCGTGCAT
CACTGGGTGCTCGTAGCAACTATGCCGCGTGGCAGGCGGGGCAAACGTGG
GGTGGCTATGTAAGAGGAGGACGAGGCGTCAGGCCGTTTCCA
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