mRNA_D-herbacea_F_contig106.642.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.642.1
Unique NamemRNA_D-herbacea_F_contig106.642.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:905520..906429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size912
Cds size909
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.5439942-CDS-D-herbacea_F_contig106:905519..9064281622927469.5439942-CDS-D-herbacea_F_contig106:905519..906428Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 905520..906428 +
1690790187.5000165-CDS-D-herbacea_F_contig106:905519..9064281690790187.5000165-CDS-D-herbacea_F_contig106:905519..906428Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 905520..906428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.642.1prot_D-herbacea_F_contig106.642.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 905520..906428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.642.1

>prot_D-herbacea_F_contig106.642.1 ID=prot_D-herbacea_F_contig106.642.1|Name=mRNA_D-herbacea_F_contig106.642.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=303bp
RGRGERGGRSVGGRGRAMTWTNPSISQQTTQPRAPPPSRGGHRVWVNSAA
ASTRRRVSDGSSRIGNAGTPSTNSSSSNFNTIGNSSQQQSRAVPPRVVEG
RGGSAIPARSPRPGAMGARIGGGAMVSAVDSRRPNFSVGASKAGNRVWTK
STGVTNAAVSTSATGSMMATVSNSTPSTAAVSAATTTVNRTPRTMPLPGQ
GSSSGARLPFARRPSRVASAAVRGGSIRDGSRDSAPRKQRNVHLVWTNKM
RDALASAPTAAVAAPTASVPNLQPPAVAIRTKLATKQPDEVSGTGRMAGG
EGG
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mRNA from alignment at D-herbacea_F_contig106:905520..906429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.642.1 ID=mRNA_D-herbacea_F_contig106.642.1|Name=mRNA_D-herbacea_F_contig106.642.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=910bp|location=Sequence derived from alignment at D-herbacea_F_contig106:905520..906429+ (Desmarestia herbacea DmunF female)
AGGGGTCGAGGAGAGAGAGGGGGGCGGTCCGTTGGCGGACGGGGACGTGC
GATGACTTGGACCAACCCTTCCATTTCCCAACAAACGACGCAACCTCGAG
CACCTCCTCCCTCGCGAGGAGGGCACCGAGTGTGGGTAAACTCAGCCGCC
GCGTCGACGAGGAGAAGGGTGAGTGACGGTAGCAGTAGGATAGGAAATGC
GGGTACCCCCAGCACCAACAGCAGTAGCAGTAACTTCAATACAATTGGGA
ATTCTTCACAACAACAATCGCGAGCGGTACCACCGCGTGTCGTTGAAGGA
CGCGGGGGTTCGGCGATTCCGGCCAGATCACCACGGCCAGGGGCGATGGG
AGCGCGAATAGGGGGGGGAGCGATGGTATCAGCGGTTGACAGTCGACGCC
CTAATTTCAGCGTCGGCGCATCCAAGGCGGGAAATCGCGTTTGGACTAAA
AGTACCGGGGTGACAAATGCCGCTGTCAGCACGAGTGCAACTGGCTCGAT
GATGGCGACGGTCTCTAACAGCACGCCATCTACTGCTGCTGTGTCCGCAG
CGACGACGACGGTCAACAGAACGCCCAGGACCATGCCTCTTCCTGGGCAA
GGGTCGTCTAGCGGGGCACGTCTTCCGTTTGCGAGGCGACCCTCTCGCGT
CGCATCCGCAGCAGTCCGAGGCGGGAGCATCAGGGATGGCAGCAGAGATT
CGGCACCCAGAAAACAGAGGAATGTCCACCTGGTCTGGACGAACAAGATG
CGAGACGCTTTGGCTTCCGCCCCGACTGCTGCTGTTGCTGCCCCGACGGC
GTCTGTACCGAACCTACAACCGCCCGCAGTTGCCATCCGCACCAAACTGG
CGACGAAACAGCCGGATGAGGTTAGTGGGACTGGGCGGATGGCAGGGGGA
GAAGGAGGAG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:905520..906429+

>mRNA_D-herbacea_F_contig106.642.1 ID=mRNA_D-herbacea_F_contig106.642.1|Name=mRNA_D-herbacea_F_contig106.642.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1818bp|location=Sequence derived from alignment at D-herbacea_F_contig106:905520..906429+ (Desmarestia herbacea DmunF female)
AGGGGTCGAGGAGAGAGAGGGGGGCGGTCCGTTGGCGGACGGGGACGTGC
GATGACTTGGACCAACCCTTCCATTTCCCAACAAACGACGCAACCTCGAG
CACCTCCTCCCTCGCGAGGAGGGCACCGAGTGTGGGTAAACTCAGCCGCC
GCGTCGACGAGGAGAAGGGTGAGTGACGGTAGCAGTAGGATAGGAAATGC
GGGTACCCCCAGCACCAACAGCAGTAGCAGTAACTTCAATACAATTGGGA
ATTCTTCACAACAACAATCGCGAGCGGTACCACCGCGTGTCGTTGAAGGA
CGCGGGGGTTCGGCGATTCCGGCCAGATCACCACGGCCAGGGGCGATGGG
AGCGCGAATAGGGGGGGGAGCGATGGTATCAGCGGTTGACAGTCGACGCC
CTAATTTCAGCGTCGGCGCATCCAAGGCGGGAAATCGCGTTTGGACTAAA
AGTACCGGGGTGACAAATGCCGCTGTCAGCACGAGTGCAACTGGCTCGAT
GATGGCGACGGTCTCTAACAGCACGCCATCTACTGCTGCTGTGTCCGCAG
CGACGACGACGGTCAACAGAACGCCCAGGACCATGCCTCTTCCTGGGCAA
GGGTCGTCTAGCGGGGCACGTCTTCCGTTTGCGAGGCGACCCTCTCGCGT
CGCATCCGCAGCAGTCCGAGGCGGGAGCATCAGGGATGGCAGCAGAGATT
CGGCACCCAGAAAACAGAGGAATGTCCACCTGGTCTGGACGAACAAGATG
CGAGACGCTTTGGCTTCCGCCCCGACTGCTGCTGTTGCTGCCCCGACGGC
GTCTGTACCGAACCTACAACCGCCCGCAGTTGCCATCCGCACCAAACTGG
CGACGAAACAGCCGGATGAGGTTAGTGGGACTGGGCGGATGGCAGGGGGA
GAAGGAGGAAGGGGTCGAGGAGAGAGAGGGGGGCGGTCCGTTGGCGGACG
GGGACGTGCGATGACTTGGACCAACCCTTCCATTTCCCAACAAACGACGC
AACCTCGAGCACCTCCTCCCTCGCGAGGAGGGCACCGAGTGTGGGTAAAC
TCAGCCGCCGCGTCGACGAGGAGAAGGGTGAGTGACGGTAGCAGTAGGAT
AGGAAATGCGGGTACCCCCAGCACCAACAGCAGTAGCAGTAACTTCAATA
CAATTGGGAATTCTTCACAACAACAATCGCGAGCGGTACCACCGCGTGTC
GTTGAAGGACGCGGGGGTTCGGCGATTCCGGCCAGATCACCACGGCCAGG
GGCGATGGGAGCGCGAATAGGGGGGGGAGCGATGGTATCAGCGGTTGACA
GTCGACGCCCTAATTTCAGCGTCGGCGCATCCAAGGCGGGAAATCGCGTT
TGGACTAAAAGTACCGGGGTGACAAATGCCGCTGTCAGCACGAGTGCAAC
TGGCTCGATGATGGCGACGGTCTCTAACAGCACGCCATCTACTGCTGCTG
TGTCCGCAGCGACGACGACGGTCAACAGAACGCCCAGGACCATGCCTCTT
CCTGGGCAAGGGTCGTCTAGCGGGGCACGTCTTCCGTTTGCGAGGCGACC
CTCTCGCGTCGCATCCGCAGCAGTCCGAGGCGGGAGCATCAGGGATGGCA
GCAGAGATTCGGCACCCAGAAAACAGAGGAATGTCCACCTGGTCTGGACG
AACAAGATGCGAGACGCTTTGGCTTCCGCCCCGACTGCTGCTGTTGCTGC
CCCGACGGCGTCTGTACCGAACCTACAACCGCCCGCAGTTGCCATCCGCA
CCAAACTGGCGACGAAACAGCCGGATGAGGTTAGTGGGACTGGGCGGATG
GCAGGGGGAGAAGGAGGA
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