mRNA_D-herbacea_F_contig106.639.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.639.1
Unique NamemRNA_D-herbacea_F_contig106.639.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:864143..864727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.4824195-CDS-D-herbacea_F_contig106:864142..8644691622927469.4824195-CDS-D-herbacea_F_contig106:864142..864469Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 864143..864469 +
1690790187.4824436-CDS-D-herbacea_F_contig106:864142..8644691690790187.4824436-CDS-D-herbacea_F_contig106:864142..864469Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 864143..864469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.4957852-UTR-D-herbacea_F_contig106:864469..8647271622927469.4957852-UTR-D-herbacea_F_contig106:864469..864727Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 864470..864727 +
1690790187.4911628-UTR-D-herbacea_F_contig106:864469..8647271690790187.4911628-UTR-D-herbacea_F_contig106:864469..864727Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 864470..864727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.639.1prot_D-herbacea_F_contig106.639.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 864143..864469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.639.1

>prot_D-herbacea_F_contig106.639.1 ID=prot_D-herbacea_F_contig106.639.1|Name=mRNA_D-herbacea_F_contig106.639.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=109bp
PLAPGEVGADGVAPGTAVFKLLPATSTPEESVPPVATVDSLVLITWRGFV
PITAAFPSLLLAPVALQELCSRFLRPLSPLFGSDDAPDSTSASDCLSRLP
GSGLPSPF*
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mRNA from alignment at D-herbacea_F_contig106:864143..864727+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.639.1 ID=mRNA_D-herbacea_F_contig106.639.1|Name=mRNA_D-herbacea_F_contig106.639.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=585bp|location=Sequence derived from alignment at D-herbacea_F_contig106:864143..864727+ (Desmarestia herbacea DmunF female)
CCGCTAGCGCCAGGAGAGGTAGGGGCGGACGGAGTAGCCCCCGGTACAGC
AGTATTCAAACTCTTGCCAGCCACATCAACACCTGAGGAATCAGTGCCTC
CCGTCGCGACAGTAGACTCTCTGGTGCTAATCACCTGGCGTGGCTTTGTC
CCCATAACAGCTGCCTTCCCCTCCTTACTCTTGGCTCCCGTCGCATTACA
AGAACTTTGCTCCCGCTTCTTACGGCCTCTGTCTCCGCTTTTCGGGAGTG
ACGACGCGCCTGATTCTACGTCAGCAAGCGATTGCTTGTCCCGGTTGCCC
GGCAGTGGTTTACCCTCGCCTTTCTGAGCACCTTTCCTCTTCACCTCAGC
TACGAAAGGCTTTTTGGTCCTATTCATAATTCTCCCTCCCCCGTCAGGGG
ATGCTGTCCGTTTCTTCGCCGGTTGGGCAGCAGTTCCACGCGTTTCTTCT
TCGTTCGACGGTGTGCCCTGTACCGCGGTTTTGGCGCTCGAAGTTTGATC
AGGATTAATCACCGATGACCCCTCTCCCATTGCCGCCGCCGCCACGGGAT
GGTCTACGGAGGAAGATGCCTTCGCGACTGTACCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:864143..864727+

>mRNA_D-herbacea_F_contig106.639.1 ID=mRNA_D-herbacea_F_contig106.639.1|Name=mRNA_D-herbacea_F_contig106.639.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=654bp|location=Sequence derived from alignment at D-herbacea_F_contig106:864143..864727+ (Desmarestia herbacea DmunF female)
CCGCTAGCGCCAGGAGAGGTAGGGGCGGACGGAGTAGCCCCCGGTACAGC
AGTATTCAAACTCTTGCCAGCCACATCAACACCTGAGGAATCAGTGCCTC
CCGTCGCGACAGTAGACTCTCTGGTGCTAATCACCTGGCGTGGCTTTGTC
CCCATAACAGCTGCCTTCCCCTCCTTACTCTTGGCTCCCGTCGCATTACA
AGAACTTTGCTCCCGCTTCTTACGGCCTCTGTCTCCGCTTTTCGGGAGTG
ACGACGCGCCTGATTCTACGTCAGCAAGCGATTGCTTGTCCCGGTTGCCC
GGCAGTGGTTTACCCTCGCCTTTCTGACCGCTAGCGCCAGGAGAGGTAGG
GGCGGACGGAGTAGCCCCCGGTACAGCAGTATTCAAACTCTTGCCAGCCA
CATCAACACCTGAGGAATCAGTGCCTCCCGTCGCGACAGTAGACTCTCTG
GTGCTAATCACCTGGCGTGGCTTTGTCCCCATAACAGCTGCCTTCCCCTC
CTTACTCTTGGCTCCCGTCGCATTACAAGAACTTTGCTCCCGCTTCTTAC
GGCCTCTGTCTCCGCTTTTCGGGAGTGACGACGCGCCTGATTCTACGTCA
GCAAGCGATTGCTTGTCCCGGTTGCCCGGCAGTGGTTTACCCTCGCCTTT
CTGA
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