mRNA_D-herbacea_F_contig106.611.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.611.1
Unique NamemRNA_D-herbacea_F_contig106.611.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:195146..196019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size454
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.611.1prot_D-herbacea_F_contig106.611.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 195146..195961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.8754644-CDS-D-herbacea_F_contig106:195145..1955031622927468.8754644-CDS-D-herbacea_F_contig106:195145..195503Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 195146..195503 -
1690790187.124857-CDS-D-herbacea_F_contig106:195145..1955031690790187.124857-CDS-D-herbacea_F_contig106:195145..195503Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 195146..195503 -
1622927468.8846538-CDS-D-herbacea_F_contig106:195923..1959611622927468.8846538-CDS-D-herbacea_F_contig106:195923..195961Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 195924..195961 -
1690790187.1339-CDS-D-herbacea_F_contig106:195923..1959611690790187.1339-CDS-D-herbacea_F_contig106:195923..195961Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 195924..195961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.8945918-UTR-D-herbacea_F_contig106:195961..1960191622927468.8945918-UTR-D-herbacea_F_contig106:195961..196019Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 195962..196019 -
1690790187.1423595-UTR-D-herbacea_F_contig106:195961..1960191690790187.1423595-UTR-D-herbacea_F_contig106:195961..196019Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 195962..196019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.611.1

>prot_D-herbacea_F_contig106.611.1 ID=prot_D-herbacea_F_contig106.611.1|Name=mRNA_D-herbacea_F_contig106.611.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=132bp
MWGRKGAAISIKRDDLSSARGEGLCAHAGLDQKEGGDMAAGKEESAIPDR
PRCRSWAQVSPDSPPMRQRTAPWERASTGVVPSRGRRVVAPGADNNTRSG
GGSGRITWRWPSRRLEHSPASLGSSDECLSSP
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mRNA from alignment at D-herbacea_F_contig106:195146..196019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.611.1 ID=mRNA_D-herbacea_F_contig106.611.1|Name=mRNA_D-herbacea_F_contig106.611.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=874bp|location=Sequence derived from alignment at D-herbacea_F_contig106:195146..196019- (Desmarestia herbacea DmunF female)
GGATAGCCTCGTAAGGACAGACAGCGGGTGACAACCACGTGAAGCATCCT
CGACCTTCATGTGGGGTCGAAAGGGTGCCGCCATAAGTATTAAGAGGTAA
GGATGACGCCCTTCGGGTGTTTTAGGTGACTCCAGGTCTGATTTTGCCGC
AAGGGTTCGTGATACTACTGCTACTGCTTTGTTGTTGTTGTACATAAACA
ATAAATTCAGATCTACACAACAAGCCTCGTGGTAACTGGGTAGATGGCAC
GCCTAGAGTCCCTCGTACTAGCATGCTGTCACTGCTGTTGTCTACGTAGT
TGTGGTCATCATGCTTCTCTGGCTTTAGGTCTGGGGCACATGTTGCATCG
CACACGTAGATTGAAACTTATCGCCGGTTTTGTGTGATCCTTCTGTTTCG
ATTGTTGTCTGTGAAACGCCCATTCTTGTTGGCCCGATGTTCGTGTCTGC
TGTGCTGCTGTCTGTGACACATTGTGTGACGACGGGTCTGTGGCTACTAC
TGTTGTGACTCGCTAGGGACGACTTATCTTCTGCTCGGGGAGAAGGATTA
TGCGCCCATGCTGGATTAGATCAGAAGGAGGGAGGGGACATGGCGGCGGG
GAAGGAGGAGAGTGCGATTCCAGATCGCCCGCGCTGTAGGTCCTGGGCGC
AGGTCTCGCCAGACAGCCCTCCGATGAGGCAAAGGACTGCACCGTGGGAA
CGAGCGTCTACTGGTGTTGTACCGAGCAGGGGTCGTCGTGTAGTCGCACC
AGGAGCGGACAACAACACTAGAAGCGGGGGAGGAAGCGGCAGGATCACGT
GGAGATGGCCGTCTCGGCGCCTCGAGCACAGCCCCGCCTCCTTGGGGTCG
AGCGACGAGTGTCTCTCCTCTCCG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:195146..196019-

>mRNA_D-herbacea_F_contig106.611.1 ID=mRNA_D-herbacea_F_contig106.611.1|Name=mRNA_D-herbacea_F_contig106.611.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=792bp|location=Sequence derived from alignment at D-herbacea_F_contig106:195146..196019- (Desmarestia herbacea DmunF female)
ATGTGGGGTCGAAAGGGTGCCGCCATAAGTATTAAGAGATGTGGGGTCGA
AAGGGTGCCGCCATAAGTATTAAGAGGGACGACTTATCTTCTGCTCGGGG
AGAAGGATTATGCGCCCATGCTGGATTAGATCAGAAGGAGGGAGGGGACA
TGGCGGCGGGGAAGGAGGAGAGTGCGATTCCAGATCGCCCGCGCTGTAGG
TCCTGGGCGCAGGTCTCGCCAGACAGCCCTCCGATGAGGCAAAGGACTGC
ACCGTGGGAACGAGCGTCTACTGGTGTTGTACCGAGCAGGGGTCGTCGTG
TAGTCGCACCAGGAGCGGACAACAACACTAGAAGCGGGGGAGGAAGCGGC
AGGATCACGTGGAGATGGCCGTCTCGGCGCCTCGAGCACAGCCCCGCCTC
CTTGGGGTCGAGCGACGAGTGTCTCTCCTCTCCGGGACGACTTATCTTCT
GCTCGGGGAGAAGGATTATGCGCCCATGCTGGATTAGATCAGAAGGAGGG
AGGGGACATGGCGGCGGGGAAGGAGGAGAGTGCGATTCCAGATCGCCCGC
GCTGTAGGTCCTGGGCGCAGGTCTCGCCAGACAGCCCTCCGATGAGGCAA
AGGACTGCACCGTGGGAACGAGCGTCTACTGGTGTTGTACCGAGCAGGGG
TCGTCGTGTAGTCGCACCAGGAGCGGACAACAACACTAGAAGCGGGGGAG
GAAGCGGCAGGATCACGTGGAGATGGCCGTCTCGGCGCCTCGAGCACAGC
CCCGCCTCCTTGGGGTCGAGCGACGAGTGTCTCTCCTCTCCG
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