mRNA_D-herbacea_F_contig106.609.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.609.1
Unique NamemRNA_D-herbacea_F_contig106.609.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig106.609.1 vs. uniprot
Match: A0A6H5KPI6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPI6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.320e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:   42 ESIRKEASRRYMTR-KSTSREEKDVCTLCHKEWRWYRLRGKHTCCSCHKLFCH--SCGDVTHSFGACPVGGTCMCNNCL 269
            +S+R+E ++R M    S+SR++KDVC  C KEWRWYR RGKHTCC CH+ FC    CG  +H+FGACPVGGTCMC++CL
Sbjct:  551 DSVRRERAKRMMMYGHSSSRDDKDVCKECGKEWRWYR-RGKHTCCKCHEQFCDRKECGSHSHAFGACPVGGTCMCSSCL 628
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPI6_9PHAE5.320e-2360.76EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:188563..190147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size454
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.609.1prot_D-herbacea_F_contig106.609.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 188678..190039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.8059406-UTR-D-herbacea_F_contig106:188562..1886771622927468.8059406-UTR-D-herbacea_F_contig106:188562..188677Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 188563..188677 -
1690790187.0843098-UTR-D-herbacea_F_contig106:188562..1886771690790187.0843098-UTR-D-herbacea_F_contig106:188562..188677Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 188563..188677 -
1622927468.8373306-UTR-D-herbacea_F_contig106:190039..1901471622927468.8373306-UTR-D-herbacea_F_contig106:190039..190147Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 190040..190147 -
1690790187.112612-UTR-D-herbacea_F_contig106:190039..1901471690790187.112612-UTR-D-herbacea_F_contig106:190039..190147Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 190040..190147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.8155906-CDS-D-herbacea_F_contig106:188677..1888741622927468.8155906-CDS-D-herbacea_F_contig106:188677..188874Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 188678..188874 -
1690790187.0947726-CDS-D-herbacea_F_contig106:188677..1888741690790187.0947726-CDS-D-herbacea_F_contig106:188677..188874Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 188678..188874 -
1622927468.8254004-CDS-D-herbacea_F_contig106:190005..1900391622927468.8254004-CDS-D-herbacea_F_contig106:190005..190039Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 190006..190039 -
1690790187.103467-CDS-D-herbacea_F_contig106:190005..1900391690790187.103467-CDS-D-herbacea_F_contig106:190005..190039Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 190006..190039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.609.1

>prot_D-herbacea_F_contig106.609.1 ID=prot_D-herbacea_F_contig106.609.1|Name=mRNA_D-herbacea_F_contig106.609.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=77bp
MCARCVTRSGDGTGYAGNTRAVRATSFSAILVGMLRTLLGRVPLAGRACA
TTALGRWTGDEIWKKQERFGMSVFQM*
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mRNA from alignment at D-herbacea_F_contig106:188563..190147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.609.1 ID=mRNA_D-herbacea_F_contig106.609.1|Name=mRNA_D-herbacea_F_contig106.609.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1585bp|location=Sequence derived from alignment at D-herbacea_F_contig106:188563..190147- (Desmarestia herbacea DmunF female)
GCAGGGAGTCTTCTAGGAGGTTGACCGAGATTACCGCTGCGGAAAGCATT
CGGAAAGAAGCGTCGAGGCGATACATGACCCGAAAGAGCACGTCGCGGGA
GGAGAAGGATGTGTGCACGTTGTGTCACAAGGAGTGGAGATGGTGAGTCC
ACTGACTGTGTATATTTTGTTTTGCGTTACGAGTACAACAGCGGTAGACG
GAGTGAAACCAGCCCTGTGATACTATCTATCATAATAGTAGGTCCGCCAC
CAGAACAGCACCATCAACGTTATTAACGATAGCTTCCATACATAAGTGAG
AGTTACCATGTGCCACTCCATGTATGGTAAGCAACGTTACCTTCTTCGCT
TTCACTCATCAGATCGATCACCAGACGTTAGACACAATAATACCGGAATA
ATGAGACTTATGTTCGGTCGGGAGATAGCTCTAGAGTGTATGCCACAAGC
AGCAGTAGATAGACTATAGACTACCCTTCTTTTGTTAATCAACTTGTTTT
CCAAGTTGATACTCGACAGCATACGAAGTATATCCTTCTTCTCCTTCATC
TCTTAGCGTTATTTTTTGCCTCGAGTCTTTCCTACCTTTACACTTTCCGT
GATTGCAATCCCATCTTCTGGCAGAGCGAAGCGGGGTGGCGACAGCCGCC
CCGCGAAGCGGACCCCTTCTTTATGTATATATATACAAGTATATGTTTAT
GTATACATAATTTAGCACAGGAAAAACAGTATGCGCTACTACAATCCTGT
GATACAACAACAGTAGATGGAGTGAGATCACAGAAATGGCACAGAAAAAA
CATATTTATTGTTTTTGTCCGTGTTTGTGTTTCAGTCTGTAAGTTTTGTG
TGTTTGTGGATGCTTGCTGGCTATTGTATATGGAGCTCTGTACTTACAAC
AGCTCGTGTATTGGTAGAGCAGTGGAGATTGATTGCAACGGGGGACGGCT
TCAAGGATTGTTGTTGGGTTTCTGCTGTCTTGTAGATGCGATTGCCTCAC
GGCTTATGGCCGACACGGCTGTGTTGTGCCGGTTACTACACCGCCATTGC
TGGCACCGTTGTGACATCATTGCGGTTGCTACCCGCTAGTATTGGTGCTG
TTATTATCAACACCTCCCTCAGTCGCTGTCGTTGCTATGATATCAATGCA
CGGCTTTCGCTGACATTGCTGTCTTGTAGATACGGCTATGTGACACCGGT
CCCTCACTATTTATTTCTTTTTCACGTGCGCACGCGCTCGCTCTTGTTTT
GGGTGTCGTTTGTTGTGCACCAGGTACAGGTTACGCGGGAAACACACGTG
CTGTTCGTGCCACAAGCTTTTCTGCCATTCTTGTGGGGATGTTACGCACT
CTTTTGGGGCGTGTCCCGTTGGCGGGACGTGCATGTGCAACAACTGCCTT
GGGTCGATGGACCGGTGATGAAATATGGAAGAAACAGGAGCGTTTTGGCA
TGAGTGTGTTTCAGATGTAGAGAGGCTGTTTTTGCCCGGAGGAGGGGGGG
GTGAGGGGGAGCCTGCATGCCCCATGTGATGGATGATGGGCAAGTGTGGT
GAAAGTGGAAGCCAATGGACAAAGTTATGCCGATC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:188563..190147-

>mRNA_D-herbacea_F_contig106.609.1 ID=mRNA_D-herbacea_F_contig106.609.1|Name=mRNA_D-herbacea_F_contig106.609.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=462bp|location=Sequence derived from alignment at D-herbacea_F_contig106:188563..190147- (Desmarestia herbacea DmunF female)
ATGTGTGCACGTTGTGTCACAAGGAGTGGAGATGATGTGTGCACGTTGTG
TCACAAGGAGTGGAGATGGTACAGGTTACGCGGGAAACACACGTGCTGTT
CGTGCCACAAGCTTTTCTGCCATTCTTGTGGGGATGTTACGCACTCTTTT
GGGGCGTGTCCCGTTGGCGGGACGTGCATGTGCAACAACTGCCTTGGGTC
GATGGACCGGTGATGAAATATGGAAGAAACAGGAGCGTTTTGGCATGAGT
GTGTTTCAGATGTAGGTACAGGTTACGCGGGAAACACACGTGCTGTTCGT
GCCACAAGCTTTTCTGCCATTCTTGTGGGGATGTTACGCACTCTTTTGGG
GCGTGTCCCGTTGGCGGGACGTGCATGTGCAACAACTGCCTTGGGTCGAT
GGACCGGTGATGAAATATGGAAGAAACAGGAGCGTTTTGGCATGAGTGTG
TTTCAGATGTAG
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