mRNA_D-herbacea_F_contig106.604.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.604.1
Unique NamemRNA_D-herbacea_F_contig106.604.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:63603..64352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size750
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.2984302-UTR-D-herbacea_F_contig106:63602..638931622927469.2984302-UTR-D-herbacea_F_contig106:63602..63893Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 63603..63893 +
1690790187.3914506-UTR-D-herbacea_F_contig106:63602..638931690790187.3914506-UTR-D-herbacea_F_contig106:63602..63893Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 63603..63893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.3095336-CDS-D-herbacea_F_contig106:63893..643521622927469.3095336-CDS-D-herbacea_F_contig106:63893..64352Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 63894..64352 +
1690790187.4006166-CDS-D-herbacea_F_contig106:63893..643521690790187.4006166-CDS-D-herbacea_F_contig106:63893..64352Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 63894..64352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.604.1prot_D-herbacea_F_contig106.604.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 63894..64352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.604.1

>prot_D-herbacea_F_contig106.604.1 ID=prot_D-herbacea_F_contig106.604.1|Name=mRNA_D-herbacea_F_contig106.604.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=153bp
MPSSIYMYVSQHPIPPFPRIVAYTVCRALWTSHVISARLLTCQHHHLLSV
YPACHAPLHTRVHLRSSWQRYSRRVCPPLVLVVRRADARNNQGIEHAPQG
VREVDGGVVNPCRELRVRKYPQDAGHAGTKLWLWVEHGRNKLLHLFLRLV
WE*
back to top

mRNA from alignment at D-herbacea_F_contig106:63603..64352+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.604.1 ID=mRNA_D-herbacea_F_contig106.604.1|Name=mRNA_D-herbacea_F_contig106.604.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=750bp|location=Sequence derived from alignment at D-herbacea_F_contig106:63603..64352+ (Desmarestia herbacea DmunF female)
CCCGTTTGGGCGTCAAATAAACATGAAGTTATCGTCGTTGTGTTCGTGTG
GGCAGCTATAGTGCGCCAAAGACGCATCATCAACGAATGGCAGCATACCG
CTCAACAACAAAATCATGAAACCACAAAAAAACGCTAAAGACGGGAACGG
GGAGGAAGTTCCTCCTTTTTCCCGTGTTGTACGGTACACGATGATGATAG
ATATGGCATGACGTGCACACTCCGAGGGGCCTGCACACAAAAAGGCCACC
ATCATACATACTCGAAGTACATACTTTAGTACCGTTGCAATATGCCCTCA
TCCATATACATGTATGTGTCACAACACCCAATCCCTCCGTTCCCACGCAT
AGTGGCATATACAGTGTGTAGAGCTCTATGGACATCGCATGTCATCTCCG
CCAGACTACTTACTTGTCAACATCATCATCTCTTATCGGTATACCCTGCG
TGTCATGCGCCCCTCCACACTAGAGTCCATCTACGCTCTAGTTGGCAGAG
ATACTCGCGGCGCGTTTGTCCACCACTCGTTCTCGTTGTCCGTCGTGCCG
ATGCCCGCAACAACCAAGGTATTGAGCACGCTCCGCAGGGAGTCCGGGAG
GTTGACGGGGGGGTCGTAAATCCTTGCAGAGAGCTCAGGGTACGCAAGTA
CCCCCAGGATGCTGGTCATGCTGGGACGAAGCTTTGGCTCTGGGTGGAGC
ATGGCCGAAACAAACTTCTTCACCTATTTTTGCGGTTGGTATGGGAGTGA
back to top

Coding sequence (CDS) from alignment at D-herbacea_F_contig106:63603..64352+

>mRNA_D-herbacea_F_contig106.604.1 ID=mRNA_D-herbacea_F_contig106.604.1|Name=mRNA_D-herbacea_F_contig106.604.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=918bp|location=Sequence derived from alignment at D-herbacea_F_contig106:63603..64352+ (Desmarestia herbacea DmunF female)
ATGCCCTCATCCATATACATGTATGTGTCACAACACCCAATCCCTCCGTT
CCCACGCATAGTGGCATATACAGTGTGTAGAGCTCTATGGACATCGCATG
TCATCTCCGCCAGACTACTTACTTGTCAACATCATCATCTCTTATCGGTA
TACCCTGCGTGTCATGCGCCCCTCCACACTAGAGTCCATCTACGCTCTAG
TTGGCAGAGATACTCGCGGCGCGTTTGTCCACCACTCGTTCTCGTTGTCC
GTCGTGCCGATGCCCGCAACAACCAAGGTATTGAGCACGCTCCGCAGGGA
GTCCGGGAGGTTGACGGGGGGGTCGTAAATCCTTGCAGAGAGCTCAGGGT
ACGCAAGTACCCCCAGGATGCTGGTCATGCTGGGACGAAGCTTTGGCTCT
GGGTGGAGCATGGCCGAAACAAACTTCTTCACCTATTTTTGCGGTTGGTA
TGGGAGTGAATGCCCTCATCCATATACATGTATGTGTCACAACACCCAAT
CCCTCCGTTCCCACGCATAGTGGCATATACAGTGTGTAGAGCTCTATGGA
CATCGCATGTCATCTCCGCCAGACTACTTACTTGTCAACATCATCATCTC
TTATCGGTATACCCTGCGTGTCATGCGCCCCTCCACACTAGAGTCCATCT
ACGCTCTAGTTGGCAGAGATACTCGCGGCGCGTTTGTCCACCACTCGTTC
TCGTTGTCCGTCGTGCCGATGCCCGCAACAACCAAGGTATTGAGCACGCT
CCGCAGGGAGTCCGGGAGGTTGACGGGGGGGTCGTAAATCCTTGCAGAGA
GCTCAGGGTACGCAAGTACCCCCAGGATGCTGGTCATGCTGGGACGAAGC
TTTGGCTCTGGGTGGAGCATGGCCGAAACAAACTTCTTCACCTATTTTTG
CGGTTGGTATGGGAGTGA
back to top