mRNA_D-herbacea_F_contig106.602.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig106.602.1
Unique NamemRNA_D-herbacea_F_contig106.602.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig106.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig106contigD-herbacea_F_contig106:48487..48997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.2545404-UTR-D-herbacea_F_contig106:48486..486041622927469.2545404-UTR-D-herbacea_F_contig106:48486..48604Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 48487..48604 +
1690790187.3750463-UTR-D-herbacea_F_contig106:48486..486041690790187.3750463-UTR-D-herbacea_F_contig106:48486..48604Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig106 48487..48604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927469.264387-CDS-D-herbacea_F_contig106:48604..489971622927469.264387-CDS-D-herbacea_F_contig106:48604..48997Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 48605..48997 +
1690790187.3833158-CDS-D-herbacea_F_contig106:48604..489971690790187.3833158-CDS-D-herbacea_F_contig106:48604..48997Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig106 48605..48997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig106.602.1prot_D-herbacea_F_contig106.602.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig106 48605..48997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig106.602.1

>prot_D-herbacea_F_contig106.602.1 ID=prot_D-herbacea_F_contig106.602.1|Name=mRNA_D-herbacea_F_contig106.602.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=131bp
MYRARGTAIGVLDYLHRAPVVSRMQVVHFFSVFFCTVVRRFLVCVRTAAV
VGHHRLIWFDSAQFDSCGTERNLETSSQKTRCVSHRGVTWLVIFICKKKN
QQLLLYSLLPAVDTSCQLLLSQMQLGEFDV*
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mRNA from alignment at D-herbacea_F_contig106:48487..48997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig106.602.1 ID=mRNA_D-herbacea_F_contig106.602.1|Name=mRNA_D-herbacea_F_contig106.602.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=511bp|location=Sequence derived from alignment at D-herbacea_F_contig106:48487..48997+ (Desmarestia herbacea DmunF female)
GTCCATTTAGTTTTCAGAGGTATATATTTTTTATACCTGTTATCATCCGT
GTTTTTTTTTTTTGCTATTATGTTGTGCTTGGAAGAATGCCATTGCACGA
TAAATTTGGCATGATCGAATGTACCGTGCACGAGGCACTGCTATTGGAGT
GTTGGATTATCTTCATCGCGCCCCTGTCGTGTCTCGAATGCAAGTCGTTC
ATTTTTTTTCTGTCTTTTTTTGTACTGTTGTACGTAGGTTTTTAGTTTGT
GTTCGTACCGCAGCAGTTGTCGGCCATCACAGGTTGATTTGGTTCGATTC
GGCTCAATTCGATTCGTGCGGAACGGAACGCAACCTTGAGACGTCGTCCC
AAAAAACACGTTGCGTCAGTCACCGTGGGGTGACTTGGCTTGTCATATTT
ATCTGCAAAAAGAAAAATCAACAACTACTACTGTACTCTCTTTTGCCTGC
TGTTGATACTTCCTGCCAGCTGCTCCTGTCTCAGATGCAACTGGGGGAGT
TCGATGTGTGA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig106:48487..48997+

>mRNA_D-herbacea_F_contig106.602.1 ID=mRNA_D-herbacea_F_contig106.602.1|Name=mRNA_D-herbacea_F_contig106.602.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=786bp|location=Sequence derived from alignment at D-herbacea_F_contig106:48487..48997+ (Desmarestia herbacea DmunF female)
ATGTACCGTGCACGAGGCACTGCTATTGGAGTGTTGGATTATCTTCATCG
CGCCCCTGTCGTGTCTCGAATGCAAGTCGTTCATTTTTTTTCTGTCTTTT
TTTGTACTGTTGTACGTAGGTTTTTAGTTTGTGTTCGTACCGCAGCAGTT
GTCGGCCATCACAGGTTGATTTGGTTCGATTCGGCTCAATTCGATTCGTG
CGGAACGGAACGCAACCTTGAGACGTCGTCCCAAAAAACACGTTGCGTCA
GTCACCGTGGGGTGACTTGGCTTGTCATATTTATCTGCAAAAAGAAAAAT
CAACAACTACTACTGTACTCTCTTTTGCCTGCTGTTGATACTTCCTGCCA
GCTGCTCCTGTCTCAGATGCAACTGGGGGAGTTCGATGTGTGAATGTACC
GTGCACGAGGCACTGCTATTGGAGTGTTGGATTATCTTCATCGCGCCCCT
GTCGTGTCTCGAATGCAAGTCGTTCATTTTTTTTCTGTCTTTTTTTGTAC
TGTTGTACGTAGGTTTTTAGTTTGTGTTCGTACCGCAGCAGTTGTCGGCC
ATCACAGGTTGATTTGGTTCGATTCGGCTCAATTCGATTCGTGCGGAACG
GAACGCAACCTTGAGACGTCGTCCCAAAAAACACGTTGCGTCAGTCACCG
TGGGGTGACTTGGCTTGTCATATTTATCTGCAAAAAGAAAAATCAACAAC
TACTACTGTACTCTCTTTTGCCTGCTGTTGATACTTCCTGCCAGCTGCTC
CTGTCTCAGATGCAACTGGGGGAGTTCGATGTGTGA
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