mRNA_D-herbacea_F_contig1058.600.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1058.600.1
Unique NamemRNA_D-herbacea_F_contig1058.600.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1058.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1058contigD-herbacea_F_contig1058:28062..28758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size697
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1058.600.1prot_D-herbacea_F_contig1058.600.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1058 28101..28601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.752293-UTR-D-herbacea_F_contig1058:28061..281001622927468.752293-UTR-D-herbacea_F_contig1058:28061..28100Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1058 28062..28100 +
1690790187.047747-UTR-D-herbacea_F_contig1058:28061..281001690790187.047747-UTR-D-herbacea_F_contig1058:28061..28100Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1058 28062..28100 +
1622927468.7738216-UTR-D-herbacea_F_contig1058:28601..287581622927468.7738216-UTR-D-herbacea_F_contig1058:28601..28758Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1058 28602..28758 +
1690790187.0749257-UTR-D-herbacea_F_contig1058:28601..287581690790187.0749257-UTR-D-herbacea_F_contig1058:28601..28758Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig1058 28602..28758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.7646768-CDS-D-herbacea_F_contig1058:28100..286011622927468.7646768-CDS-D-herbacea_F_contig1058:28100..28601Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1058 28101..28601 +
1690790187.0606177-CDS-D-herbacea_F_contig1058:28100..286011690790187.0606177-CDS-D-herbacea_F_contig1058:28100..28601Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1058 28101..28601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1058.600.1

>prot_D-herbacea_F_contig1058.600.1 ID=prot_D-herbacea_F_contig1058.600.1|Name=mRNA_D-herbacea_F_contig1058.600.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=167bp
MQAGKRRLFTVCGGPPQLVVAPSQTQNLVSGLSCWCAFFADTEIGVRCSD
FWDARARRQFPESVDLQPQLVLFTVKREGRPESVSNVHVYFGLGGPVRLC
HIVVLSCLYLYAFGVSLDIYCRFYPRHFRSVILDVPDPVCLFACHDIMKM
PMIVTPDFRPLCILDT*
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mRNA from alignment at D-herbacea_F_contig1058:28062..28758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1058.600.1 ID=mRNA_D-herbacea_F_contig1058.600.1|Name=mRNA_D-herbacea_F_contig1058.600.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=697bp|location=Sequence derived from alignment at D-herbacea_F_contig1058:28062..28758+ (Desmarestia herbacea DmunF female)
CAGAGCCCATGAGAGCAGGCTTACATATTATGTCTCCATATGCAAGCAGG
TAAGAGGAGATTGTTTACTGTGTGCGGGGGCCCGCCTCAGTTGGTTGTTG
CGCCTTCACAGACACAGAATTTGGTGTCAGGGCTCTCTTGTTGGTGCGCC
TTTTTCGCCGACACAGAAATTGGTGTCAGGTGCTCAGATTTCTGGGATGC
GAGAGCACGGCGGCAGTTCCCAGAGTCGGTAGATCTCCAGCCGCAGCTAG
TACTGTTCACCGTTAAGCGAGAGGGTCGTCCAGAGTCTGTTTCGAATGTT
CACGTTTACTTTGGCTTGGGCGGGCCGGTTCGTTTGTGCCACATTGTAGT
GTTGTCATGTTTATACTTGTACGCGTTCGGGGTATCGTTGGATATTTATT
GTAGGTTTTATCCTAGACATTTCAGATCCGTTATTTTAGATGTGCCAGAT
CCAGTATGTCTTTTCGCATGTCATGACATCATGAAGATGCCTATGATTGT
TACTCCAGACTTCAGACCCCTCTGCATACTAGATACGTAAGTCGTTTGCA
CGCGCACCGTCGCATATACGAGATGCCGAACTGTTCGGGTATCACTAGAG
CTTAAACTTGTTTCACCTCATGCAATACACGAAGTCGCAAGGATTGGTGT
GAGTATCGATTGCCGTGAATCTCCAACCAACCTGTGCTCAACTCTCT
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1058:28062..28758+

>mRNA_D-herbacea_F_contig1058.600.1 ID=mRNA_D-herbacea_F_contig1058.600.1|Name=mRNA_D-herbacea_F_contig1058.600.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1002bp|location=Sequence derived from alignment at D-herbacea_F_contig1058:28062..28758+ (Desmarestia herbacea DmunF female)
ATGCAAGCAGGTAAGAGGAGATTGTTTACTGTGTGCGGGGGCCCGCCTCA
GTTGGTTGTTGCGCCTTCACAGACACAGAATTTGGTGTCAGGGCTCTCTT
GTTGGTGCGCCTTTTTCGCCGACACAGAAATTGGTGTCAGGTGCTCAGAT
TTCTGGGATGCGAGAGCACGGCGGCAGTTCCCAGAGTCGGTAGATCTCCA
GCCGCAGCTAGTACTGTTCACCGTTAAGCGAGAGGGTCGTCCAGAGTCTG
TTTCGAATGTTCACGTTTACTTTGGCTTGGGCGGGCCGGTTCGTTTGTGC
CACATTGTAGTGTTGTCATGTTTATACTTGTACGCGTTCGGGGTATCGTT
GGATATTTATTGTAGGTTTTATCCTAGACATTTCAGATCCGTTATTTTAG
ATGTGCCAGATCCAGTATGTCTTTTCGCATGTCATGACATCATGAAGATG
CCTATGATTGTTACTCCAGACTTCAGACCCCTCTGCATACTAGATACGTA
AATGCAAGCAGGTAAGAGGAGATTGTTTACTGTGTGCGGGGGCCCGCCTC
AGTTGGTTGTTGCGCCTTCACAGACACAGAATTTGGTGTCAGGGCTCTCT
TGTTGGTGCGCCTTTTTCGCCGACACAGAAATTGGTGTCAGGTGCTCAGA
TTTCTGGGATGCGAGAGCACGGCGGCAGTTCCCAGAGTCGGTAGATCTCC
AGCCGCAGCTAGTACTGTTCACCGTTAAGCGAGAGGGTCGTCCAGAGTCT
GTTTCGAATGTTCACGTTTACTTTGGCTTGGGCGGGCCGGTTCGTTTGTG
CCACATTGTAGTGTTGTCATGTTTATACTTGTACGCGTTCGGGGTATCGT
TGGATATTTATTGTAGGTTTTATCCTAGACATTTCAGATCCGTTATTTTA
GATGTGCCAGATCCAGTATGTCTTTTCGCATGTCATGACATCATGAAGAT
GCCTATGATTGTTACTCCAGACTTCAGACCCCTCTGCATACTAGATACGT
AA
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