mRNA_D-herbacea_F_contig1055.599.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.530e-14 Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1
Query: 16 AEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVR 162
AEK+KASQGRVVA+GEGRT S G I C FK GD VKF+EYAP EIK++
Sbjct: 208 AEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIK 256
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1J4WEP9_9BACT (Co-chaperonin GroES n=3 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A1J4WEP9_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 3.540e-7 Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query: 1 WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVRIVQQLI 180
+ P A+KD+ QG+VVAVG G+T S G E K GD V F +Y P ++K+ + LI
Sbjct: 26 FLPHTAQKDEPEQGKVVAVGAGKTMSNGQKKEVEVKVGDLVLFNKYGPNKVKIEGKEYLI 85
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1G2LC94_9BACT (Co-chaperonin GroES n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A1G2LC94_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 5.010e-7 Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 1 WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVRIVQQLI 180
+ P A K++ QG+V+AVG+GRT G + + + G V F +Y P EIKV + LI
Sbjct: 26 YLPDTASKERPEQGKVIAVGDGRTLDSGKVVALKVRAGQKVLFTKYGPNEIKVEGKEYLI 85
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A2M7DD36_9BACT (Co-chaperonin GroES n=1 Tax=bacterium (Candidatus Gribaldobacteria) CG02_land_8_20_14_3_00_41_15 TaxID=2014270 RepID=A0A2M7DD36_9BACT) HSP 1 Score: 50.8 bits (120), Expect = 1.000e-6 Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1
Query: 4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
P++AEK++ QG+++AVG GRT + G K GD V F +Y P E K+
Sbjct: 27 LPESAEKERPEQGKIIAVGPGRTVASGKTIPLHVKVGDKVLFTKYGPNEFKI 78
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: CH10_SYMTH (Co-chaperonin GroES n=4 Tax=Firmicutes TaxID=1239 RepID=CH10_SYMTH) HSP 1 Score: 49.7 bits (117), Expect = 2.910e-6 Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
K+K QG+V+AVG GRT GT E K GD V F +YA TE+K+
Sbjct: 32 KEKPQQGKVIAVGPGRTLESGTKVELEVKEGDTVIFSKYAGTEVKI 77
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A0G1B8C4_9BACT (Co-chaperonin GroES n=2 Tax=unclassified Parcubacteria group TaxID=1794840 RepID=A0A0G1B8C4_9BACT) HSP 1 Score: 49.3 bits (116), Expect = 4.300e-6 Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1
Query: 4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
PQ +K++ QG+VVAVG G+T G K GD V F +Y P EIK+
Sbjct: 30 MPQTGDKERPEQGKVVAVGPGKTGKTGEKIPMSVKKGDLVIFTKYGPNEIKI 81
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A4Q6FR31_9PROT (Co-chaperonin GroES n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6FR31_9PROT) HSP 1 Score: 48.5 bits (114), Expect = 7.920e-6 Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
P AA K+K +GRVVAVG GRT GT+ + K GD V F +Y+ TE+KV
Sbjct: 27 IPDAA-KEKPVEGRVVAVGNGRTLDNGTVQKPDVKSGDTVLFGKYSGTEVKV 77
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5 Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVR 162
K + ++G V+ VG GR S G +A+ + KPGD VKF ++A TEIK++
Sbjct: 191 KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ 237
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1G2P2W5_9BACT (Co-chaperonin GroES n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPLOWO2_12_FULL_43_20 TaxID=1802332 RepID=A0A1G2P2W5_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 1.400e-5 Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1
Query: 4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
P K+K QG+VVAVGEGRT G I + K GD V F +Y ++K+
Sbjct: 37 IPDTVSKEKPEQGKVVAVGEGRTDENGKIIPVKVKVGDVVLFSKYGYDDVKI 88
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A7C4W9M0_9DELT (Co-chaperonin GroES n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4W9M0_9DELT) HSP 1 Score: 46.6 bits (109), Expect = 4.490e-5 Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
K+K S+GRV+AVG+GR GT K GD + F +YA TE+K+
Sbjct: 32 KEKPSEGRVIAVGDGRIKEDGTKIPMELKKGDRILFSKYAGTEVKI 77 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig1055.599.1 >prot_D-herbacea_F_contig1055.599.1 ID=prot_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=60bp WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEback to top mRNA from alignment at D-herbacea_F_contig1055:11787..11966+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig1055.599.1 ID=mRNA_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=180bp|location=Sequence derived from alignment at D-herbacea_F_contig1055:11787..11966+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig1055:11787..11966+ >mRNA_D-herbacea_F_contig1055.599.1 ID=mRNA_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=360bp|location=Sequence derived from alignment at D-herbacea_F_contig1055:11787..11966+ (Desmarestia herbacea DmunF female)back to top |