mRNA_D-herbacea_F_contig1055.599.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig1055.599.1
Unique NamemRNA_D-herbacea_F_contig1055.599.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.530e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   16 AEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVR 162
            AEK+KASQGRVVA+GEGRT S G I  C FK GD VKF+EYAP EIK++
Sbjct:  208 AEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIK 256          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1J4WEP9_9BACT (Co-chaperonin GroES n=3 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A1J4WEP9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.540e-7
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVRIVQQLI 180
            + P  A+KD+  QG+VVAVG G+T S G   E   K GD V F +Y P ++K+   + LI
Sbjct:   26 FLPHTAQKDEPEQGKVVAVGAGKTMSNGQKKEVEVKVGDLVLFNKYGPNKVKIEGKEYLI 85          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1G2LC94_9BACT (Co-chaperonin GroES n=2 Tax=Parcubacteria group TaxID=1794811 RepID=A0A1G2LC94_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 5.010e-7
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    1 WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVRIVQQLI 180
            + P  A K++  QG+V+AVG+GRT   G +   + + G  V F +Y P EIKV   + LI
Sbjct:   26 YLPDTASKERPEQGKVIAVGDGRTLDSGKVVALKVRAGQKVLFTKYGPNEIKVEGKEYLI 85          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A2M7DD36_9BACT (Co-chaperonin GroES n=1 Tax=bacterium (Candidatus Gribaldobacteria) CG02_land_8_20_14_3_00_41_15 TaxID=2014270 RepID=A0A2M7DD36_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 1.000e-6
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
             P++AEK++  QG+++AVG GRT + G       K GD V F +Y P E K+
Sbjct:   27 LPESAEKERPEQGKIIAVGPGRTVASGKTIPLHVKVGDKVLFTKYGPNEFKI 78          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: CH10_SYMTH (Co-chaperonin GroES n=4 Tax=Firmicutes TaxID=1239 RepID=CH10_SYMTH)

HSP 1 Score: 49.7 bits (117), Expect = 2.910e-6
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
            K+K  QG+V+AVG GRT   GT  E   K GD V F +YA TE+K+
Sbjct:   32 KEKPQQGKVIAVGPGRTLESGTKVELEVKEGDTVIFSKYAGTEVKI 77          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A0G1B8C4_9BACT (Co-chaperonin GroES n=2 Tax=unclassified Parcubacteria group TaxID=1794840 RepID=A0A0G1B8C4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.300e-6
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1
Query:    4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
             PQ  +K++  QG+VVAVG G+T   G       K GD V F +Y P EIK+
Sbjct:   30 MPQTGDKERPEQGKVVAVGPGKTGKTGEKIPMSVKKGDLVIFTKYGPNEIKI 81          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A4Q6FR31_9PROT (Co-chaperonin GroES n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6FR31_9PROT)

HSP 1 Score: 48.5 bits (114), Expect = 7.920e-6
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
             P AA K+K  +GRVVAVG GRT   GT+ +   K GD V F +Y+ TE+KV
Sbjct:   27 IPDAA-KEKPVEGRVVAVGNGRTLDNGTVQKPDVKSGDTVLFGKYSGTEVKV 77          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKVR 162
            K + ++G V+ VG GR  S G +A+ + KPGD VKF ++A TEIK++
Sbjct:  191 KARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQ 237          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A1G2P2W5_9BACT (Co-chaperonin GroES n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPLOWO2_12_FULL_43_20 TaxID=1802332 RepID=A0A1G2P2W5_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 1.400e-5
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 1
Query:    4 FPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
             P    K+K  QG+VVAVGEGRT   G I   + K GD V F +Y   ++K+
Sbjct:   37 IPDTVSKEKPEQGKVVAVGEGRTDENGKIIPVKVKVGDVVLFSKYGYDDVKI 88          
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Match: A0A7C4W9M0_9DELT (Co-chaperonin GroES n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4W9M0_9DELT)

HSP 1 Score: 46.6 bits (109), Expect = 4.490e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   22 KDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTEIKV 159
            K+K S+GRV+AVG+GR    GT      K GD + F +YA TE+K+
Sbjct:   32 KEKPSEGRVIAVGDGRIKEDGTKIPMELKKGDRILFSKYAGTEVKI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig1055.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G6K9_ECTSI2.530e-1471.43Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A1J4WEP9_9BACT3.540e-743.33Co-chaperonin GroES n=3 Tax=Bacteria candidate phy... [more]
A0A1G2LC94_9BACT5.010e-740.00Co-chaperonin GroES n=2 Tax=Parcubacteria group Ta... [more]
A0A2M7DD36_9BACT1.000e-642.31Co-chaperonin GroES n=1 Tax=bacterium (Candidatus ... [more]
CH10_SYMTH2.910e-652.17Co-chaperonin GroES n=4 Tax=Firmicutes TaxID=1239 ... [more]
A0A0G1B8C4_9BACT4.300e-644.23Co-chaperonin GroES n=2 Tax=unclassified Parcubact... [more]
A0A4Q6FR31_9PROT7.920e-651.92Co-chaperonin GroES n=1 Tax=Proteobacteria bacteri... [more]
W7TNB8_9STRA1.340e-546.8120 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A1G2P2W5_9BACT1.400e-544.23Co-chaperonin GroES n=1 Tax=Candidatus Taylorbacte... [more]
A0A7C4W9M0_9DELT4.490e-547.83Co-chaperonin GroES n=1 Tax=Deltaproteobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig1055contigD-herbacea_F_contig1055:11787..11966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927468.723129-CDS-D-herbacea_F_contig1055:11786..119661622927468.723129-CDS-D-herbacea_F_contig1055:11786..11966Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1055 11787..11966 +
1690790187.0385244-CDS-D-herbacea_F_contig1055:11786..119661690790187.0385244-CDS-D-herbacea_F_contig1055:11786..11966Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig1055 11787..11966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig1055.599.1prot_D-herbacea_F_contig1055.599.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig1055 11787..11966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig1055.599.1

>prot_D-herbacea_F_contig1055.599.1 ID=prot_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=60bp
WFPQAAEKDKASQGRVVAVGEGRTTSVGTIAECRFKPGDCVKFLEYAPTE
IKVRIVQQLI
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mRNA from alignment at D-herbacea_F_contig1055:11787..11966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig1055.599.1 ID=mRNA_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=180bp|location=Sequence derived from alignment at D-herbacea_F_contig1055:11787..11966+ (Desmarestia herbacea DmunF female)
TGGTTCCCCCAGGCGGCGGAAAAAGACAAGGCCAGCCAGGGACGGGTCGT GGCGGTTGGAGAGGGGCGAACGACCAGCGTGGGTACCATCGCCGAGTGCC GCTTCAAGCCCGGAGACTGCGTGAAGTTCCTCGAGTACGCTCCCACGGAG ATCAAGGTGAGAATCGTACAGCAGTTGATA
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Coding sequence (CDS) from alignment at D-herbacea_F_contig1055:11787..11966+

>mRNA_D-herbacea_F_contig1055.599.1 ID=mRNA_D-herbacea_F_contig1055.599.1|Name=mRNA_D-herbacea_F_contig1055.599.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=360bp|location=Sequence derived from alignment at D-herbacea_F_contig1055:11787..11966+ (Desmarestia herbacea DmunF female)
TGGTTCCCCCAGGCGGCGGAAAAAGACAAGGCCAGCCAGGGACGGGTCGT
GGCGGTTGGAGAGGGGCGAACGACCAGCGTGGGTACCATCGCCGAGTGCC
GCTTCAAGCCCGGAGACTGCGTGAAGTTCCTCGAGTACGCTCCCACGGAG
ATCAAGGTGAGAATCGTACAGCAGTTGATATGGTTCCCCCAGGCGGCGGA
AAAAGACAAGGCCAGCCAGGGACGGGTCGTGGCGGTTGGAGAGGGGCGAA
CGACCAGCGTGGGTACCATCGCCGAGTGCCGCTTCAAGCCCGGAGACTGC
GTGAAGTTCCTCGAGTACGCTCCCACGGAGATCAAGGTGAGAATCGTACA
GCAGTTGATA
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