mRNA_D-herbacea_F_contig105.559.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 1.510e-131 Identity = 207/238 (86.97%), Postives = 220/238 (92.44%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSATYKQGG 825
MRLTAD+I+HARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMD SDNEIKKLDNFPRYKRLSSLLLCNNHVS+I+ DLG LPNLSC+ILTNNKLSTL +L+GL TC KLTMLSLLHNEVVNKQYYRLY INL+PSLKQLDFQKVTVK ESA RLARSQAGQ M++DVA++AEKAKTFTPG A EQKLTDEHRAIYA+RIAKATTVEEIEMLSKKIQAGIIPSA YKQGG
Sbjct: 1 MRLTADIIMHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVKER-ESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYKQGG 237
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.310e-67 Identity = 131/231 (56.71%), Postives = 165/231 (71.43%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 804
MRLTADVIL ARAS+N ERELDLRG+KIP+IEN+GVTQDQFD +D SDNEI+KLDNFPR RL++LLL NN ++RI D+G +LPNLSC++LTNN +S L +L+ L C++LTMLSLL N V Q+YRLY I+ +PSLK LDF KV + A A RL +S AG+ M +D+A + AKTF PGGA LT R I +A T EEI+ L + ++AGI P+
Sbjct: 1 MRLTADVILRARASLNALRERELDLRGHKIPIIENIGVTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKEERAR-AERLFQSAAGRAMEEDIALQ---AKTFVPGGAARAP--LTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPA 225
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK) HSP 1 Score: 226 bits (575), Expect = 3.090e-65 Identity = 126/236 (53.39%), Postives = 167/236 (70.76%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQK-LTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSATYK 816
MRLTADVIL A A+INPC ERELDLRGYKIP+IEN+G TQD FD +D SDNEIKKL+NFPR +RL++LL NNH+S+IA + +Q+PNLS + ++ L +L+ L +KLT+LSLL N VV +Q+YRLY I+ P+LK LDF+KV + E AARL +S+AGQ M DV KE KTF G E+K LT++ + + E I ATT EE++ L ++++AGI+P+ K
Sbjct: 1 MRLTADVILRADATINPCKERELDLRGYKIPVIENVGATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQERQE-AARLFKSKAGQQMQDDVQKE---IKTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQK 232
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA) HSP 1 Score: 211 bits (536), Expect = 4.880e-61 Identity = 127/251 (50.60%), Postives = 166/251 (66.14%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPG----GATAGEQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSATYKQGGGAAVANGAA 852
+RLTADV HA +N C ERELDLRG KIP IEN+GVTQDQFD +D +DNEIK++DNFP +KRLS+LLL NNHV+R++ L QLPNL C+ L +++ L C KLTMLS ++N ++ +Q+YRLY I +P LK LDF KV E AA+L RS AG++M +DV EAE +KTFTPG T LT E + IA A+T EE++ + ++++AG+IP T K+ AA A GAA
Sbjct: 2 VRLTADVFAHAVPRMNCCQERELDLRGLKIPAIENVGVTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKVKA-IEREEAAKLFRSAAGRLMQQDV--EAE-SKTFTPGEDIPSTTNPMANLTAEQKDQVRAVIAAASTPEEVDRIERQLKAGVIP--TLKKA--AAPAGGAA 244
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A7S2F7F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7F7_9STRA) HSP 1 Score: 211 bits (536), Expect = 2.070e-59 Identity = 115/231 (49.78%), Postives = 159/231 (68.83%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIPS 804
MRLT+DV+L+A A +NPC ERELDLRG KIP IEN+GVTQD +D +D +DNEIKKL+NFP KRLS LLL NNHV I ++ ++P+L ++LTNNK++ L +++ L+ C LT LSLL N V+ +Q+YR Y I+ +P LK LDF K+ K E A RL RS AG++M +DV K E +T AT +L + RA IA A+T +EI+ + ++++AGI+P+
Sbjct: 1 MRLTSDVLLNAHARLNPCSERELDLRGLKIPAIENIGVTQDLYDTLDFTDNEIKKLENFPNTKRLSCLLLSNNHVKIINPEISEKIPSLRTLVLTNNKITNLSEVDNLAACANLTELSLLSNPVIRRQHYRFYVISKLPQLKVLDFSKIKPKERQE-AERLFRSAAGKLMQEDVLKSKE-IETDEAETATHNMAQLNEVDRAQVRAAIAAASTPQEIDRIERQLKAGILPT 229
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A673KC14_9TELE (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673KC14_9TELE) HSP 1 Score: 205 bits (521), Expect = 4.000e-59 Identity = 117/239 (48.95%), Postives = 157/239 (65.69%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRAIYAER--IAKATTVEEIEMLSKKIQAGIIPSATYKQG 822
++LTA++I A NP +RELDLRGYKIP++ENLG T DQFD +DLSDNEI+KLD FP KRL +LLL NN + R +L LPNL +ILT+N + LGDL+ L+T K LT+LSLL N V NK++YRLY IN +P ++ LDFQKV +K E A ++ + + G + KD+AK+ KTFTPG A E+K + A + IA AT++ E+E L +Q+G IP + G
Sbjct: 2 VKLTAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTIDLSDNEIRKLDGFPLLKRLKTLLLNNNRICRFGENLEQSLPNLKELILTSNNIQELGDLDPLATVKSLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQE-AEKMFKGKRGAQLAKDIAKQ---TKTFTPGAALQTEKKTGPSAADVEAIKNAIANATSLAEVERLKGLLQSGQIPGRELRSG 236
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: D6X367_TRICA (Putative U2 small nuclear ribonucleoprotein A'-like Protein n=2 Tax=Tribolium TaxID=7069 RepID=D6X367_TRICA) HSP 1 Score: 204 bits (519), Expect = 4.990e-59 Identity = 116/233 (49.79%), Postives = 157/233 (67.38%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGG---ATAGEQKLTDEHRAIYAERIAKATTVEEIEMLSKKIQAGIIP 801
++LTA++I ++ INP +RELDLRGY+IP +ENLG T DQFD +D SDN+++KLD FP KRL LL NN + RI L +PNL +ILT N L LGD+E L T +KLT +SLLHN + +KQ+YRLY I +P L+ LDF+KVT K E+ A L +S+ G+ + K++ K +AKTF PGG + A + LTDE A E I KA+++EE+E L K +Q+G IP
Sbjct: 2 VKLTAELIQNSMQYINPVKDRELDLRGYRIPEVENLGATGDQFDTIDFSDNDVRKLDGFPYLKRLKCLLFNNNRIVRIGEHLEEYIPNLETLILTGNHLEELGDIEPLCTLEKLTTVSLLHNPITSKQHYRLYLIYKLPQLRLLDFRKVTAKEREEARA-LFKSKKGKEIRKEIGK---RAKTFIPGGTGNSIAKSKGLTDEEIAKIREAINKASSLEEVERLQKILQSGQIP 230
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: UPI0009A437FD (U2 small nuclear ribonucleoprotein A' n=5 Tax=Elasmobranchii TaxID=7778 RepID=UPI0009A437FD) HSP 1 Score: 204 bits (519), Expect = 6.580e-59 Identity = 122/241 (50.62%), Postives = 156/241 (64.73%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTD----EHRAIYAERIAKATTVEEIEMLSKKIQAGIIPSATYKQG 822
++LTA++I A NP +RELDLRGYKIP++ENLG T DQFD +D SDNEI+KLD FP +RL SLLL NN + RI L LPNL ++LTNN L LGDL+ LST K LT LS+L N V +K++YRLY I+ VP ++ LDFQKV +K E A R+ + + G + K++ K K KTFTPG +GE+K T E AI IA A+T+ E+E L +QAG IP K G
Sbjct: 2 VKLTAELIELAAQYTNPVRDRELDLRGYKIPVVENLGATLDQFDCIDFSDNEIRKLDGFPLLRRLKSLLLNNNRICRIGEGLEQALPNLRELVLTNNNLQELGDLDTLSTIKSLTFLSILRNPVTSKKHYRLYVIHKVPQVRVLDFQKVKLKERQE-ADRMFKGKRGAQLAKEITK---KTKTFTPGAGLSGEKKKTGPSAPEVEAI-KNAIANASTLAEVEKLKGMLQAGQIPGRDRKSG 237
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A6P7M0X6_BETSP (U2 small nuclear ribonucleoprotein A' n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7M0X6_BETSP) HSP 1 Score: 204 bits (520), Expect = 1.120e-58 Identity = 114/239 (47.70%), Postives = 159/239 (66.53%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRAIYAER--IAKATTVEEIEMLSKKIQAGIIPSATYKQG 822
++L+A++I A NP +RELDLRGYKIP++ENLG T DQFD +DLSDNE++KLD FP KRL +LL+ NN + RI +L LPNL ++LTNN + LGDL+ L++ K LT+LSLL N V NK++YRLY IN +P ++ LDFQKV +K E A ++ + + G + KD+AK + KTFTPG A +++ + A + IA A+++ E+E L +QAG IP KQG
Sbjct: 2 VKLSAELIEQAAQYTNPIRDRELDLRGYKIPVLENLGATLDQFDTVDLSDNEVRKLDGFPLLKRLKTLLMNNNRICRIGENLERSLPNLRELVLTNNSIQELGDLDTLASVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQE-AEKMFKGKRGAQLAKDIAK---RTKTFTPGAAAQIDKRTGPSQAEVEAIKNAIASASSLAEVERLKGMLQAGQIPGRNLKQG 236
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Match: A0A3Q1EK11_9TELE (Small nuclear ribonucleoprotein polypeptide A' n=6 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A3Q1EK11_9TELE) HSP 1 Score: 202 bits (515), Expect = 1.520e-58 Identity = 114/240 (47.50%), Postives = 159/240 (66.25%), Query Frame = 1
Query: 112 MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIAADLGNQLPNLSCIILTNNKLSTLGDLEGLSTCKKLTMLSLLHNEVVNKQYYRLYTINLVPSLKQLDFQKVTVKASAESAARLARSQAGQVMMKDVAKEAEKAKTFTPGGATAGEQKLTDEHRA---IYAERIAKATTVEEIEMLSKKIQAGIIPSATYKQG 822
++L+A++I A NP +RELDLRGYKIP++ENLG T DQFD +D SDNEI+KLD FP +RL +LL+ NN + RI +L LP+L+ ++LTNN + LGDL+ L+T K LT+LSLL N V NK++YRLY IN +P ++ LDFQKV +K E A ++ + + G + KD+A+ + KTFTPG A E+K T +A IA A+++ E+E L +QAG IP +QG
Sbjct: 2 VKLSAELIEQAAQYTNPVRDRELDLRGYKIPVLENLGATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLKERQE-AEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIPGRDLRQG 237 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.559.1 >prot_D-herbacea_F_contig105.559.1 ID=prot_D-herbacea_F_contig105.559.1|Name=mRNA_D-herbacea_F_contig105.559.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=462bp MRLTADVILHARASINPCDERELDLRGYKIPMIENLGVTQDQFDAMDLSDback to top mRNA from alignment at D-herbacea_F_contig105:759411..768397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.559.1 ID=mRNA_D-herbacea_F_contig105.559.1|Name=mRNA_D-herbacea_F_contig105.559.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=8987bp|location=Sequence derived from alignment at D-herbacea_F_contig105:759411..768397+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:759411..768397+ >mRNA_D-herbacea_F_contig105.559.1 ID=mRNA_D-herbacea_F_contig105.559.1|Name=mRNA_D-herbacea_F_contig105.559.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=2772bp|location=Sequence derived from alignment at D-herbacea_F_contig105:759411..768397+ (Desmarestia herbacea DmunF female)back to top |