mRNA_D-herbacea_F_contig105.549.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.549.1
Unique NamemRNA_D-herbacea_F_contig105.549.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A6H5L0R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R0_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.660e-36
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 QMMKEGIPLTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFYSRG-NTNVPLQ-PVTNRV 285
            QMM EGIPLTRCFPDY P  G DAS+VHQA+ EI RRF +V+HRHSPRK++++HVIASRVRLEMKSAF+DVKDRIK++YS+G + N  LQ  V+NR+
Sbjct:  272 QMMTEGIPLTRCFPDYRPGAGCDASDVHQAVAEIERRFLDVIHRHSPRKNIHVHVIASRVRLEMKSAFSDVKDRIKEYYSQGQHANGSLQRQVSNRL 368
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: D8LSD7_ECTSI (GPA6, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD7_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 8.640e-32
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 QMMKEGIPLTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFYSRGNTNVPLQPVTNRV*SFPRRVSIAPSSLSQSS 339
            QMM EGIPL+RCFPDY P  G+DAS+VHQA+ EI RRF +V+HRH+PRK++++HVIASRVRLEMKSAF+DVKDRIK    R ++NV +      V  +PR++     ++  S+
Sbjct:  204 QMMTEGIPLSRCFPDYRPGAGSDASDVHQAVAEIERRFLDVIHRHNPRKNIHVHVIASRVRLEMKSAFSDVKDRIKVRRKR-SSNVCMY-----VCMYPRKILSCTCTMENSN 310
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.100e-7
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   34 CFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFY 237
            CFP+Y    G    E   A++ I +++K++M ++ P K + IHV+A+RVR++MK AF +VK++IK  Y
Sbjct:  177 CFPEYDGPEG----EARPALEFIEKKYKDIMDKYCPGKGVIIHVVAARVRMDMKIAFGEVKEQIKSIY 240
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A6S9GGW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GGW2_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 4.670e-7
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   25 LTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFY 237
            L +CFP+Y    G D  E+  A++ I  ++K VM +H P K + + VIA+RVR++MK AF +VKD +++F+
Sbjct:  282 LKKCFPEYD---GPDG-EMQPALEFIEGKYKTVMEQHCPGKEVSLFVIAARVRMDMKMAFGEVKDMVRNFH 348
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.700e-7
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   34 CFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFYS 240
            CFP Y    G D  EV  A++ I +++ EVM ++ P K + +HV+A+RVR++MK AF +VK++IK  Y+
Sbjct:  283 CFPAYD---GPDG-EVRPALEYIEKKYTEVMDKYCPGKGVNVHVVAARVRMDMKIAFGEVKEQIKAIYA 347
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 8.770e-7
Identity = 27/81 (33.33%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:    1 QMMKEGIPLTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIKDFYSR 243
            + M +  PL+ CFP++        ++VH A++ +   + +++    P K L+ HV+A+RVR++MK A+ DVK+++K   SR
Sbjct:  274 ETMVKNTPLSVCFPEFP----GPENDVHAALEYVQAEYSKILEEAVPGKELHAHVVAARVRMDMKVAWGDVKEQLKRMNSR 350
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BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.200e-6
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   25 LTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIK 228
            L  CFP+Y    G D  +VH A+  +   FK VM+   P KH++  V+A+RVR++MK A+++VKD +K
Sbjct:  275 LRACFPEYS---GPDG-DVHAALQFVEGAFKAVMNEACPGKHVHTQVVAARVRMDMKIAWSEVKDTLK 338
[Close]
BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Match: A0A6H5L6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V2_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.540e-5
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   25 LTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHLYIHVIASRVRLEMKSAFTDVKDRIK 228
            L +CFP+Y    G D  E   A+  I +++K+ M    P K + +HVIA+RVR++MK AF +VKD I+
Sbjct:   41 LKKCFPEYD---GPDG-EAMPALRFIEQKYKQAMLSKVPGKDVTVHVIAARVRMDMKIAFGEVKDEIR 104
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L0R0_9PHAE6.660e-3670.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSD7_ECTSI8.640e-3256.64GPA6, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YXT9_9STRA3.100e-741.18P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6S9GGW2_HETAK4.670e-742.25Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z6Q6_9STRA8.700e-743.48GPA5, alpha subunit of a heterotrimeric G protein ... [more]
D8LBA2_ECTSI8.770e-733.33GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YY90_9STRA4.200e-642.65GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A6H5L6V2_9PHAE4.540e-542.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:571716..573770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LSD7
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons3
Model size390
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.549.1prot_D-herbacea_F_contig105.549.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 571818..573767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927464.1046093-UTR-D-herbacea_F_contig105:571715..5718171622927464.1046093-UTR-D-herbacea_F_contig105:571715..571817Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 571716..571817 -
1690790184.883654-UTR-D-herbacea_F_contig105:571715..5718171690790184.883654-UTR-D-herbacea_F_contig105:571715..571817Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 571716..571817 -
1622927464.1588812-UTR-D-herbacea_F_contig105:573767..5737701622927464.1588812-UTR-D-herbacea_F_contig105:573767..573770Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 573768..573770 -
1690790184.9149408-UTR-D-herbacea_F_contig105:573767..5737701690790184.9149408-UTR-D-herbacea_F_contig105:573767..573770Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 573768..573770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927464.1140065-CDS-D-herbacea_F_contig105:571817..5718771622927464.1140065-CDS-D-herbacea_F_contig105:571817..571877Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 571818..571877 -
1690790184.8932364-CDS-D-herbacea_F_contig105:571817..5718771690790184.8932364-CDS-D-herbacea_F_contig105:571817..571877Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 571818..571877 -
1622927464.1244266-CDS-D-herbacea_F_contig105:572495..5726721622927464.1244266-CDS-D-herbacea_F_contig105:572495..572672Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 572496..572672 -
1690790184.900459-CDS-D-herbacea_F_contig105:572495..5726721690790184.900459-CDS-D-herbacea_F_contig105:572495..572672Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 572496..572672 -
1622927464.144127-CDS-D-herbacea_F_contig105:573719..5737671622927464.144127-CDS-D-herbacea_F_contig105:573719..573767Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 573720..573767 -
1690790184.9077194-CDS-D-herbacea_F_contig105:573719..5737671690790184.9077194-CDS-D-herbacea_F_contig105:573719..573767Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 573720..573767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.549.1

>prot_D-herbacea_F_contig105.549.1 ID=prot_D-herbacea_F_contig105.549.1|Name=mRNA_D-herbacea_F_contig105.549.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=95bp
MMKEGIPLTRCFPDYMPTLGADASEVHQAIDEIARRFKEVMHRHSPRKHL
YIHVIASRVRLEMKSAFTDVKDRIKDFYSRGNTNVPLQPVTNRV*
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mRNA from alignment at D-herbacea_F_contig105:571716..573770-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.549.1 ID=mRNA_D-herbacea_F_contig105.549.1|Name=mRNA_D-herbacea_F_contig105.549.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=2055bp|location=Sequence derived from alignment at D-herbacea_F_contig105:571716..573770- (Desmarestia herbacea DmunF female)
CAGATGATGAAGGAGGGCATACCGCTCACAAGATGCTTTCCTGACTACAT
GGTGAGTTGTCCCGTCACTAACGCCAATCGTTAGGATATGCCTTACTGTA
CGTGTCAACTCAAAAAAGTTGTCTGTCTTTTAACTGATTCATTGCAAGTC
GATGAAAGTGGACGAGGGAAGAAGGTGCTTCGCTCTTCTCGCGATAAAAA
TGTAGGTACGTACCGTACTTGTATTGCAGTGGGAAGGCGGGAGGGAGCGC
CTACTATGTGACCCCGGCTCTGAGTTACGAAGAGAGATGGAACTAGAGAA
GGAATAGAGCGAAGATAATAAATGGGACAGAAAAAAAAGAAAAAAAAACT
ATTTTCCAAGGCGCACACAGGGTTGGAAAGGGTAGTACTCTTTCTCCAGC
TCAATATAGAGTTTCGGATTCAAGCGAAGAATCTGATACTGTGAGCAGGA
ACAAACGCTCTCACACTCGGGAAGTCATTTCGCTCATCTGAACTGAAAGT
CTCTCAACTTTTGCCCCATTTTGGGGACCATTCCCAGGACCGGAGAGCCC
GTAATCTGATAATTCAAGGAATCTGAAAGCAAAAAATTGAATCCGAAACT
CTCTAATATCGCTTGCAACTCAGATCCGGGATCATGTAGCAGGCACTCCT
CGCCCCCTCCTCGCTACGAGAACGGTACCATACGTGCCTATATTTTTAAA
TATATCGTCTCCTAAAGAAAACAATTATATATTACCACGTATAAACGACA
TTTCCTATCAATCAAAAAACAATACGCAATACATACAAATACTATTGAAA
TATATTATACGTAGCTATTACTATTTGTACTACTTTTTACATCCCAATCA
CGATGCTTCCGATTTACAACATATTATTAGCGCTGTAGTAATCCGTATTA
TTTTTTTATTTCCTTCTTTTTTTATACCAGTGTTAGTGTGTTAGCCCGTG
CATGTAATGAGCCCCCAGAGACCTGTATCAGTCCCCCCCCGCCAACTTTT
ATTTTATTTTATTTTATTTATTTCGTCTATTTTTTGGTGTTTCCGGTCTG
CCTTGTTAAACATGCGTGCGTGGCTTGTGATTTTTTATGTCGTTGCAGCC
CACGCTGGGCGCAGATGCATCGGAGGTTCACCAGGCGATAGACGAGATCG
CAAGAAGATTCAAGGAGGTTATGCACAGGCACAGCCCCAGGAAGCACCTC
TACATACACGTGATTGCGTCGCGGGTTAGGTTGGAAATGAAGAGTGCGTT
TACGGATGTCAAGGATAGAATCAAGGTACGATGTATGTGTATGGCTTATG
CTTTAGCGTAGTAGATAGTCGGAGGTTGTTGTTTTTTTTTTTTTTTTTTT
TGCTTTTTGTCCTTTCACTTGTTTTTAGTTTTCCAGTCGAGCTCAATTGG
CTAGGCACGCTTGTGCGGGCGAGCCGTGTTCATAGGTGCCTTCTCCCGCC
TCCCGCCTCCCGCCTCCCCTGCCTGGTCGGTGAAAACCTGACGTGCTCCG
CCCCGGCAATATTTTTGCGAGGGTCTATGGTCACACGACTACGGCCATGC
ATGAAATAAGTACACCCCCCCCCCCCCTGCCCTGCCCCCCTGGTGCGTGC
CTTAAGTTGTTACCGCGCACACAAGTGTTCATTATTCCCTATGAGCTCGT
CGACTGTCATTGAATTTTGCTCACTCGTGCGCTTTCCGCGACAGACGACA
CAGGAAGTCACTGAAAAAAAAGTGCCATTTTGTTTGACCGGGATTTGAAC
CCGCCATCGTTGCCCCTTTTCGCCTACTTGTCAACCCCGTGTTGAGATAT
TATACACACAATGCATACCCCCCCTCCTCGCCCCCTCCCCTACCCTCACG
CGCGTGACCCCCCCCCACACACACACACACACACACACGACAGGATTTCT
ACTCTCGGGGTAACACGAACGTGCCATTGCAACCGGTTACGAATCGTGTT
TAGTCCTTCCCCCGGCGGGTTAGTATTGCTCCCAGCTCCCTGTCCCAGTC
GTCGGAGAACGACCGTGTGTGTGTGCGTGCATGGCGGGGGCGCGCGCGCG
GGGGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:571716..573770-

>mRNA_D-herbacea_F_contig105.549.1 ID=mRNA_D-herbacea_F_contig105.549.1|Name=mRNA_D-herbacea_F_contig105.549.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=570bp|location=Sequence derived from alignment at D-herbacea_F_contig105:571716..573770- (Desmarestia herbacea DmunF female)
ATGATGAAGGAGGGCATACCGCTCACAAGATGCTTTCCTGACTACATGAT
GATGAAGGAGGGCATACCGCTCACAAGATGCTTTCCTGACTACATGCCCA
CGCTGGGCGCAGATGCATCGGAGGTTCACCAGGCGATAGACGAGATCGCA
AGAAGATTCAAGGAGGTTATGCACAGGCACAGCCCCAGGAAGCACCTCTA
CATACACGTGATTGCGTCGCGGGTTAGGTTGGAAATGAAGAGTGCGTTTA
CGGATGTCAAGGATAGAATCAAGCCCACGCTGGGCGCAGATGCATCGGAG
GTTCACCAGGCGATAGACGAGATCGCAAGAAGATTCAAGGAGGTTATGCA
CAGGCACAGCCCCAGGAAGCACCTCTACATACACGTGATTGCGTCGCGGG
TTAGGTTGGAAATGAAGAGTGCGTTTACGGATGTCAAGGATAGAATCAAG
GATTTCTACTCTCGGGGTAACACGAACGTGCCATTGCAACCGGTTACGAA
TCGTGTTTAGGATTTCTACTCTCGGGGTAACACGAACGTGCCATTGCAAC
CGGTTACGAATCGTGTTTAG
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