mRNA_D-herbacea_F_contig105.537.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.537.1
Unique NamemRNA_D-herbacea_F_contig105.537.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:314972..316461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size577
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927459.7722993-CDS-D-herbacea_F_contig105:314973..3150261622927459.7722993-CDS-D-herbacea_F_contig105:314973..315026Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314974..315026 -
1690790182.0170205-CDS-D-herbacea_F_contig105:314973..3150261690790182.0170205-CDS-D-herbacea_F_contig105:314973..315026Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 314974..315026 -
1622927459.8744087-CDS-D-herbacea_F_contig105:315941..3164611622927459.8744087-CDS-D-herbacea_F_contig105:315941..316461Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 315942..316461 -
1690790182.0273838-CDS-D-herbacea_F_contig105:315941..3164611690790182.0273838-CDS-D-herbacea_F_contig105:315941..316461Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 315942..316461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.537.1prot_D-herbacea_F_contig105.537.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 314974..316461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.537.1

>prot_D-herbacea_F_contig105.537.1 ID=prot_D-herbacea_F_contig105.537.1|Name=mRNA_D-herbacea_F_contig105.537.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=191bp
YVYQTCILRARVVSFCHSDVGNVMTASPPTPGTFFLSPPLFSLASSSFGG
GVVTSRKRPEGHHYEYDSYPFLLLRSRCNYDGLSSKAPPAAAVTYLRYPS
LHTGSYCSSNSRRCIRRKRGYLLRSCRREREGDQDQGWTSQHGRLRGLAG
RAMVLLQRLGGWPRASSAKGVVGWWRRRRHAEVRRRGNIGF
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mRNA from alignment at D-herbacea_F_contig105:314972..316461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.537.1 ID=mRNA_D-herbacea_F_contig105.537.1|Name=mRNA_D-herbacea_F_contig105.537.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=1490bp|location=Sequence derived from alignment at D-herbacea_F_contig105:314972..316461- (Desmarestia herbacea DmunF female)
TACGTCTACCAAACATGCATACTTCGCGCACGGGTTGTTTCTTTCTGCCA
CTCTGATGTTGGCAACGTCATGACTGCGTCTCCTCCTACACCTGGCACCT
TTTTTCTGTCCCCACCGCTGTTCTCGCTGGCGAGTTCGTCGTTCGGAGGG
GGTGTTGTTACTTCGCGAAAAAGGCCTGAAGGTCACCACTACGAGTACGA
CTCGTACCCCTTTTTACTGCTACGGAGTCGATGCAACTACGACGGTTTGT
CGTCTAAAGCACCGCCTGCTGCTGCTGTTACCTATCTTCGCTATCCGTCG
TTGCACACCGGCTCTTATTGTAGTAGTAATAGTAGAAGGTGTATTAGGAG
AAAGAGGGGTTATTTGCTCCGGTCTTGTCGGCGAGAAAGGGAGGGGGATC
AAGATCAAGGTTGGACGTCGCAGCATGGGAGACTGAGAGGACTCGCAGGC
CGCGCGATGGTCCTGCTACAGCGGCTGGGAGGGTGGCCACGGGCCTCCTC
CGCGAAAGGTGTCGTAGGATGTGAGATACAACAACATAGTATGATAGTAG
TCAGTACAACAGCAGCAGTAGTAGCAGTAAACTATGACTCTGCCGCGTAC
GTTTCGAAAGGGAGAAATGAACGTGTTCTGTCATCGCCGTTGCACTATTA
TAGTACTACTACTGTCTGTTATACAGCCGGTATAACACTGAACATGCTGT
GTTGTAGAGTACTCGTGCTCTCGTACTGCGCTGCTATCTCGAACTGCTAA
GTTCGCAGTTGACAATGAGGTGCTGGCAGTACCGCACCTCATTGCCTGCA
GCAGGCGGTGTGCGTTGCAGGTTGTCGACGAAATAAGTAAAGAAAATGGC
CGTGTCGTGTCAGAAAAAAAAAGACGATACCAGCAAGGTTCGAACTCAGA
CCAGAAAAGAAGTACGTACGATAGACAGTGAATATTGAATATTCGTACTC
GTACTCGTTTGGTTCGTAGAGCTCGTTTCTTGTGTTTGTTTGATTTATTC
CACGAAGCAAGCAAGGACACAGTCATTGCTATCGCGAGACAGAAGCTACG
AAAGGAACTGAAAGTTGGTCGTGCCTGAACACGAGCACGTCAGCGTTTAC
AGCAGACCCCGTCACAACTGTATCTGCTTGTGCGATGCAAGAAGAAAAAA
CGCAATGTTGATGCGTCGTGACTACTACTGTAGTGTAGTGTACGGTTGAA
CTAATGTGTTCACAGCTTATTTCTTACGGACCGCCGCCGTCAGTGACACC
TCGAGATAGAGACGACGAACGGAACTGGAAGTTGGCCACGGATTAAATGG
ACATGTCAGCTTTCAGATGCCGTCGTTGTAGCGGCCTGTGCTTGGTTTGA
CGAAAAGCTACATTATGGTGTTGAGAAGAGCGAAACGATCTTGATCCATG
CCTCGTGGTTGGGCCTCTTTGTTTTCCCCCGGCAGGGTGGCGACGACGGC
GACACGCAGAGGTAAGGCGACGCGGTAACATCGGCTTTGG
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:314972..316461-

>mRNA_D-herbacea_F_contig105.537.1 ID=mRNA_D-herbacea_F_contig105.537.1|Name=mRNA_D-herbacea_F_contig105.537.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1146bp|location=Sequence derived from alignment at D-herbacea_F_contig105:314972..316461- (Desmarestia herbacea DmunF female)
TACGTCTACCAAACATGCATACTTCGCGCACGGGTTGTTTCTTTCTGCCA
CTCTGATGTTGGCAACGTCATGACTGCGTCTCCTCCTACACCTGGCACCT
TTTTTCTGTCCCCACCGCTGTTCTCGCTGGCGAGTTCGTCGTTCGGAGGG
GGTGTTGTTACTTCGCGAAAAAGGCCTGAAGGTCACCACTACGAGTACGA
CTCGTACCCCTTTTTACTGCTACGGAGTCGATGCAACTACGACGGTTTGT
CGTCTAAAGCACCGCCTGCTGCTGCTGTTACCTATCTTCGCTATCCGTCG
TTGCACACCGGCTCTTATTGTAGTAGTAATAGTAGAAGGTGTATTAGGAG
AAAGAGGGGTTATTTGCTCCGGTCTTGTCGGCGAGAAAGGGAGGGGGATC
AAGATCAAGGTTGGACGTCGCAGCATGGGAGACTGAGAGGACTCGCAGGC
CGCGCGATGGTCCTGCTACAGCGGCTGGGAGGGTGGCCACGGGCCTCCTC
CGCGAAAGGTGTCGTAGGATTACGTCTACCAAACATGCATACTTCGCGCA
CGGGTTGTTTCTTTCTGCCACTCTGATGTTGGCAACGTCATGACTGCGTC
TCCTCCTACACCTGGCACCTTTTTTCTGTCCCCACCGCTGTTCTCGCTGG
CGAGTTCGTCGTTCGGAGGGGGTGTTGTTACTTCGCGAAAAAGGCCTGAA
GGTCACCACTACGAGTACGACTCGTACCCCTTTTTACTGCTACGGAGTCG
ATGCAACTACGACGGTTTGTCGTCTAAAGCACCGCCTGCTGCTGCTGTTA
CCTATCTTCGCTATCCGTCGTTGCACACCGGCTCTTATTGTAGTAGTAAT
AGTAGAAGGTGTATTAGGAGAAAGAGGGGTTATTTGCTCCGGTCTTGTCG
GCGAGAAAGGGAGGGGGATCAAGATCAAGGTTGGACGTCGCAGCATGGGA
GACTGAGAGGACTCGCAGGCCGCGCGATGGTCCTGCTACAGCGGCTGGGA
GGGTGGCCACGGGCCTCCTCCGCGAAAGGTGTCGTAGGATGGTGGCGACG
ACGGCGACACGCAGAGGTAAGGCGACGCGGTAACATCGGCTTTGGTGGCG
ACGACGGCGACACGCAGAGGTAAGGCGACGCGGTAACATCGGCTTT
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