mRNA_D-herbacea_F_contig105.534.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI) HSP 1 Score: 204 bits (518), Expect = 2.290e-66 Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRPKRD 318
MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAE RRNRDPPVRHRPKRD
Sbjct: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA) HSP 1 Score: 186 bits (472), Expect = 2.380e-59 Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRPKRD 318
MTVKRRNHGRNKKGRGHV RVRC STAKAIPKDKAIKRFIVRNIVDASSLRD+REASV+ NYALPKLYIKQYYCVEAAVHQRIVRSRSAE RRNR+PP R RPKR+
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCVSTAKAIPKDKAIKRFIVRNIVDASSLRDLREASVYANYALPKLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.260e-54 Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHR 306
MTVKRR+HGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASS+RDIREAS F+NYALPKLYIKQYY VEAAVHQRIVRSRS E RRNR+PP R R
Sbjct: 15 MTVKRRSHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIREASAFENYALPKLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.500e-54 Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVR 300
MTVKRRNHGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASS+RDIR+AS F+ YALPK+YIKQYYC+EAAVHQRIVRSRS E RRNR+PP R
Sbjct: 24 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAFEAYALPKIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPAR 123
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.020e-51 Identity = 84/103 (81.55%), Postives = 93/103 (90.29%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRP 309
MTVKRRNHGRNK GRGHV RVRC STAKAIPKDKAIKRF+VRNIVD+S+LRDI+E+S ++NY LPKLYIKQYYC+EAAVHQRIVR RSA R+NR PPVR RP
Sbjct: 1 MTVKRRNHGRNKHGRGHVKRVRCVSTAKAIPKDKAIKRFLVRNIVDSSALRDIKESSAYENYQLPKLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A7S3K046_9STRA (40S ribosomal protein S26 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K046_9STRA) HSP 1 Score: 164 bits (416), Expect = 7.270e-51 Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHR 306
M VKRR HGRNKKGRGHV+RVRC ST KAIPKDKAIKRF+VRNIVDASS+RDIR+AS +++YALPKLYIKQYYC+EAAVHQRIVR RS R+NR+PP+R R
Sbjct: 1 MAVKRRAHGRNKKGRGHVLRVRCVSTGKAIPKDKAIKRFVVRNIVDASSMRDIRDASAYESYALPKLYIKQYYCIEAAVHQRIVRLRSRTERKNREPPMRRR 102
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A7S0GMG9_9STRA (40S ribosomal protein S26 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMG9_9STRA) HSP 1 Score: 164 bits (416), Expect = 8.230e-51 Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVR 300
MTVKRRNHGRNKKGRGHV RVRCAST KAIPKDKAIKRFIVRNIVDASSLRDI+EAS +D+Y LPKLY+K YYCVEAAVHQRIVR RS E R+ R PP R
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYDDYTLPKLYLKMYYCVEAAVHQRIVRGRSREGRKIRTPPPR 100
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A485LRR7_9STRA (40S ribosomal protein S26 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRR7_9STRA) HSP 1 Score: 164 bits (415), Expect = 3.090e-50 Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRPK 312
MTVKRRNHGRNKK RGHV RV C STAK IPKDKAIKRF VRNIVDAS++RD++EASV++ YALPK+YIK YYC+EAA+HQRIVR RS E RRNR+PP R RPK
Sbjct: 32 MTVKRRNHGRNKKNRGHVKRVHCVSTAKLIPKDKAIKRFTVRNIVDASAMRDLKEASVYETYALPKIYIKNYYCIEAAIHQRIVRVRSVEGRRNREPPARIRPK 135
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A067D0A6_SAPPC (40S ribosomal protein S26 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0A6_SAPPC) HSP 1 Score: 163 bits (412), Expect = 3.350e-50 Identity = 79/105 (75.24%), Postives = 94/105 (89.52%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRPKR 315
MTVKRRNHGRNKKGRGHV RV C STAK IPKDKAIKRF+VRN+VDAS++RD++EASV+++YALPK+YIK YY +EAA+HQRIVR RS + R+NR+PP R RPKR
Sbjct: 1 MTVKRRNHGRNKKGRGHVKRVHCVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVDGRKNREPPARFRPKR 105
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Match: A0A6S9R5Y9_CHRCT (40S ribosomal protein S26 n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9R5Y9_CHRCT) HSP 1 Score: 163 bits (413), Expect = 6.050e-50 Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 1
Query: 1 MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAEMRRNRDPPVRHRP 309
MTVKRR HGRNKKGRGHV RVRC ST KAIPKDKAIKRFIVRNIV+AS+LRDIREAS +NY LPK+YIKQYY VEAA+HQR+VR RS E RRNR+PP R+RP
Sbjct: 14 MTVKRRAHGRNKKGRGHVNRVRCVSTGKAIPKDKAIKRFIVRNIVEASALRDIREASCIENYQLPKIYIKQYYSVEAAIHQRVVRVRSREARRNREPPQRNRP 116 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.534.1 >prot_D-herbacea_F_contig105.534.1 ID=prot_D-herbacea_F_contig105.534.1|Name=mRNA_D-herbacea_F_contig105.534.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=107bp MTVKRRNHGRNKKGRGHVVRVRCASTAKAIPKDKAIKRFIVRNIVDASSLback to top mRNA from alignment at D-herbacea_F_contig105:282716..288211- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.534.1 ID=mRNA_D-herbacea_F_contig105.534.1|Name=mRNA_D-herbacea_F_contig105.534.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=5496bp|location=Sequence derived from alignment at D-herbacea_F_contig105:282716..288211- (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:282716..288211- >mRNA_D-herbacea_F_contig105.534.1 ID=mRNA_D-herbacea_F_contig105.534.1|Name=mRNA_D-herbacea_F_contig105.534.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=642bp|location=Sequence derived from alignment at D-herbacea_F_contig105:282716..288211- (Desmarestia herbacea DmunF female)back to top |