mRNA_D-herbacea_F_contig105.530.1 (mRNA) Desmarestia herbacea DmunF female
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Overview
Homology
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI) HSP 1 Score: 363 bits (933), Expect = 7.930e-119 Identity = 205/396 (51.77%), Postives = 242/396 (61.11%), Query Frame = 1
Query: 1 ATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILS---QGEXXXXXXXXXXXXXGLHVAGSLEEDPATXXXXXXXEARVTVATGEKLVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGEAVRWQEEEVDWGSYLSWEEVETKVSEGVWEFVPDGLQVWRHYLEWQAS 1179
AT PP LV G+ DFETFFGAYR+RP+R+SES DA+ Q VL+L +GE ++ G+ A + VL++ED+ G+ +GF GA+ S ++ TL +TY+C + GREVD TT LL RALHGWL GP AA +GE+VDWVDT GRVICALPR VVH+NNVLHRGAGVMIR+ G VYCHRRTSTKRVFPSMYDMFIGGVSG+MEP LTTALRELGEELGLGP G G +RGECLVQT NRC VSVFDYRV GE V+WQE+EV+WGSY+ WEEV +KVSEG WEFVPDGLQVW+HYL+W+A+
Sbjct: 12 ATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAH-----------------AGADNRVLIVEDLEADGD----VLGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPANEEE--------EGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGSSPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 370
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA) HSP 1 Score: 142 bits (359), Expect = 3.280e-33 Identity = 85/226 (37.61%), Postives = 120/226 (53.10%), Query Frame = 1
Query: 619 QGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRN----------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVET-------KVSEG------------------------VWEFVPDGLQVWRHYLEW 1170
+ E+V+ VD+ G + +PR +VH N+LHRG G+++ L VY H+RTSTKR+FPS+YDMF+GGVS + E ++ TA RE+ EELGL D L P+ + C++ T NRC+V+VF YR A+ E ++WQEEEV WG Y+S+ +E ++ EG W+FVPDGL VW + EW
Sbjct: 301 KSELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL------------QRGLDGALSEPLFK--CVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.810e-32 Identity = 87/204 (42.65%), Postives = 116/204 (56.86%), Query Frame = 1
Query: 625 EMVDWVDTEGRVIC-----ALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG--EAVRWQEEEVDWGSYLSWEEVETKV----SEGVWEFVPDGLQVWRHYLEWQASAAEDSGLA 1203
E V WV+ G + LPR ++H NVLH+GAG+++R+ V+ H+R++ KR+FPS+YDMF+GGVS ME + TTA REL EELG GP A++ + D V LV+T NRC V V++Y VA G E+ EEV WG ++ EEV +V G W FVPDGL VW +L A D+G A
Sbjct: 186 ERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSRVFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGPAAC----AAQEESTDFRFLFDV-----LVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFLR-----ATDAGSA 375
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT) HSP 1 Score: 128 bits (321), Expect = 4.920e-31 Identity = 79/185 (42.70%), Postives = 104/185 (56.22%), Query Frame = 1
Query: 625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGL-GPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGEAVRWQEEEVDWGSYLSWEEVETKVSEGVWEFVPDGLQVWRHYLEWQA 1176
E+VD +D + RV+ R + N+LHRG G++ + G +Y HRRT TK VFP MYDMF+GGV G E A RE+ EELG+ GP E P+ R L NR +V+V Y+V +R Q EEV+WGSY+S EE+E K+ E W FVPDGL++W H E +A
Sbjct: 10 ELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLDPDGRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGIEGPQPE-----------------PICR--YLYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKIGE--WNFVPDGLEIWNHIRELKA 171
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC) HSP 1 Score: 133 bits (335), Expect = 1.760e-30 Identity = 90/239 (37.66%), Postives = 121/239 (50.63%), Query Frame = 1
Query: 625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRN-----------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELG----LGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG-EAVRWQEEEVDWGSYLSWEEVETK--------VSEGVW-------------------------------EFVPDGL---QVWRHYLE 1167
E+VD V ++G+V+ ++PR++VH N+LHRG G++I L VYCH+RT TKRVFPS+YDMF+GGVS S E S TA RE+ EELG L + EG D S +S +C + T NRCVVS F Y E++ WQEEEV WG ++ ++ VE V++G W ++VPDGL Q W+ YLE
Sbjct: 197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLPQVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGMKRALNLMEEGLDDESPLSQ---------ELFQCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQAWKKYLE 426
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA) HSP 1 Score: 132 bits (333), Expect = 3.610e-30 Identity = 87/235 (37.02%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 625 EMVDWVDTEG-RVICALPRSVVHANNVLHRGAGVMI---RNHLGH----VYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGP-LGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGE--AVRWQEEEVDWGSYLSWEEVET-------KVSEG--------------------------------VWEFVPDGLQVWRHYLEWQAS 1179
E V+ VD G ++ LPR +VH N+LHRG GV++ +H H VY HRRT TKR+FPS+YDMF+GGVS + E S TA RE+ EE+GL L + +G + + + T +C++ T NRCVV+VF Y E E +++WQEEEV WG ++ ++ VE ++ EG W++VPDGL VW +L W+ S
Sbjct: 200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSDHDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGLSKGLQQQLEGGNDDAIDEKTQILSNELFKCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVPYDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWKKS 434
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA) HSP 1 Score: 125 bits (315), Expect = 3.140e-29 Identity = 86/236 (36.44%), Postives = 114/236 (48.31%), Query Frame = 1
Query: 625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI---RN--------------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHR-GECLVQTDSNRCVVSVFDYRVA-EGEAVRWQEEEVDWGSYLSWEEVETKVSEGV----------------------------------WEFVPDGLQVWRHYLEWQ 1173
E+V+ VD G + +PR +VH N+LHRG GVM+ RN + VY HRRT KRVFPS+YDMF+GGVSG+ EP TA REL EELGL + R + D T Q C V T NRCVVS+F Y + + + + WQEEEV WG+++ + V+ + W+FVPDGL VW + +W+
Sbjct: 8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRV-------LRTTNGDDTHQQLSEMLFRCTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR 236
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA) HSP 1 Score: 128 bits (321), Expect = 2.290e-28 Identity = 85/235 (36.17%), Postives = 114/235 (48.51%), Query Frame = 1
Query: 625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI---RN--------------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG-EAVRWQEEEVDWGSYLSWEEVETKVSEGV----------------------------------WEFVPDGLQVWRHYLEWQ 1173
E+V+ VD G + +PR +VH N+LHRG GVM+ RN + VY HRRT KRVFPS+YDMF+GGVSG+ EP TA REL EELGL + G G+ + T Q C V T NRCVVS+F Y + + + WQ+EEV WG+++ + V+ + W+FVPDGL VW + +W+
Sbjct: 217 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRVLRDGSGSDD----EKTPQLSEMLFRCTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR 447
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A1Z5JA98_FISSO (Nudix hydrolase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA98_FISSO) HSP 1 Score: 127 bits (319), Expect = 2.820e-28 Identity = 81/230 (35.22%), Postives = 113/230 (49.13%), Query Frame = 1
Query: 622 GEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIR-------NHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVETKVSEGV-----------------------------------------WEFVPDGLQVWRHYL 1164
GEMV+ VD G V+ +PR +VH +N+LHRG G+ + N +Y HRRT TKR+FPS+YDMF+GGVS + E + TA RE+ EELGL S D P +C+V T NRCVV +F Y + + E+++WQ+EEV WGS++ ++ +E + W+FVPDGL VW +L
Sbjct: 214 GEMVEMVDRTGAVLGHVPRKLVHQHNILHRGIGIFVTKDDPMEGNQRPDLYTHRRTETKRIFPSLYDMFVGGVSLAGEDAFITAQREVEEELGL-------------SCRDHLR--PERLLQCVVCTAYNRCVVDLFVYLMNTKEESIKWQDEEVAWGSFVPYKTIEAAADRSIHRLAERGEWPGRYPPIQSSRMGKLDPEDETIRFEGAMEWTSWDFVPDGLLVWEAWL 428
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: B7FXH4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXH4_PHATC) HSP 1 Score: 124 bits (312), Expect = 3.030e-27 Identity = 85/239 (35.56%), Postives = 117/239 (48.95%), Query Frame = 1
Query: 625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI-------------RN------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVETKVSEGV-------------------------------------WEFVPDGLQVWRHYLEW 1170
E+V+ +D +G+++ +PR++VH N+LHRG GV I RN H +YCHRRTSTKR+FP +YDMF+GGV+ + E S TALRE+GEELGL G GD +A L C+V T NRCVV ++ Y + E V WQ EEV WG ++ + V+ V + W++VPDGL VW +L +
Sbjct: 225 EIVEMMDRDGKILGKVPRNLVHEYNLLHRGVGVFITRDVPLQLPIHGARNSSPSPTHQPDLYCHRRTSTKRIFPDLYDMFVGGVALAGEDSRRTALREVGEELGLAQ-GNIGD--------EAILT-------CVVCTGYNRCVVDLYCYVMNTMAERVSWQAEEVAWGDFVPFNAVQASVDLSIQRLVSDGSWPGRYPPIQSSYNGVFPKDEFSSIRNWDSWDYVPDGLLVWEAWLRY 447 The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-herbacea_F_contig105.530.1 >prot_D-herbacea_F_contig105.530.1 ID=prot_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=213bp MERAVQEEDKQEEEQGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMback to top mRNA from alignment at D-herbacea_F_contig105:221153..225477+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-herbacea_F_contig105.530.1 ID=mRNA_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4325bp|location=Sequence derived from alignment at D-herbacea_F_contig105:221153..225477+ (Desmarestia herbacea DmunF female)back to top Coding sequence (CDS) from alignment at D-herbacea_F_contig105:221153..225477+ >mRNA_D-herbacea_F_contig105.530.1 ID=mRNA_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1278bp|location=Sequence derived from alignment at D-herbacea_F_contig105:221153..225477+ (Desmarestia herbacea DmunF female)back to top |