mRNA_D-herbacea_F_contig105.530.1 (mRNA) Desmarestia herbacea DmunF female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-herbacea_F_contig105.530.1
Unique NamemRNA_D-herbacea_F_contig105.530.1
TypemRNA
OrganismDesmarestia herbacea DmunF female (Desmarestia herbacea DmunF female)
Homology
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 7.930e-119
Identity = 205/396 (51.77%), Postives = 242/396 (61.11%), Query Frame = 1
Query:    1 ATAAGKPPRLVQGSRDFETFFGAYRVRPKRKSESFADANGQCVLILS---QGEXXXXXXXXXXXXXGLHVAGSLEEDPATXXXXXXXEARVTVATGEKLVLVIEDIAGGGEGSYRYVGFCGAVAPQGLVSSSSSSNASTLPNTYVCSQLGREVDATTTGLLVRALHGWLGGPDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGEAVRWQEEEVDWGSYLSWEEVETKVSEGVWEFVPDGLQVWRHYLEWQAS 1179
            AT    PP LV G+ DFETFFGAYR+RP+R+SES  DA+ Q VL+L    +GE              ++  G+                    A  +  VL++ED+   G+     +GF GA+        S ++   TL +TY+C + GREVD  TT LL RALHGWL GP AA                                  +GE+VDWVDT GRVICALPR VVH+NNVLHRGAGVMIR+  G VYCHRRTSTKRVFPSMYDMFIGGVSG+MEP LTTALRELGEELGLGP G  G                 +RGECLVQT  NRC VSVFDYRV  GE V+WQE+EV+WGSY+ WEEV +KVSEG WEFVPDGLQVW+HYL+W+A+
Sbjct:   12 ATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAH-----------------AGADNRVLIVEDLEADGD----VLGFFGAL-------DSPTATGPTL-DTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPANEEE--------EGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGSSPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 370          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.280e-33
Identity = 85/226 (37.61%), Postives = 120/226 (53.10%), Query Frame = 1
Query:  619 QGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRN----------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVET-------KVSEG------------------------VWEFVPDGLQVWRHYLEW 1170
            + E+V+ VD+ G  +  +PR +VH  N+LHRG G+++             L  VY H+RTSTKR+FPS+YDMF+GGVS + E ++ TA RE+ EELGL                D  L  P+ +  C++ T  NRC+V+VF YR  A+ E ++WQEEEV WG Y+S+  +E        ++ EG                         W+FVPDGL VW  + EW
Sbjct:  301 KSELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL------------QRGLDGALSEPLFK--CVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.810e-32
Identity = 87/204 (42.65%), Postives = 116/204 (56.86%), Query Frame = 1
Query:  625 EMVDWVDTEGRVIC-----ALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG--EAVRWQEEEVDWGSYLSWEEVETKV----SEGVWEFVPDGLQVWRHYLEWQASAAEDSGLA 1203
            E V WV+  G  +       LPR ++H  NVLH+GAG+++R+    V+ H+R++ KR+FPS+YDMF+GGVS  ME + TTA REL EELG GP       A++  + D      V     LV+T  NRC V V++Y VA G  E+     EEV WG ++  EEV  +V      G W FVPDGL VW  +L      A D+G A
Sbjct:  186 ERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSRVFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGPAAC----AAQEESTDFRFLFDV-----LVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFLR-----ATDAGSA 375          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT)

HSP 1 Score: 128 bits (321), Expect = 4.920e-31
Identity = 79/185 (42.70%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGL-GPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGEAVRWQEEEVDWGSYLSWEEVETKVSEGVWEFVPDGLQVWRHYLEWQA 1176
            E+VD +D + RV+    R  +   N+LHRG G++  +  G +Y HRRT TK VFP MYDMF+GGV G  E     A RE+ EELG+ GP  E                 P+ R   L     NR +V+V  Y+V     +R Q EEV+WGSY+S EE+E K+ E  W FVPDGL++W H  E +A
Sbjct:   10 ELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLDPDGRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGIEGPQPE-----------------PICR--YLYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKIGE--WNFVPDGLEIWNHIRELKA 171          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC)

HSP 1 Score: 133 bits (335), Expect = 1.760e-30
Identity = 90/239 (37.66%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIRN-----------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELG----LGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG-EAVRWQEEEVDWGSYLSWEEVETK--------VSEGVW-------------------------------EFVPDGL---QVWRHYLE 1167
            E+VD V ++G+V+ ++PR++VH  N+LHRG G++I              L  VYCH+RT TKRVFPS+YDMF+GGVS S E S  TA RE+ EELG    L  + EG D  S +S             +C + T  NRCVVS F Y      E++ WQEEEV WG ++ ++ VE          V++G W                               ++VPDGL   Q W+ YLE
Sbjct:  197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLPQVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGMKRALNLMEEGLDDESPLSQ---------ELFQCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQAWKKYLE 426          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.610e-30
Identity = 87/235 (37.02%), Postives = 123/235 (52.34%), Query Frame = 1
Query:  625 EMVDWVDTEG-RVICALPRSVVHANNVLHRGAGVMI---RNHLGH----VYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGP-LGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEGE--AVRWQEEEVDWGSYLSWEEVET-------KVSEG--------------------------------VWEFVPDGLQVWRHYLEWQAS 1179
            E V+ VD  G  ++  LPR +VH  N+LHRG GV++    +H  H    VY HRRT TKR+FPS+YDMF+GGVS + E S  TA RE+ EE+GL   L +  +G +  +  + T        +C++ T  NRCVV+VF Y   E E  +++WQEEEV WG ++ ++ VE        ++ EG                                 W++VPDGL VW  +L W+ S
Sbjct:  200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSDHDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGLSKGLQQQLEGGNDDAIDEKTQILSNELFKCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVPYDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWKKS 434          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.140e-29
Identity = 86/236 (36.44%), Postives = 114/236 (48.31%), Query Frame = 1
Query:  625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI---RN--------------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHR-GECLVQTDSNRCVVSVFDYRVA-EGEAVRWQEEEVDWGSYLSWEEVETKVSEGV----------------------------------WEFVPDGLQVWRHYLEWQ 1173
            E+V+ VD  G  +  +PR +VH  N+LHRG GVM+   RN               +  VY HRRT  KRVFPS+YDMF+GGVSG+ EP   TA REL EELGL  +        R +  D T Q        C V T  NRCVVS+F Y +  + + + WQEEEV WG+++ +  V+      +                                  W+FVPDGL VW  + +W+
Sbjct:    8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRV-------LRTTNGDDTHQQLSEMLFRCTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR 236          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.290e-28
Identity = 85/235 (36.17%), Postives = 114/235 (48.51%), Query Frame = 1
Query:  625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI---RN--------------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVAEG-EAVRWQEEEVDWGSYLSWEEVETKVSEGV----------------------------------WEFVPDGLQVWRHYLEWQ 1173
            E+V+ VD  G  +  +PR +VH  N+LHRG GVM+   RN               +  VY HRRT  KRVFPS+YDMF+GGVSG+ EP   TA REL EELGL  +   G G+      + T Q       C V T  NRCVVS+F Y +    + + WQ+EEV WG+++ +  V+      +                                  W+FVPDGL VW  + +W+
Sbjct:  217 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRVLRDGSGSDD----EKTPQLSEMLFRCTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR 447          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: A0A1Z5JA98_FISSO (Nudix hydrolase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA98_FISSO)

HSP 1 Score: 127 bits (319), Expect = 2.820e-28
Identity = 81/230 (35.22%), Postives = 113/230 (49.13%), Query Frame = 1
Query:  622 GEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMIR-------NHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVETKVSEGV-----------------------------------------WEFVPDGLQVWRHYL 1164
            GEMV+ VD  G V+  +PR +VH +N+LHRG G+ +        N    +Y HRRT TKR+FPS+YDMF+GGVS + E +  TA RE+ EELGL             S  D     P    +C+V T  NRCVV +F Y +  + E+++WQ+EEV WGS++ ++ +E      +                                         W+FVPDGL VW  +L
Sbjct:  214 GEMVEMVDRTGAVLGHVPRKLVHQHNILHRGIGIFVTKDDPMEGNQRPDLYTHRRTETKRIFPSLYDMFVGGVSLAGEDAFITAQREVEEELGL-------------SCRDHLR--PERLLQCVVCTAYNRCVVDLFVYLMNTKEESIKWQDEEVAWGSFVPYKTIEAAADRSIHRLAERGEWPGRYPPIQSSRMGKLDPEDETIRFEGAMEWTSWDFVPDGLLVWEAWL 428          
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Match: B7FXH4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXH4_PHATC)

HSP 1 Score: 124 bits (312), Expect = 3.030e-27
Identity = 85/239 (35.56%), Postives = 117/239 (48.95%), Query Frame = 1
Query:  625 EMVDWVDTEGRVICALPRSVVHANNVLHRGAGVMI-------------RN------HLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEELGLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRV-AEGEAVRWQEEEVDWGSYLSWEEVETKVSEGV-------------------------------------WEFVPDGLQVWRHYLEW 1170
            E+V+ +D +G+++  +PR++VH  N+LHRG GV I             RN      H   +YCHRRTSTKR+FP +YDMF+GGV+ + E S  TALRE+GEELGL   G  GD        +A L        C+V T  NRCVV ++ Y +    E V WQ EEV WG ++ +  V+  V   +                                     W++VPDGL VW  +L +
Sbjct:  225 EIVEMMDRDGKILGKVPRNLVHEYNLLHRGVGVFITRDVPLQLPIHGARNSSPSPTHQPDLYCHRRTSTKRIFPDLYDMFVGGVALAGEDSRRTALREVGEELGLAQ-GNIGD--------EAILT-------CVVCTGYNRCVVDLYCYVMNTMAERVSWQAEEVAWGDFVPFNAVQASVDLSIQRLVSDGSWPGRYPPIQSSYNGVFPKDEFSSIRNWDSWDYVPDGLLVWEAWLRY 447          
The following BLAST results are available for this feature:
BLAST of mRNA_D-herbacea_F_contig105.530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF1_ECTSI7.930e-11951.77Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2NSK3_9STRA3.280e-3337.61Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A4D9D9L5_9STRA1.810e-3242.65Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A2E3A4P0_9BACT4.920e-3142.70NUDIX hydrolase n=2 Tax=Planctomycetes bacterium T... [more]
K0R8X5_THAOC1.760e-3037.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4T0F2_9STRA3.610e-3037.02Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0GKM9_9STRA3.140e-2936.44Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0CKQ7_9STRA2.290e-2836.17Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1Z5JA98_FISSO2.820e-2835.22Nudix hydrolase domain-containing protein n=2 Tax=... [more]
B7FXH4_PHATC3.030e-2735.56Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-herbacea_F_contig105contigD-herbacea_F_contig105:221153..225477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Desmarestia herbacea DmunF female vs UniRef902022-09-19
OGS1.0 of Desmarestia herbacea DmunF female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.2
Seed ortholog evalue3.9e-76
Seed eggNOG ortholog2880.D8LSF1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.m7G(5')pppN diphosphatase activity
EggNOG OGs2S4X7@2759,COG0494@1
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-21_003460.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1597
Cds size639
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.1233954-UTR-D-herbacea_F_contig105:221152..2214391622927462.1233954-UTR-D-herbacea_F_contig105:221152..221439Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 221153..221439 +
1690790183.4938114-UTR-D-herbacea_F_contig105:221152..2214391690790183.4938114-UTR-D-herbacea_F_contig105:221152..221439Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 221153..221439 +
1622927462.1341996-UTR-D-herbacea_F_contig105:221957..2222461622927462.1341996-UTR-D-herbacea_F_contig105:221957..222246Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 221958..222246 +
1690790183.5076728-UTR-D-herbacea_F_contig105:221957..2222461690790183.5076728-UTR-D-herbacea_F_contig105:221957..222246Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 221958..222246 +
1622927462.1969552-UTR-D-herbacea_F_contig105:225095..2254771622927462.1969552-UTR-D-herbacea_F_contig105:225095..225477Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 225096..225477 +
1690790183.5585022-UTR-D-herbacea_F_contig105:225095..2254771690790183.5585022-UTR-D-herbacea_F_contig105:225095..225477Desmarestia herbacea DmunF femaleUTRD-herbacea_F_contig105 225096..225477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927462.1446583-CDS-D-herbacea_F_contig105:222246..2224111622927462.1446583-CDS-D-herbacea_F_contig105:222246..222411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 222247..222411 +
1690790183.519947-CDS-D-herbacea_F_contig105:222246..2224111690790183.519947-CDS-D-herbacea_F_contig105:222246..222411Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 222247..222411 +
1622927462.153516-CDS-D-herbacea_F_contig105:223170..2233571622927462.153516-CDS-D-herbacea_F_contig105:223170..223357Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 223171..223357 +
1690790183.5285163-CDS-D-herbacea_F_contig105:223170..2233571690790183.5285163-CDS-D-herbacea_F_contig105:223170..223357Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 223171..223357 +
1622927462.1624396-CDS-D-herbacea_F_contig105:224219..2243831622927462.1624396-CDS-D-herbacea_F_contig105:224219..224383Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 224220..224383 +
1690790183.5385578-CDS-D-herbacea_F_contig105:224219..2243831690790183.5385578-CDS-D-herbacea_F_contig105:224219..224383Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 224220..224383 +
1622927462.175869-CDS-D-herbacea_F_contig105:224972..2250951622927462.175869-CDS-D-herbacea_F_contig105:224972..225095Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 224973..225095 +
1690790183.5492897-CDS-D-herbacea_F_contig105:224972..2250951690790183.5492897-CDS-D-herbacea_F_contig105:224972..225095Desmarestia herbacea DmunF femaleCDSD-herbacea_F_contig105 224973..225095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-herbacea_F_contig105.530.1prot_D-herbacea_F_contig105.530.1Desmarestia herbacea DmunF femalepolypeptideD-herbacea_F_contig105 222247..225095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-herbacea_F_contig105.530.1

>prot_D-herbacea_F_contig105.530.1 ID=prot_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=polypeptide|length=213bp
MERAVQEEDKQEEEQGEMVDWVDTEGRVICALPRSVVHANNVLHRGAGVM
IRNHLGHVYCHRRTSTKRVFPSMYDMFIGGVSGSMEPSLTTALRELGEEL
GLGPLGEGGDGASRMSAWDATLQPPVHRGECLVQTDSNRCVVSVFDYRVA
EGEAVRWQEEEVDWGSYLSWEEVETKVSEGVWEFVPDGLQVWRHYLEWQA
SAAEDSGLAASS*
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mRNA from alignment at D-herbacea_F_contig105:221153..225477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-herbacea_F_contig105.530.1 ID=mRNA_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=mRNA|length=4325bp|location=Sequence derived from alignment at D-herbacea_F_contig105:221153..225477+ (Desmarestia herbacea DmunF female)
GCTACGGCTGCGGGAAAACCTCCGCGTCTTGTGCAAGGGTCGCGAGACTT TGAGACCTTCTTCGGCGCATACAGAGTGAGACCCAAAAGGAAGTCGGAGA GCTTCGCGGACGCCAACGGTCAGTGCGTCTTGATTTTGAGCCAGGGCGAA GACGATGATGATGAAGACGAGGAAGAGGACGATGATGAGGGATTGCATGT GGCCGGTTCATTAGAGGAAGATCCTGCTACTGCTGCTGCTGCTGCTGCTG CTGAAGCTCGCGTAACCGTTGCCACTGGTGAGAAGCTGTGCGGACACGTC AAAAACAACACAGTAGTGTCGAGAGGGACCCGAACTGTGCTGTACCTGGT GTGGTCGGGATCATGTTATATATTATTGTTCAAAGTACCGGCACGAGTAC ACCAGTACAACAGTACTAACAGAACAAAAAAACAGCAGTATCATATGTAG ACTTCGTGTAAGATCAACAGTCGGTACGAGAGCGTTGTTTGTATATTGCT GTGATGACGTGTGTTGATTGACCACGTCATTTGCCGCAATGCCGTAGACG AAGAGGACATAAGTTTCAGCCGTATCAACCCCTGTCAAGATCGTCATGTT GCCGTGATACAGCGAACCTTTGCGATCGGCAAAGTGACCTGTATGTGTCG CTGTGTTGACGAACGCATGTATCTGCCTTGCACACACACACACACACACA CACACACACACACATTTCTCTTACAGGCGACACCGGCATGGGCCAGCAGC AACAACAGCAACAACAGCAACAACAACAACAAAGGAGACGATCAATCGAA GACAGTGTGCTCGTCATTGAAGACATCGCCGGTGGCGGCGAAGGCAGCTA TCGATACGTCGGCTTCTGCGGCGCGGTAGCACCGCAGGGCCTCGTGAGCA GCAGCAGCAGCAGCAACGCCTCCACCCTTCCCAATACCTACGTCTGTTCT CAACTGGGCCGCGAAGTAGACGCAACTACCACGGGTCTTCTCGTAAGAGC GTTGCACGGCTGGCTTGGGGGACCGGACGCGGCAGCAGCCGCCGCCAAAC GCACGGGGGCCGCGGCGAGGAAGAGAAAGAGGGGGGCGGCGGGAATGGAG AGGGCGGTACAGGAGGAGGACAAGCAGGAGGAGGAGCAGGGAGAGATGGT TGATTGGGTGGACACAGAGGGGAGGGTCATCTGCGCGCTGCCTAGGTCGG TGGTGCATGCCAACAATGTGCTGCACCGCGGGGCTGGGGTGATGATCCGA AACCATCTGGTGCGTGTTGGGTGTGTGTGTGTGTACTCATTGCATGCATA GCCGTAGTCGTATGACCATAGACCCTCTCATCCCAACTATGCCGGGACGG AGCACGTCGGGTTTTCACCGACCAGGCAGGCATTGCGTGCACCAAGCCCG AAGCGCCGTGAGGTGTTCGGCGATTCGCATGAAGGGTGAGCTGCATCCTA CTAAGAATCACTTACGAGGCGGACTTTCTTGCATATGGATGACAGTTTCG AATGAACAGTTTATTTTCTGGTGTGGCCACTGCCAGGGACAGCCATGGGT ATACTATGTAACTGCTTCGTGGGTGCCTTGCCATATATACACTACGTGAT ATCATCCCACTTGCGCGGAGTTCAGGTTCTCCACCCGGCACAATATGATC TAACTCGACAACCAGCCATGGTAACCGCCAAAAACAAATAAAGAAAAAAA ACGGTACTGTGGTTGTCTAGCTCACGTAGCGAGTGGGGTGTTTTACAGCG TCGTTGCCAACCGACGCCAACCCCGAGGGGGCGGCGGGGGGGCTTACTCA TTATTGCTTGCCTTAGTTTCTACACGGAGCGCCGTTCCCATTCCTAATAG AGATACCTCCAACGTTCGGGCGCTCTTTACGTTTTTGCCATATCTTACAT AAAAACGGGGGGGGGGGGGGACTAAATGAAACACCCGATGTTTGTGGTCC CTGTCAGCACCTACGGACGCTTTGCTTTGACGTGTGCTGTATGTATGCGT TGTGTGTGTGCGCTGCAGGGGCATGTTTATTGTCACCGTCGAACTTCAAC GAAACGAGTGTTCCCTTCGATGTACGACATGTTCATCGGGGGCGTGTCGG GCAGCATGGAGCCATCCCTGACGACGGCACTACGGGAGCTGGGGGAGGAG CTCGGGCTGGGTCCTCTCGGAGAGGGTGGCGATGGGGCTTCACGTATGTC TGCCTGTTGTTTGCTTGAAAAAACCCAGACTACTAGCAACTACACCTTGC CCGCCGGAGTCGGTCCAGTTGCGGTCCACCCTATCCGTTAGGGCGTTGGT CCTCGGTTTACTTGCTGCTGTTTTCTTTTCGCTATCATGTCATGGGGAAC GAAACGAAACGTTAACGAGGTTTGGTTGTTGTGCCATCGATATTCAGTAT TCAGTGTTTTGGTCTTACCTGGTGAGGGTACCTGGTGAGGGTAGAGTTGC GAAAGAGAGGAAAGCAGTAGAGGGGGGGGTTGGGGGTTACTAATTTGTTG CTTGCCTTAGTCATTTGACCATTGACCACGCATCCGTTTTCAGACGGGGC ACCGCTCCTTTTCCTAATAGAGACACCTCCAATATTTGGACGCTCTTTTC TTAGTGGAGGGGGGGGATGATGGATGGCTGCTTGATGCTTTGTACAATTT TAAGCGATGCAAAAGAGTGGTCGACGAGCGGGAGCATGGCCAGGGGGAAC GGTTTTTGTTAACCGGCAGCAGGACAGGCTACATATGTATAGTGTACCCT ACTCGCGATTGATGGTGAAGTTTGCAGACACTCCGGCAGCGCGGTACCAG GTACATGTCCAAAACACACACACACACAAGAAAGCGTTAGGTAAGTCCGA TTATATGTTTGAAGGCCGCCGCTATTATTGTGCACGCATGTCTTGTTGTG TGGAAACAATTTCACCCACGCCCGCCGCTGTCCTTCTCTTGCGCTTGTCG CATTGGTCGGCCAATTGAACAACGACCAACCGACCAACCGACCAACCGAC CGACCGACCGACCGATTGATCGAACGGCTAAAAATGAAAAACACCATCCG GGCGTTGTTCCATACAGGGGACGCTACGCTACAGCCCCCGGTTCATCGAG GAGAATGTCTCGTTCAGACGGATAGCAACCGCTGCGTGGTGTCCGTGTTC GACTACCGTGTGGCCGAGGGCGAGGCGGTGCGGTGGCAAGAGGAAGAGGT CGATTGGGGCAGCTACCTGTCTTGGGAAGAGGTACGATAATAACATAATA ACTCAATGAAAAGTAACTCAGTGTCATGGTAACTATCACCAAGAAGAGGC GACGAACGAGGCCGGGAAGCGGGTCGATTGTTCCGCCTCTCGAGGGATTT ATTTTGTGACGGCCTGCCCGACCCGGCCGGGGTCGATCAACCGATACCAC CCACGTCTGTCTCCTTGCAGACACCTTTATGTTGATGGGAATTAACTTAC GGCACGTCGTTCTCTTAACATTTACCAGTATATATGTACTTCGTATCACT TACAGTCCTTGAGAAAACACTACTGTATGGGGCTACGAGTAGGGCACCTT TTTACGTACCCGGTTTTTGTTTGTTTTGTCGATATGAAATCAGTACTGGG CATATTGAGATTTGTGGAGATGGGATGGAAACCGGTGGGGTTGGTATGCT TGTATGAGAACGTGCCTACTTTTGTGACCACGGGTCCGAGCTATCCGGCT AATGTGATGAAAATATACTAATAATACTCGATTCACGCAACCCTATCCCT CCCGGTAAACGGTGAAAACCCGACACACGCCTGTTCCGTGCCGGCTGATT GTTTTTTTTTCACGCCGCAGGTTGAGACCAAGGTCTCGGAAGGGGTTTGG GAGTTCGTCCCCGACGGGCTGCAGGTGTGGCGGCACTACCTCGAATGGCA AGCGTCAGCAGCAGAAGACTCGGGGTTGGCTGCGTCGTCGTAGCCAAACT AACTCACTCCTTCGCATCGTTTCTGTTTCTTGCCCCAGGCATTCCCCCCG GGGCGCCGATCGATAATATTTCTCGGTAATGATCCTGCTGTAGAGTTGTA TGTATGAAGCTACATGTGATAATTAAAAAAGGCTGAAGGGTGGATATCGT CCTCTACGAAAGTGAAAATTAATTAATGCATGAATGTCTTGAATTTGTAT GAATTAATTATTTTTTTGGCGTTTCATACTATTAGTAGAACCTACCTCCT ACCTCCTACTACTACTATACCACTACTACTACAAACAACTATACCACTAC AATAGTATTATTATCATATACATATATATCAGACAGAGTGGGAAAGCCTG GAGATAGAAGCAAAAAGTTATTACC
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Coding sequence (CDS) from alignment at D-herbacea_F_contig105:221153..225477+

>mRNA_D-herbacea_F_contig105.530.1 ID=mRNA_D-herbacea_F_contig105.530.1|Name=mRNA_D-herbacea_F_contig105.530.1|organism=Desmarestia herbacea DmunF female|type=CDS|length=1278bp|location=Sequence derived from alignment at D-herbacea_F_contig105:221153..225477+ (Desmarestia herbacea DmunF female)
ATGGAGAGGGCGGTACAGGAGGAGGACAAGCAGGAGGAGGAGCAGGGAGA
GATGGTTGATTGGGTGGACACAGAGGGGAGGGTCATCTGCGCGCTGCCTA
GGTCGGTGGTGCATGCCAACAATGTGCTGCACCGCGGGGCTGGGGTGATG
ATCCGAAACCATCTGATGGAGAGGGCGGTACAGGAGGAGGACAAGCAGGA
GGAGGAGCAGGGAGAGATGGTTGATTGGGTGGACACAGAGGGGAGGGTCA
TCTGCGCGCTGCCTAGGTCGGTGGTGCATGCCAACAATGTGCTGCACCGC
GGGGCTGGGGTGATGATCCGAAACCATCTGGGGCATGTTTATTGTCACCG
TCGAACTTCAACGAAACGAGTGTTCCCTTCGATGTACGACATGTTCATCG
GGGGCGTGTCGGGCAGCATGGAGCCATCCCTGACGACGGCACTACGGGAG
CTGGGGGAGGAGCTCGGGCTGGGTCCTCTCGGAGAGGGTGGCGATGGGGC
TTCACGTATGTCTGCCTGGGCATGTTTATTGTCACCGTCGAACTTCAACG
AAACGAGTGTTCCCTTCGATGTACGACATGTTCATCGGGGGCGTGTCGGG
CAGCATGGAGCCATCCCTGACGACGGCACTACGGGAGCTGGGGGAGGAGC
TCGGGCTGGGTCCTCTCGGAGAGGGTGGCGATGGGGCTTCACGTATGTCT
GCCTGGGACGCTACGCTACAGCCCCCGGTTCATCGAGGAGAATGTCTCGT
TCAGACGGATAGCAACCGCTGCGTGGTGTCCGTGTTCGACTACCGTGTGG
CCGAGGGCGAGGCGGTGCGGTGGCAAGAGGAAGAGGTCGATTGGGGCAGC
TACCTGTCTTGGGAAGAGGGGACGCTACGCTACAGCCCCCGGTTCATCGA
GGAGAATGTCTCGTTCAGACGGATAGCAACCGCTGCGTGGTGTCCGTGTT
CGACTACCGTGTGGCCGAGGGCGAGGCGGTGCGGTGGCAAGAGGAAGAGG
TCGATTGGGGCAGCTACCTGTCTTGGGAAGAGGTTGAGACCAAGGTCTCG
GAAGGGGTTTGGGAGTTCGTCCCCGACGGGCTGCAGGTGTGGCGGCACTA
CCTCGAATGGCAAGCGTCAGCAGCAGAAGACTCGGGGTTGGCTGCGTCGT
CGTAGGTTGAGACCAAGGTCTCGGAAGGGGTTTGGGAGTTCGTCCCCGAC
GGGCTGCAGGTGTGGCGGCACTACCTCGAATGGCAAGCGTCAGCAGCAGA
AGACTCGGGGTTGGCTGCGTCGTCGTAG
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